RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 MUC2Q02817 5179 aa7.13□□□□□ -1.27
USP39-207ENST00000450066 S4R3F8 94 aa7.11□□□□□ -1.27
USP39-207ENST00000450066 PSPHP1O15172 72 aa7.1□□□□□ -1.27
USP39-207ENST00000450066 LCA10Q71F78 164 aa7.1□□□□□ -1.27
USP39-207ENST00000450066 PRR15LQ9BU68 103 aa7.08□□□□□ -1.28
USP39-207ENST00000450066 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
USP39-207ENST00000450066 UBR4Q5T4S7 5183 aa7.05□□□□□ -1.28
USP39-207ENST00000450066 Q5VV11 94 aa7.04□□□□□ -1.28
USP39-207ENST00000450066 A0A1B0GU69 56 aa7.03□□□□□ -1.28
USP39-207ENST00000450066 KRTAP19-2Q3LHN2 52 aa7.03□□□□□ -1.28
USP39-207ENST00000450066 RNF213Q63HN8 5207 aa6.98□□□□□ -1.29
USP39-207ENST00000450066 SEC61GP60059 68 aa6.98□□□□□ -1.29
USP39-207ENST00000450066 SVIPQ8NHG7 77 aa6.98□□□□□ -1.29
USP39-207ENST00000450066 CSAG1Q6PB30 78 aa6.96□□□□□ -1.3
USP39-207ENST00000450066 FLGP20930 4061 aaPredicted RBP6.94□□□□□ -1.3
USP39-207ENST00000450066 A6NED7 52 aa6.89□□□□□ -1.31
USP39-207ENST00000450066 LCE2CQ5TA81 110 aa6.85□□□□□ -1.31
USP39-207ENST00000450066 BRK1Q8WUW1 75 aa6.84□□□□□ -1.31
USP39-207ENST00000450066 KRTAP3-2Q9BYR7 98 aa6.84□□□□□ -1.31
USP39-207ENST00000450066 UQCR11O14957 56 aa6.83□□□□□ -1.32
USP39-207ENST00000450066 KRTAP10-6P60371 365 aaPredicted RBP6.83□□□□□ -1.32
USP39-207ENST00000450066 H0YAA0 97 aa6.82□□□□□ -1.32
USP39-207ENST00000450066 A0A1B0GU33 70 aa6.81□□□□□ -1.32
USP39-207ENST00000450066 ADM2Q7Z4H4 148 aa6.8□□□□□ -1.32
USP39-207ENST00000450066 FAT4Q6V0I7 4981 aa6.8□□□□□ -1.32
USP39-207ENST00000450066 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
USP39-207ENST00000450066 P0C880 135 aa6.77□□□□□ -1.33
USP39-207ENST00000450066 MIR22HGQ0VDD5 57 aa6.75□□□□□ -1.33
USP39-207ENST00000450066 SPATA8Q6RVD6 105 aa6.75□□□□□ -1.33
USP39-207ENST00000450066 A8MU10 97 aa6.73□□□□□ -1.33
USP39-207ENST00000450066 PRO0628Q9UI54 55 aa6.73□□□□□ -1.33
USP39-207ENST00000450066 MT1HP80294 61 aa6.7□□□□□ -1.34
USP39-207ENST00000450066 M0R2T5 61 aa6.64□□□□□ -1.35
USP39-207ENST00000450066 KRTAP13-4Q3LI77 160 aa6.64□□□□□ -1.35
USP39-207ENST00000450066 M0QZ58 72 aa6.62□□□□□ -1.35
USP39-207ENST00000450066 R4GN34 69 aa6.57□□□□□ -1.36
USP39-207ENST00000450066 LORP23490 312 aaPredicted RBP6.56□□□□□ -1.36
USP39-207ENST00000450066 A0A0D9SG42 100 aa6.52□□□□□ -1.37
USP39-207ENST00000450066 CRIPTQ9P021 101 aa6.51□□□□□ -1.37
USP39-207ENST00000450066 PMAIP1Q13794 54 aa6.48□□□□□ -1.37
USP39-207ENST00000450066 KRTAP9-8Q9BYQ0 159 aa6.47□□□□□ -1.37
USP39-207ENST00000450066 MT2AP02795 61 aa6.45□□□□□ -1.38
USP39-207ENST00000450066 K7ERS5 55 aa6.45□□□□□ -1.38
USP39-207ENST00000450066 A6NN06 94 aa6.43□□□□□ -1.38
USP39-207ENST00000450066 LINC01554Q52M75 96 aa6.43□□□□□ -1.38
USP39-207ENST00000450066 LCE2AQ5TA79 106 aaPredicted RBP6.41□□□□□ -1.38
USP39-207ENST00000450066 MT1FP04733 61 aa6.41□□□□□ -1.38
USP39-207ENST00000450066 KRTAP10-10P60014 251 aa6.4□□□□□ -1.38
USP39-207ENST00000450066 KRTAP12-1P59990 96 aa6.4□□□□□ -1.39
USP39-207ENST00000450066 KRTAP12-2P59991 146 aa6.38□□□□□ -1.39
USP39-207ENST00000450066 SPINT4Q6UDR6 99 aa6.37□□□□□ -1.39
USP39-207ENST00000450066 SPRR2GQ9BYE4 73 aa6.36□□□□□ -1.39
USP39-207ENST00000450066 KRTAP19-1Q8IUB9 90 aa6.33□□□□□ -1.4
USP39-207ENST00000450066 KRTAP9-3Q9BYQ3 159 aa6.23□□□□□ -1.41
USP39-207ENST00000450066 KTN1-AS1Q86SY8 53 aa6.21□□□□□ -1.41
USP39-207ENST00000450066 ROMO1P60602 79 aa6.18□□□□□ -1.42
USP39-207ENST00000450066 KRTAP19-8Q3LI54 63 aa6.18□□□□□ -1.42
USP39-207ENST00000450066 CAMK2N1Q7Z7J9 78 aa6.15□□□□□ -1.42
USP39-207ENST00000450066 PLAC4Q8WY50 150 aa6.15□□□□□ -1.42
USP39-207ENST00000450066 MT1BP07438 61 aa6.08□□□□□ -1.44
USP39-207ENST00000450066 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
USP39-207ENST00000450066 LCE2BO14633 110 aa6.05□□□□□ -1.44
USP39-207ENST00000450066 PRAC1Q96KF2 57 aa6.04□□□□□ -1.44
USP39-207ENST00000450066 USH2AO75445 5202 aa5.93□□□□□ -1.46
USP39-207ENST00000450066 KRTAP25-1Q3LHN0 102 aa5.91□□□□□ -1.46
USP39-207ENST00000450066 MT1XP80297 61 aa5.9□□□□□ -1.47
USP39-207ENST00000450066 KRTAP10-5P60370 271 aa5.89□□□□□ -1.47
USP39-207ENST00000450066 TNP1P09430 55 aa5.86□□□□□ -1.47
USP39-207ENST00000450066 PRO2289Q9P1D8 64 aa5.84□□□□□ -1.47
USP39-207ENST00000450066 KRTAP9-6A0A140TA67 174 aa5.82□□□□□ -1.48
USP39-207ENST00000450066 KRTAP9-2Q9BYQ4 174 aa5.81□□□□□ -1.48
USP39-207ENST00000450066 LCE2DQ5TA82 110 aaPredicted RBP5.81□□□□□ -1.48
USP39-207ENST00000450066 SSPOA2VEC9 5147 aa5.74□□□□□ -1.49
USP39-207ENST00000450066 PP632Q6XCG6 107 aa5.73□□□□□ -1.49
USP39-207ENST00000450066 KRTAP23-1A1A580 65 aa5.71□□□□□ -1.49
USP39-207ENST00000450066 FSIP2Q5CZC0 6907 aa5.71□□□□□ -1.5
USP39-207ENST00000450066 KRTAP19-6Q3LI70 58 aa5.67□□□□□ -1.5
USP39-207ENST00000450066 KRTAP10-7P60409 375 aaPredicted RBP5.66□□□□□ -1.5
USP39-207ENST00000450066 KRTAP10-12P60413 245 aa5.61□□□□□ -1.51
USP39-207ENST00000450066 LCE3AQ5TA76 89 aa5.6□□□□□ -1.51
USP39-207ENST00000450066 H3BS24 57 aa5.54□□□□□ -1.52
USP39-207ENST00000450066 KRTAP8-1Q8IUC2 63 aa5.5□□□□□ -1.53
USP39-207ENST00000450066 FCGBPQ9Y6R7 5405 aaPredicted RBP5.48□□□□□ -1.53
USP39-207ENST00000450066 KMT2DO14686 5537 aa5.46□□□□□ -1.54
USP39-207ENST00000450066 CRCT1Q9UGL9 99 aa5.43□□□□□ -1.54
USP39-207ENST00000450066 KRTAP4-8A0A0G2JLE6 195 aa5.42□□□□□ -1.54
USP39-207ENST00000450066 KRTAP4-8Q9BYQ9 185 aa5.42□□□□□ -1.54
USP39-207ENST00000450066 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
USP39-207ENST00000450066 KRTAP19-5Q3LI72 72 aa5.34□□□□□ -1.55
USP39-207ENST00000450066 KRTAP15-1Q3LI76 137 aa5.28□□□□□ -1.56
USP39-207ENST00000450066 A0A0A0MQY5 61 aa5.27□□□□□ -1.57
USP39-207ENST00000450066 KRTAP19-7Q3SYF9 63 aa5.27□□□□□ -1.57
USP39-207ENST00000450066 MACF1Q9UPN3 7388 aaKnown RBP5.24□□□□□ -1.57
USP39-207ENST00000450066 MT1EP04732 61 aa5.17□□□□□ -1.58
USP39-207ENST00000450066 KRTAP9-7A8MTY7 169 aa5.16□□□□□ -1.58
USP39-207ENST00000450066 SPRR5A0A1B0GTR4 108 aa5.09□□□□□ -1.59
USP39-207ENST00000450066 SYNE2Q8WXH0 6885 aaKnown RBP5.08□□□□□ -1.6
USP39-207ENST00000450066 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.07□□□□□ -1.6
USP39-207ENST00000450066 MT1LQ93083 61 aa5.07□□□□□ -1.6
USP39-207ENST00000450066 KRTAP19-4Q3LI73 84 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms