RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 KRTAP9-8Q9BYQ0 159 aa8.4□□□□□ -1.06
LIME1-202ENST00000444951 S4R3F8 94 aa8.37□□□□□ -1.07
LIME1-202ENST00000444951 A8MUN3 132 aa8.34□□□□□ -1.07
LIME1-202ENST00000444951 CCDC179H3BU77 68 aa8.32□□□□□ -1.08
LIME1-202ENST00000444951 LCA10Q71F78 164 aa8.31□□□□□ -1.08
LIME1-202ENST00000444951 DMAC1Q96GE9 116 aa8.31□□□□□ -1.08
LIME1-202ENST00000444951 CYSTM1Q9H1C7 97 aa8.31□□□□□ -1.08
LIME1-202ENST00000444951 FCGBPQ9Y6R7 5405 aaPredicted RBP8.3□□□□□ -1.08
LIME1-202ENST00000444951 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.29□□□□□ -1.08
LIME1-202ENST00000444951 KRTAP9-7A8MTY7 169 aa8.25□□□□□ -1.09
LIME1-202ENST00000444951 NDUFC1O43677 76 aa8.25□□□□□ -1.09
LIME1-202ENST00000444951 MT2AP02795 61 aa8.25□□□□□ -1.09
LIME1-202ENST00000444951 SPANXA2-OT1Q8N9U9 137 aa8.24□□□□□ -1.09
LIME1-202ENST00000444951 H7BZZ5 65 aa8.23□□□□□ -1.09
LIME1-202ENST00000444951 ACYP2P14621 99 aa8.22□□□□□ -1.09
LIME1-202ENST00000444951 CSAG1Q6PB30 78 aa8.22□□□□□ -1.09
LIME1-202ENST00000444951 KRTAP3-3Q9BYR6 98 aa8.21□□□□□ -1.1
LIME1-202ENST00000444951 MT1FP04733 61 aa8.2□□□□□ -1.1
LIME1-202ENST00000444951 LCE2BO14633 110 aa8.19□□□□□ -1.1
LIME1-202ENST00000444951 KRTAP9-3Q9BYQ3 159 aa8.14□□□□□ -1.11
LIME1-202ENST00000444951 CHKB-CPT1BH3BT56 60 aa8.13□□□□□ -1.11
LIME1-202ENST00000444951 KRTAP19-1Q8IUB9 90 aa8.13□□□□□ -1.11
LIME1-202ENST00000444951 KRTAP10-10P60014 251 aa8.09□□□□□ -1.11
LIME1-202ENST00000444951 COA5Q86WW8 74 aa8.05□□□□□ -1.12
LIME1-202ENST00000444951 MACF1Q9UPN3 7388 aaKnown RBP8.05□□□□□ -1.12
LIME1-202ENST00000444951 SPTSSBQ8NFR3 76 aa8.02□□□□□ -1.13
LIME1-202ENST00000444951 PCP4P48539 62 aa8.01□□□□□ -1.13
LIME1-202ENST00000444951 SYNE2Q8WXH0 6885 aaKnown RBP7.99□□□□□ -1.13
LIME1-202ENST00000444951 ATP5EP56381 51 aaPredicted RBP7.98□□□□□ -1.13
LIME1-202ENST00000444951 TMEM258P61165 79 aa7.98□□□□□ -1.13
LIME1-202ENST00000444951 ADM2Q7Z4H4 148 aa7.95□□□□□ -1.14
LIME1-202ENST00000444951 H0YAA0 97 aa7.91□□□□□ -1.14
LIME1-202ENST00000444951 KRTAP19-6Q3LI70 58 aa7.88□□□□□ -1.15
LIME1-202ENST00000444951 P0C880 135 aa7.83□□□□□ -1.16
LIME1-202ENST00000444951 KRTAP3-2Q9BYR7 98 aa7.81□□□□□ -1.16
LIME1-202ENST00000444951 CRIPTQ9P021 101 aa7.75□□□□□ -1.17
LIME1-202ENST00000444951 SERP1Q9Y6X1 66 aa7.75□□□□□ -1.17
LIME1-202ENST00000444951 SEC61GP60059 68 aa7.72□□□□□ -1.17
LIME1-202ENST00000444951 SPRR2GQ9BYE4 73 aa7.69□□□□□ -1.18
LIME1-202ENST00000444951 R4GN34 69 aa7.69□□□□□ -1.18
LIME1-202ENST00000444951 M0QZ58 72 aa7.68□□□□□ -1.18
LIME1-202ENST00000444951 KRTAP6-3Q3LI67 103 aa7.64□□□□□ -1.19
LIME1-202ENST00000444951 A0A1B0GU69 56 aa7.63□□□□□ -1.19
LIME1-202ENST00000444951 LINC01554Q52M75 96 aa7.59□□□□□ -1.19
LIME1-202ENST00000444951 NEBP20929 6669 aa7.57□□□□□ -1.2
LIME1-202ENST00000444951 Q5VV11 94 aa7.57□□□□□ -1.2
LIME1-202ENST00000444951 KRTAP19-8Q3LI54 63 aa7.56□□□□□ -1.2
LIME1-202ENST00000444951 LINC01558Q9Y6Z2 57 aa7.56□□□□□ -1.2
LIME1-202ENST00000444951 MUC12Q9UKN1 5478 aa7.56□□□□□ -1.2
LIME1-202ENST00000444951 PRR15LQ9BU68 103 aa7.54□□□□□ -1.2
LIME1-202ENST00000444951 A0A1B0GU33 70 aa7.53□□□□□ -1.2
LIME1-202ENST00000444951 MT1BP07438 61 aa7.52□□□□□ -1.21
LIME1-202ENST00000444951 KRTAP13-4Q3LI77 160 aa7.51□□□□□ -1.21
LIME1-202ENST00000444951 SMIM26A0A096LP01 95 aa7.48□□□□□ -1.21
LIME1-202ENST00000444951 RPS28P62857 69 aaKnown RBP7.47□□□□□ -1.21
LIME1-202ENST00000444951 SPATA8Q6RVD6 105 aa7.47□□□□□ -1.21
LIME1-202ENST00000444951 V9GYY9 64 aa7.43□□□□□ -1.22
LIME1-202ENST00000444951 PLAC4Q8WY50 150 aa7.42□□□□□ -1.22
LIME1-202ENST00000444951 A0A0D9SG42 100 aa7.41□□□□□ -1.22
LIME1-202ENST00000444951 Q1T7F1 81 aa7.41□□□□□ -1.22
LIME1-202ENST00000444951 A6NN06 94 aa7.4□□□□□ -1.22
LIME1-202ENST00000444951 PSPHP1O15172 72 aa7.4□□□□□ -1.22
LIME1-202ENST00000444951 MDN1Q9NU22 5596 aa7.34□□□□□ -1.23
LIME1-202ENST00000444951 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
LIME1-202ENST00000444951 A8MU10 97 aa7.3□□□□□ -1.24
LIME1-202ENST00000444951 UQCR11O14957 56 aa7.29□□□□□ -1.24
LIME1-202ENST00000444951 KMT2DO14686 5537 aa7.28□□□□□ -1.24
LIME1-202ENST00000444951 SPINT4Q6UDR6 99 aa7.26□□□□□ -1.25
LIME1-202ENST00000444951 KRTAP5-9P26371 169 aa7.2□□□□□ -1.26
LIME1-202ENST00000444951 KRTAP12-1P59990 96 aa7.2□□□□□ -1.26
LIME1-202ENST00000444951 MIR22HGQ0VDD5 57 aa7.2□□□□□ -1.26
LIME1-202ENST00000444951 KRTAP20-1Q3LI63 56 aa7.19□□□□□ -1.26
LIME1-202ENST00000444951 MT1XP80297 61 aa7.18□□□□□ -1.26
LIME1-202ENST00000444951 CAMK2N1Q7Z7J9 78 aa7.18□□□□□ -1.26
LIME1-202ENST00000444951 A6NED7 52 aa7.17□□□□□ -1.26
LIME1-202ENST00000444951 KRTAP12-2P59991 146 aa7.17□□□□□ -1.26
LIME1-202ENST00000444951 PRO2289Q9P1D8 64 aa7.17□□□□□ -1.26
LIME1-202ENST00000444951 K7ERS5 55 aa6.96□□□□□ -1.3
LIME1-202ENST00000444951 SPRR2FQ96RM1 72 aa6.93□□□□□ -1.3
LIME1-202ENST00000444951 KRTAP2-3P0C7H8 128 aa6.92□□□□□ -1.3
LIME1-202ENST00000444951 KRTAP2-4Q9BYR9 128 aa6.92□□□□□ -1.3
LIME1-202ENST00000444951 CDC42SE1Q9NRR8 79 aa6.91□□□□□ -1.3
LIME1-202ENST00000444951 KRTAP10-7P60409 375 aaPredicted RBP6.9□□□□□ -1.3
LIME1-202ENST00000444951 SPRR2EP22531 72 aa6.89□□□□□ -1.31
LIME1-202ENST00000444951 SPRR2BP35325 72 aa6.89□□□□□ -1.31
LIME1-202ENST00000444951 SPRR2AP35326 72 aa6.89□□□□□ -1.31
LIME1-202ENST00000444951 C10orf95Q9H7T3 257 aa6.84□□□□□ -1.31
LIME1-202ENST00000444951 KRTAP8-1Q8IUC2 63 aa6.81□□□□□ -1.32
LIME1-202ENST00000444951 KRTAP10-12P60413 245 aa6.79□□□□□ -1.32
LIME1-202ENST00000444951 LCE1AQ5T7P2 110 aa6.79□□□□□ -1.32
LIME1-202ENST00000444951 BRK1Q8WUW1 75 aa6.76□□□□□ -1.33
LIME1-202ENST00000444951 KRTAP4-8A0A0G2JLE6 195 aa6.74□□□□□ -1.33
LIME1-202ENST00000444951 KRTAP4-8Q9BYQ9 185 aa6.74□□□□□ -1.33
LIME1-202ENST00000444951 TNP1P09430 55 aa6.71□□□□□ -1.34
LIME1-202ENST00000444951 KRTAP2-2Q9BYT5 123 aa6.68□□□□□ -1.34
LIME1-202ENST00000444951 KRTAP2-1Q9BYU5 128 aa6.68□□□□□ -1.34
LIME1-202ENST00000444951 SPRR2DP22532 72 aa6.65□□□□□ -1.34
LIME1-202ENST00000444951 ROMO1P60602 79 aa6.58□□□□□ -1.36
LIME1-202ENST00000444951 KRTAP25-1Q3LHN0 102 aa6.57□□□□□ -1.36
LIME1-202ENST00000444951 LCE3AQ5TA76 89 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms