RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 TRAV7A0A075B6U4 112 aa5.83□□□□□ -1.48
SCN9A-204ENST00000452182 H3BPC8 53 aa5.83□□□□□ -1.48
SCN9A-204ENST00000452182 C1orf64Q8NEQ6 169 aa5.82□□□□□ -1.48
SCN9A-204ENST00000452182 FAM236DA0A1B0GTK5 79 aa5.81□□□□□ -1.48
SCN9A-204ENST00000452182 FAM236CP0DP71 79 aa5.81□□□□□ -1.48
SCN9A-204ENST00000452182 LINC00208Q96KT6 92 aa5.81□□□□□ -1.48
SCN9A-204ENST00000452182 FLGP20930 4061 aaPredicted RBP5.78□□□□□ -1.48
SCN9A-204ENST00000452182 MT1HP80294 61 aa5.78□□□□□ -1.48
SCN9A-204ENST00000452182 C4orf26Q17RF5 130 aa5.78□□□□□ -1.48
SCN9A-204ENST00000452182 SERP2Q8N6R1 65 aa5.77□□□□□ -1.49
SCN9A-204ENST00000452182 LCE1DQ5T752 114 aa5.76□□□□□ -1.49
SCN9A-204ENST00000452182 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
SCN9A-204ENST00000452182 LCE5AQ5TCM9 118 aa5.74□□□□□ -1.49
SCN9A-204ENST00000452182 KLKP1Q107X0 134 aa5.73□□□□□ -1.49
SCN9A-204ENST00000452182 H1FX-AS1Q4G0G2 97 aa5.73□□□□□ -1.49
SCN9A-204ENST00000452182 M0R2T5 61 aa5.68□□□□□ -1.5
SCN9A-204ENST00000452182 COX7CP15954 63 aa5.68□□□□□ -1.5
SCN9A-204ENST00000452182 C20orf197Q8N268 126 aa5.66□□□□□ -1.5
SCN9A-204ENST00000452182 A8MUN3 132 aa5.66□□□□□ -1.5
SCN9A-204ENST00000452182 SNURFQ9Y675 71 aa5.66□□□□□ -1.5
SCN9A-204ENST00000452182 ANAPC13Q9BS18 74 aa5.64□□□□□ -1.51
SCN9A-204ENST00000452182 KRTAP10-6P60371 365 aaPredicted RBP5.62□□□□□ -1.51
SCN9A-204ENST00000452182 DMAC1Q96GE9 116 aa5.6□□□□□ -1.51
SCN9A-204ENST00000452182 S4R3F8 94 aa5.6□□□□□ -1.51
SCN9A-204ENST00000452182 LCA10Q71F78 164 aa5.58□□□□□ -1.52
SCN9A-204ENST00000452182 SPANXA2-OT1Q8N9U9 137 aa5.58□□□□□ -1.52
SCN9A-204ENST00000452182 NDUFC1O43677 76 aa5.57□□□□□ -1.52
SCN9A-204ENST00000452182 CSAG1Q6PB30 78 aa5.53□□□□□ -1.52
SCN9A-204ENST00000452182 KRTAP9-8Q9BYQ0 159 aa5.53□□□□□ -1.52
SCN9A-204ENST00000452182 H7BZZ5 65 aa5.52□□□□□ -1.53
SCN9A-204ENST00000452182 ACYP2P14621 99 aa5.52□□□□□ -1.53
SCN9A-204ENST00000452182 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
SCN9A-204ENST00000452182 CYSTM1Q9H1C7 97 aa5.52□□□□□ -1.53
SCN9A-204ENST00000452182 CCDC179H3BU77 68 aa5.51□□□□□ -1.53
SCN9A-204ENST00000452182 KRTAP4-7Q9BYR0 210 aa5.51□□□□□ -1.53
SCN9A-204ENST00000452182 MT2AP02795 61 aa5.48□□□□□ -1.53
SCN9A-204ENST00000452182 MT1FP04733 61 aa5.43□□□□□ -1.54
SCN9A-204ENST00000452182 H0YAA0 97 aa5.41□□□□□ -1.54
SCN9A-204ENST00000452182 KRTAP10-10P60014 251 aa5.41□□□□□ -1.54
SCN9A-204ENST00000452182 KRTAP4-11Q9BYQ6 195 aa5.41□□□□□ -1.54
SCN9A-204ENST00000452182 CHKB-CPT1BH3BT56 60 aa5.4□□□□□ -1.55
SCN9A-204ENST00000452182 SPTSSBQ8NFR3 76 aa5.39□□□□□ -1.55
SCN9A-204ENST00000452182 ATP5EP56381 51 aaPredicted RBP5.37□□□□□ -1.55
SCN9A-204ENST00000452182 COA5Q86WW8 74 aa5.37□□□□□ -1.55
SCN9A-204ENST00000452182 TMEM258P61165 79 aa5.35□□□□□ -1.55
SCN9A-204ENST00000452182 ADM2Q7Z4H4 148 aa5.3□□□□□ -1.56
SCN9A-204ENST00000452182 CRIPTQ9P021 101 aa5.29□□□□□ -1.56
SCN9A-204ENST00000452182 KRTAP4-2Q9BYR5 136 aa5.24□□□□□ -1.57
SCN9A-204ENST00000452182 P0C880 135 aa5.23□□□□□ -1.57
SCN9A-204ENST00000452182 SPRR2GQ9BYE4 73 aa5.23□□□□□ -1.57
SCN9A-204ENST00000452182 USH2AO75445 5202 aa5.19□□□□□ -1.58
SCN9A-204ENST00000452182 FSIP2Q5CZC0 6907 aa5.19□□□□□ -1.58
SCN9A-204ENST00000452182 SERP1Q9Y6X1 66 aa5.18□□□□□ -1.58
SCN9A-204ENST00000452182 SEC61GP60059 68 aa5.15□□□□□ -1.58
SCN9A-204ENST00000452182 R4GN34 69 aa5.15□□□□□ -1.58
SCN9A-204ENST00000452182 KRTAP19-8Q3LI54 63 aa5.14□□□□□ -1.59
SCN9A-204ENST00000452182 M0QZ58 72 aa5.12□□□□□ -1.59
SCN9A-204ENST00000452182 A0A1B0GU69 56 aa5.09□□□□□ -1.59
SCN9A-204ENST00000452182 Q5VV11 94 aa5.09□□□□□ -1.59
SCN9A-204ENST00000452182 CRCT1Q9UGL9 99 aa5.09□□□□□ -1.59
SCN9A-204ENST00000452182 LINC01558Q9Y6Z2 57 aa5.08□□□□□ -1.6
SCN9A-204ENST00000452182 MT1BP07438 61 aa5.08□□□□□ -1.6
SCN9A-204ENST00000452182 SSPOA2VEC9 5147 aa5.08□□□□□ -1.6
SCN9A-204ENST00000452182 RPS28P62857 69 aaKnown RBP5.05□□□□□ -1.6
SCN9A-204ENST00000452182 PRR15LQ9BU68 103 aa5.05□□□□□ -1.6
SCN9A-204ENST00000452182 A0A1B0GU33 70 aa5.04□□□□□ -1.6
SCN9A-204ENST00000452182 KRTAP19-6Q3LI70 58 aa5.02□□□□□ -1.61
SCN9A-204ENST00000452182 KRTAP13-4Q3LI77 160 aa5.02□□□□□ -1.61
SCN9A-204ENST00000452182 LINC01554Q52M75 96 aa5.01□□□□□ -1.61
SCN9A-204ENST00000452182 V9GYY9 64 aa5.01□□□□□ -1.61
SCN9A-204ENST00000452182 SMIM26A0A096LP01 95 aa5□□□□□ -1.61
SCN9A-204ENST00000452182 Q1T7F1 81 aa4.99□□□□□ -1.61
SCN9A-204ENST00000452182 A6NN06 94 aa4.98□□□□□ -1.61
SCN9A-204ENST00000452182 LCE1AQ5T7P2 110 aa4.97□□□□□ -1.61
SCN9A-204ENST00000452182 PLAC4Q8WY50 150 aa4.97□□□□□ -1.61
SCN9A-204ENST00000452182 PRAC1Q96KF2 57 aa4.96□□□□□ -1.62
SCN9A-204ENST00000452182 SPATA8Q6RVD6 105 aa4.95□□□□□ -1.62
SCN9A-204ENST00000452182 FCGBPQ9Y6R7 5405 aaPredicted RBP4.92□□□□□ -1.62
SCN9A-204ENST00000452182 KRTAP10-5P60370 271 aa4.9□□□□□ -1.62
SCN9A-204ENST00000452182 UQCR11O14957 56 aa4.9□□□□□ -1.63
SCN9A-204ENST00000452182 PSPHP1O15172 72 aa4.88□□□□□ -1.63
SCN9A-204ENST00000452182 A0A0D9SG42 100 aa4.87□□□□□ -1.63
SCN9A-204ENST00000452182 PRO2289Q9P1D8 64 aa4.86□□□□□ -1.63
SCN9A-204ENST00000452182 MT1XP80297 61 aa4.85□□□□□ -1.63
SCN9A-204ENST00000452182 A8MU10 97 aa4.83□□□□□ -1.64
SCN9A-204ENST00000452182 KRTAP12-1P59990 96 aa4.82□□□□□ -1.64
SCN9A-204ENST00000452182 MIR22HGQ0VDD5 57 aa4.8□□□□□ -1.64
SCN9A-204ENST00000452182 SPINT4Q6UDR6 99 aa4.8□□□□□ -1.64
SCN9A-204ENST00000452182 KRTAP12-2P59991 146 aa4.79□□□□□ -1.64
SCN9A-204ENST00000452182 CAMK2N1Q7Z7J9 78 aa4.78□□□□□ -1.64
SCN9A-204ENST00000452182 MT3P25713 68 aa4.75□□□□□ -1.65
SCN9A-204ENST00000452182 KRTAP5-3Q6L8H2 238 aa4.75□□□□□ -1.65
SCN9A-204ENST00000452182 A6NED7 52 aa4.74□□□□□ -1.65
SCN9A-204ENST00000452182 MACF1Q9UPN3 7388 aaKnown RBP4.73□□□□□ -1.65
SCN9A-204ENST00000452182 NDUFAF8A1L188 74 aa4.68□□□□□ -1.66
SCN9A-204ENST00000452182 K7ERS5 55 aa4.64□□□□□ -1.67
SCN9A-204ENST00000452182 SYNE2Q8WXH0 6885 aaKnown RBP4.63□□□□□ -1.67
SCN9A-204ENST00000452182 CDC42SE1Q9NRR8 79 aa4.63□□□□□ -1.67
SCN9A-204ENST00000452182 KRTAP10-7P60409 375 aaPredicted RBP4.62□□□□□ -1.67
SCN9A-204ENST00000452182 KRTAP10-12P60413 245 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms