RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 FAM236AA0A1B0GUQ0 79 aa10.02□□□□□ -0.81
LIME1-203ENST00000465591 FAM236BA0A1B0GV22 79 aa10.02□□□□□ -0.81
LIME1-203ENST00000465591 MACF1Q9UPN3 7388 aaKnown RBP10.02□□□□□ -0.81
LIME1-203ENST00000465591 SMIM20Q8N5G0 67 aa10.01□□□□□ -0.81
LIME1-203ENST00000465591 S4R3F8 94 aa10.01□□□□□ -0.81
LIME1-203ENST00000465591 H3BPC8 53 aa9.99□□□□□ -0.81
LIME1-203ENST00000465591 LCA10Q71F78 164 aa9.98□□□□□ -0.81
LIME1-203ENST00000465591 TRAV7A0A075B6U4 112 aa9.93□□□□□ -0.82
LIME1-203ENST00000465591 SYNE2Q8WXH0 6885 aaKnown RBP9.93□□□□□ -0.82
LIME1-203ENST00000465591 CSAG1Q6PB30 78 aa9.92□□□□□ -0.82
LIME1-203ENST00000465591 KRTAP3-3Q9BYR6 98 aa9.88□□□□□ -0.83
LIME1-203ENST00000465591 KLKP1Q107X0 134 aa9.86□□□□□ -0.83
LIME1-203ENST00000465591 MT1BP07438 61 aa9.81□□□□□ -0.84
LIME1-203ENST00000465591 A8MUN3 132 aa9.79□□□□□ -0.84
LIME1-203ENST00000465591 SPRR2GQ9BYE4 73 aa9.79□□□□□ -0.84
LIME1-203ENST00000465591 SERP2Q8N6R1 65 aa9.77□□□□□ -0.85
LIME1-203ENST00000465591 KRTAP19-8Q3LI54 63 aa9.76□□□□□ -0.85
LIME1-203ENST00000465591 Q5VV11 94 aa9.71□□□□□ -0.86
LIME1-203ENST00000465591 C20orf197Q8N268 126 aa9.65□□□□□ -0.86
LIME1-203ENST00000465591 SNURFQ9Y675 71 aa9.65□□□□□ -0.86
LIME1-203ENST00000465591 KRTAP6-3Q3LI67 103 aa9.64□□□□□ -0.87
LIME1-203ENST00000465591 A6NN06 94 aa9.63□□□□□ -0.87
LIME1-203ENST00000465591 NDUFC1O43677 76 aa9.62□□□□□ -0.87
LIME1-203ENST00000465591 DMAC1Q96GE9 116 aa9.62□□□□□ -0.87
LIME1-203ENST00000465591 COX7CP15954 63 aa9.58□□□□□ -0.88
LIME1-203ENST00000465591 KRTAP10-5P60370 271 aa9.55□□□□□ -0.88
LIME1-203ENST00000465591 CRIPTQ9P021 101 aa9.54□□□□□ -0.88
LIME1-203ENST00000465591 ACYP2P14621 99 aa9.53□□□□□ -0.88
LIME1-203ENST00000465591 H0YAA0 97 aa9.51□□□□□ -0.89
LIME1-203ENST00000465591 SPANXA2-OT1Q8N9U9 137 aa9.5□□□□□ -0.89
LIME1-203ENST00000465591 ANAPC13Q9BS18 74 aa9.49□□□□□ -0.89
LIME1-203ENST00000465591 ADM2Q7Z4H4 148 aa9.44□□□□□ -0.9
LIME1-203ENST00000465591 CHKB-CPT1BH3BT56 60 aa9.36□□□□□ -0.91
LIME1-203ENST00000465591 SPTSSBQ8NFR3 76 aa9.36□□□□□ -0.91
LIME1-203ENST00000465591 NEBP20929 6669 aa9.35□□□□□ -0.91
LIME1-203ENST00000465591 H7BZZ5 65 aa9.31□□□□□ -0.92
LIME1-203ENST00000465591 MUC12Q9UKN1 5478 aa9.3□□□□□ -0.92
LIME1-203ENST00000465591 CYSTM1Q9H1C7 97 aa9.27□□□□□ -0.93
LIME1-203ENST00000465591 P0C880 135 aa9.26□□□□□ -0.93
LIME1-203ENST00000465591 CCDC179H3BU77 68 aa9.24□□□□□ -0.93
LIME1-203ENST00000465591 KRTAP5-9P26371 169 aa9.2□□□□□ -0.94
LIME1-203ENST00000465591 KRTAP3-2Q9BYR7 98 aa9.19□□□□□ -0.94
LIME1-203ENST00000465591 MT1XP80297 61 aa9.18□□□□□ -0.94
LIME1-203ENST00000465591 COA5Q86WW8 74 aa9.18□□□□□ -0.94
LIME1-203ENST00000465591 R4GN34 69 aa9.15□□□□□ -0.94
LIME1-203ENST00000465591 KMT2DO14686 5537 aa9.13□□□□□ -0.95
LIME1-203ENST00000465591 M0QZ58 72 aa9.11□□□□□ -0.95
LIME1-203ENST00000465591 PLAC4Q8WY50 150 aa9.1□□□□□ -0.95
LIME1-203ENST00000465591 PRO2289Q9P1D8 64 aa9.08□□□□□ -0.96
LIME1-203ENST00000465591 ATP5EP56381 51 aaPredicted RBP9.07□□□□□ -0.96
LIME1-203ENST00000465591 MDN1Q9NU22 5596 aa9.02□□□□□ -0.97
LIME1-203ENST00000465591 PCP4P48539 62 aa9.01□□□□□ -0.97
LIME1-203ENST00000465591 LINC01554Q52M75 96 aa8.99□□□□□ -0.97
LIME1-203ENST00000465591 TMEM258P61165 79 aa8.97□□□□□ -0.97
LIME1-203ENST00000465591 SEC61GP60059 68 aa8.94□□□□□ -0.98
LIME1-203ENST00000465591 KRTAP20-1Q3LI63 56 aa8.93□□□□□ -0.98
LIME1-203ENST00000465591 KRTAP12-2P59991 146 aa8.91□□□□□ -0.98
LIME1-203ENST00000465591 SPRR2FQ96RM1 72 aa8.91□□□□□ -0.98
LIME1-203ENST00000465591 SERP1Q9Y6X1 66 aa8.9□□□□□ -0.98
LIME1-203ENST00000465591 KRTAP8-1Q8IUC2 63 aa8.86□□□□□ -0.99
LIME1-203ENST00000465591 KRTAP4-8A0A0G2JLE6 195 aa8.82□□□□□ -1
LIME1-203ENST00000465591 KRTAP4-8Q9BYQ9 185 aa8.82□□□□□ -1
LIME1-203ENST00000465591 SPRR2EP22531 72 aa8.79□□□□□ -1
LIME1-203ENST00000465591 SPRR2BP35325 72 aa8.79□□□□□ -1
LIME1-203ENST00000465591 SPRR2AP35326 72 aa8.79□□□□□ -1
LIME1-203ENST00000465591 KRTAP10-7P60409 375 aaPredicted RBP8.78□□□□□ -1
LIME1-203ENST00000465591 A0A1B0GU69 56 aa8.74□□□□□ -1.01
LIME1-203ENST00000465591 LCE1AQ5T7P2 110 aa8.7□□□□□ -1.02
LIME1-203ENST00000465591 A0A1B0GU33 70 aa8.69□□□□□ -1.02
LIME1-203ENST00000465591 KRTAP2-3P0C7H8 128 aa8.69□□□□□ -1.02
LIME1-203ENST00000465591 KRTAP10-12P60413 245 aa8.69□□□□□ -1.02
LIME1-203ENST00000465591 KRTAP2-4Q9BYR9 128 aa8.69□□□□□ -1.02
LIME1-203ENST00000465591 KRTAP13-4Q3LI77 160 aa8.67□□□□□ -1.02
LIME1-203ENST00000465591 PRR15LQ9BU68 103 aa8.65□□□□□ -1.02
LIME1-203ENST00000465591 LINC01558Q9Y6Z2 57 aa8.61□□□□□ -1.03
LIME1-203ENST00000465591 SPATA8Q6RVD6 105 aa8.55□□□□□ -1.04
LIME1-203ENST00000465591 RPS28P62857 69 aaKnown RBP8.51□□□□□ -1.05
LIME1-203ENST00000465591 A0A0D9SG42 100 aa8.5□□□□□ -1.05
LIME1-203ENST00000465591 SPRR2DP22532 72 aa8.49□□□□□ -1.05
LIME1-203ENST00000465591 SMIM26A0A096LP01 95 aa8.47□□□□□ -1.05
LIME1-203ENST00000465591 V9GYY9 64 aa8.45□□□□□ -1.06
LIME1-203ENST00000465591 CAMK2N1Q7Z7J9 78 aa8.41□□□□□ -1.06
LIME1-203ENST00000465591 KRTAP2-2Q9BYT5 123 aa8.4□□□□□ -1.06
LIME1-203ENST00000465591 KRTAP2-1Q9BYU5 128 aa8.4□□□□□ -1.06
LIME1-203ENST00000465591 SPINT4Q6UDR6 99 aa8.38□□□□□ -1.07
LIME1-203ENST00000465591 Q1T7F1 81 aa8.36□□□□□ -1.07
LIME1-203ENST00000465591 UQCR11O14957 56 aa8.35□□□□□ -1.07
LIME1-203ENST00000465591 A8MU10 97 aa8.32□□□□□ -1.08
LIME1-203ENST00000465591 KRTAP12-1P59990 96 aa8.32□□□□□ -1.08
LIME1-203ENST00000465591 LCE3BQ5TA77 95 aa8.27□□□□□ -1.09
LIME1-203ENST00000465591 PSPHP1O15172 72 aa8.26□□□□□ -1.09
LIME1-203ENST00000465591 KRTAP19-7Q3SYF9 63 aa8.22□□□□□ -1.09
LIME1-203ENST00000465591 MIR22HGQ0VDD5 57 aa8.18□□□□□ -1.1
LIME1-203ENST00000465591 MT1EP04732 61 aa8.13□□□□□ -1.11
LIME1-203ENST00000465591 LCE5AQ5TCM9 118 aa8.08□□□□□ -1.12
LIME1-203ENST00000465591 A6NED7 52 aa8.05□□□□□ -1.12
LIME1-203ENST00000465591 KRTAP19-3Q7Z4W3 81 aa8.04□□□□□ -1.12
LIME1-203ENST00000465591 K7ERS5 55 aa8.02□□□□□ -1.13
LIME1-203ENST00000465591 KRTAP19-5Q3LI72 72 aa7.99□□□□□ -1.13
LIME1-203ENST00000465591 DSTQ03001 7570 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms