RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 LCA10Q71F78 164 aa10.26□□□□□ -0.77
SSNA1-202ENST00000459860 CSAG1Q6PB30 78 aa10.25□□□□□ -0.77
SSNA1-202ENST00000459860 H3BPC8 53 aa10.24□□□□□ -0.77
SSNA1-202ENST00000459860 KLKP1Q107X0 134 aa10.19□□□□□ -0.78
SSNA1-202ENST00000459860 A8MUN3 132 aa10.17□□□□□ -0.78
SSNA1-202ENST00000459860 FAM236AA0A1B0GUQ0 79 aa10.15□□□□□ -0.78
SSNA1-202ENST00000459860 FAM236BA0A1B0GV22 79 aa10.15□□□□□ -0.78
SSNA1-202ENST00000459860 SMIM20Q8N5G0 67 aa10.15□□□□□ -0.78
SSNA1-202ENST00000459860 MACF1Q9UPN3 7388 aaKnown RBP10.14□□□□□ -0.79
SSNA1-202ENST00000459860 SYNE2Q8WXH0 6885 aaKnown RBP10.11□□□□□ -0.79
SSNA1-202ENST00000459860 TRAV7A0A075B6U4 112 aa10.08□□□□□ -0.8
SSNA1-202ENST00000459860 KRTAP3-3Q9BYR6 98 aa10.08□□□□□ -0.8
SSNA1-202ENST00000459860 NDUFC1O43677 76 aa10.07□□□□□ -0.8
SSNA1-202ENST00000459860 KRTAP19-6Q3LI70 58 aa10.04□□□□□ -0.8
SSNA1-202ENST00000459860 DMAC1Q96GE9 116 aa9.95□□□□□ -0.82
SSNA1-202ENST00000459860 H0YAA0 97 aa9.87□□□□□ -0.83
SSNA1-202ENST00000459860 SERP2Q8N6R1 65 aa9.84□□□□□ -0.83
SSNA1-202ENST00000459860 CRIPTQ9P021 101 aa9.82□□□□□ -0.84
SSNA1-202ENST00000459860 SNURFQ9Y675 71 aa9.82□□□□□ -0.84
SSNA1-202ENST00000459860 ACYP2P14621 99 aa9.8□□□□□ -0.84
SSNA1-202ENST00000459860 SPRR2GQ9BYE4 73 aa9.8□□□□□ -0.84
SSNA1-202ENST00000459860 KRTAP6-3Q3LI67 103 aa9.79□□□□□ -0.84
SSNA1-202ENST00000459860 C20orf197Q8N268 126 aa9.79□□□□□ -0.84
SSNA1-202ENST00000459860 ADM2Q7Z4H4 148 aa9.77□□□□□ -0.85
SSNA1-202ENST00000459860 Q5VV11 94 aa9.73□□□□□ -0.85
SSNA1-202ENST00000459860 KRTAP19-8Q3LI54 63 aa9.68□□□□□ -0.86
SSNA1-202ENST00000459860 SPANXA2-OT1Q8N9U9 137 aa9.68□□□□□ -0.86
SSNA1-202ENST00000459860 SPTSSBQ8NFR3 76 aa9.68□□□□□ -0.86
SSNA1-202ENST00000459860 CHKB-CPT1BH3BT56 60 aa9.67□□□□□ -0.86
SSNA1-202ENST00000459860 MT1BP07438 61 aa9.62□□□□□ -0.87
SSNA1-202ENST00000459860 COX7CP15954 63 aa9.61□□□□□ -0.87
SSNA1-202ENST00000459860 NEBP20929 6669 aa9.58□□□□□ -0.88
SSNA1-202ENST00000459860 R4GN34 69 aa9.55□□□□□ -0.88
SSNA1-202ENST00000459860 P0C880 135 aa9.54□□□□□ -0.88
SSNA1-202ENST00000459860 A6NN06 94 aa9.49□□□□□ -0.89
SSNA1-202ENST00000459860 MUC12Q9UKN1 5478 aa9.48□□□□□ -0.89
SSNA1-202ENST00000459860 KRTAP3-2Q9BYR7 98 aa9.47□□□□□ -0.89
SSNA1-202ENST00000459860 M0QZ58 72 aa9.46□□□□□ -0.9
SSNA1-202ENST00000459860 ANAPC13Q9BS18 74 aa9.46□□□□□ -0.9
SSNA1-202ENST00000459860 COA5Q86WW8 74 aa9.39□□□□□ -0.91
SSNA1-202ENST00000459860 H7BZZ5 65 aa9.38□□□□□ -0.91
SSNA1-202ENST00000459860 KRTAP10-5P60370 271 aa9.37□□□□□ -0.91
SSNA1-202ENST00000459860 PLAC4Q8WY50 150 aa9.35□□□□□ -0.91
SSNA1-202ENST00000459860 CYSTM1Q9H1C7 97 aa9.34□□□□□ -0.91
SSNA1-202ENST00000459860 LINC01554Q52M75 96 aa9.32□□□□□ -0.92
SSNA1-202ENST00000459860 PRO2289Q9P1D8 64 aa9.24□□□□□ -0.93
SSNA1-202ENST00000459860 KRTAP20-1Q3LI63 56 aa9.21□□□□□ -0.94
SSNA1-202ENST00000459860 MDN1Q9NU22 5596 aa9.21□□□□□ -0.94
SSNA1-202ENST00000459860 CCDC179H3BU77 68 aa9.2□□□□□ -0.94
SSNA1-202ENST00000459860 KRTAP5-9P26371 169 aa9.2□□□□□ -0.94
SSNA1-202ENST00000459860 SEC61GP60059 68 aa9.2□□□□□ -0.94
SSNA1-202ENST00000459860 KMT2DO14686 5537 aa9.19□□□□□ -0.94
SSNA1-202ENST00000459860 SERP1Q9Y6X1 66 aa9.15□□□□□ -0.94
SSNA1-202ENST00000459860 ATP5EP56381 51 aaPredicted RBP9.1□□□□□ -0.95
SSNA1-202ENST00000459860 MT1XP80297 61 aa9.1□□□□□ -0.95
SSNA1-202ENST00000459860 KRTAP13-4Q3LI77 160 aa9.01□□□□□ -0.97
SSNA1-202ENST00000459860 A0A1B0GU33 70 aa8.94□□□□□ -0.98
SSNA1-202ENST00000459860 A0A1B0GU69 56 aa8.94□□□□□ -0.98
SSNA1-202ENST00000459860 TMEM258P61165 79 aa8.93□□□□□ -0.98
SSNA1-202ENST00000459860 KRTAP2-3P0C7H8 128 aa8.88□□□□□ -0.99
SSNA1-202ENST00000459860 KRTAP2-4Q9BYR9 128 aa8.88□□□□□ -0.99
SSNA1-202ENST00000459860 KRTAP12-2P59991 146 aa8.87□□□□□ -0.99
SSNA1-202ENST00000459860 SPATA8Q6RVD6 105 aa8.85□□□□□ -0.99
SSNA1-202ENST00000459860 A0A0D9SG42 100 aa8.84□□□□□ -0.99
SSNA1-202ENST00000459860 CAMK2N1Q7Z7J9 78 aa8.84□□□□□ -0.99
SSNA1-202ENST00000459860 PRR15LQ9BU68 103 aa8.81□□□□□ -1
SSNA1-202ENST00000459860 SPRR2FQ96RM1 72 aa8.77□□□□□ -1.01
SSNA1-202ENST00000459860 SMIM26A0A096LP01 95 aa8.73□□□□□ -1.01
SSNA1-202ENST00000459860 SPRR2EP22531 72 aa8.73□□□□□ -1.01
SSNA1-202ENST00000459860 SPRR2BP35325 72 aa8.73□□□□□ -1.01
SSNA1-202ENST00000459860 SPRR2AP35326 72 aa8.73□□□□□ -1.01
SSNA1-202ENST00000459860 SPINT4Q6UDR6 99 aa8.73□□□□□ -1.01
SSNA1-202ENST00000459860 KRTAP8-1Q8IUC2 63 aa8.72□□□□□ -1.01
SSNA1-202ENST00000459860 LINC01558Q9Y6Z2 57 aa8.7□□□□□ -1.02
SSNA1-202ENST00000459860 KRTAP10-7P60409 375 aaPredicted RBP8.69□□□□□ -1.02
SSNA1-202ENST00000459860 KRTAP10-12P60413 245 aa8.66□□□□□ -1.02
SSNA1-202ENST00000459860 KRTAP12-1P59990 96 aa8.63□□□□□ -1.03
SSNA1-202ENST00000459860 LCE1AQ5T7P2 110 aa8.62□□□□□ -1.03
SSNA1-202ENST00000459860 KRTAP4-8A0A0G2JLE6 195 aa8.59□□□□□ -1.03
SSNA1-202ENST00000459860 KRTAP4-8Q9BYQ9 185 aa8.59□□□□□ -1.03
SSNA1-202ENST00000459860 A8MU10 97 aa8.58□□□□□ -1.04
SSNA1-202ENST00000459860 KRTAP2-2Q9BYT5 123 aa8.58□□□□□ -1.04
SSNA1-202ENST00000459860 KRTAP2-1Q9BYU5 128 aa8.58□□□□□ -1.04
SSNA1-202ENST00000459860 UQCR11O14957 56 aa8.48□□□□□ -1.05
SSNA1-202ENST00000459860 SPRR2DP22532 72 aa8.45□□□□□ -1.06
SSNA1-202ENST00000459860 V9GYY9 64 aa8.43□□□□□ -1.06
SSNA1-202ENST00000459860 PCP4P48539 62 aa8.32□□□□□ -1.08
SSNA1-202ENST00000459860 Q1T7F1 81 aa8.32□□□□□ -1.08
SSNA1-202ENST00000459860 MIR22HGQ0VDD5 57 aa8.3□□□□□ -1.08
SSNA1-202ENST00000459860 PSPHP1O15172 72 aa8.29□□□□□ -1.08
SSNA1-202ENST00000459860 LCE3BQ5TA77 95 aa8.26□□□□□ -1.09
SSNA1-202ENST00000459860 TNP1P09430 55 aa8.21□□□□□ -1.1
SSNA1-202ENST00000459860 C10orf95Q9H7T3 257 aa8.21□□□□□ -1.1
SSNA1-202ENST00000459860 K7ERS5 55 aa8.17□□□□□ -1.1
SSNA1-202ENST00000459860 RPS28P62857 69 aaKnown RBP8.14□□□□□ -1.11
SSNA1-202ENST00000459860 KRTAP19-7Q3SYF9 63 aa8.12□□□□□ -1.11
SSNA1-202ENST00000459860 A6NED7 52 aa8.07□□□□□ -1.12
SSNA1-202ENST00000459860 MT1EP04732 61 aa8.06□□□□□ -1.12
SSNA1-202ENST00000459860 GPR98Q8WXG9 6306 aa8.06□□□□□ -1.12
SSNA1-202ENST00000459860 KRTAP19-5Q3LI72 72 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms