RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 LCA10Q71F78 164 aa7.61□□□□□ -1.19
USP40-206ENST00000443711 LCE2BO14633 110 aa7.6□□□□□ -1.19
USP40-206ENST00000443711 LORP23490 312 aaPredicted RBP7.6□□□□□ -1.19
USP40-206ENST00000443711 CCDC179H3BU77 68 aa7.59□□□□□ -1.19
USP40-206ENST00000443711 ACYP2P14621 99 aa7.59□□□□□ -1.19
USP40-206ENST00000443711 CSAG1Q6PB30 78 aa7.58□□□□□ -1.2
USP40-206ENST00000443711 CYSTM1Q9H1C7 97 aa7.57□□□□□ -1.2
USP40-206ENST00000443711 H7BZZ5 65 aa7.56□□□□□ -1.2
USP40-206ENST00000443711 KRTAP9-6A0A140TA67 174 aa7.52□□□□□ -1.21
USP40-206ENST00000443711 KRTAP9-8Q9BYQ0 159 aa7.51□□□□□ -1.21
USP40-206ENST00000443711 MT2AP02795 61 aa7.46□□□□□ -1.22
USP40-206ENST00000443711 CHKB-CPT1BH3BT56 60 aa7.45□□□□□ -1.22
USP40-206ENST00000443711 SPTSSBQ8NFR3 76 aa7.42□□□□□ -1.22
USP40-206ENST00000443711 KRTAP10-10P60014 251 aa7.4□□□□□ -1.22
USP40-206ENST00000443711 MT1FP04733 61 aa7.39□□□□□ -1.23
USP40-206ENST00000443711 COA5Q86WW8 74 aa7.38□□□□□ -1.23
USP40-206ENST00000443711 ATP5EP56381 51 aaPredicted RBP7.37□□□□□ -1.23
USP40-206ENST00000443711 TMEM258P61165 79 aa7.35□□□□□ -1.23
USP40-206ENST00000443711 H0YAA0 97 aa7.34□□□□□ -1.23
USP40-206ENST00000443711 PCP4P48539 62 aa7.32□□□□□ -1.24
USP40-206ENST00000443711 FSIP2Q5CZC0 6907 aa7.29□□□□□ -1.24
USP40-206ENST00000443711 ADM2Q7Z4H4 148 aa7.28□□□□□ -1.24
USP40-206ENST00000443711 CRCT1Q9UGL9 99 aa7.27□□□□□ -1.25
USP40-206ENST00000443711 KRTAP9-3Q9BYQ3 159 aa7.26□□□□□ -1.25
USP40-206ENST00000443711 CRIPTQ9P021 101 aa7.19□□□□□ -1.26
USP40-206ENST00000443711 P0C880 135 aa7.16□□□□□ -1.26
USP40-206ENST00000443711 SERP1Q9Y6X1 66 aa7.13□□□□□ -1.27
USP40-206ENST00000443711 SEC61GP60059 68 aa7.11□□□□□ -1.27
USP40-206ENST00000443711 KRTAP19-1Q8IUB9 90 aa7.11□□□□□ -1.27
USP40-206ENST00000443711 SPRR2GQ9BYE4 73 aa7.11□□□□□ -1.27
USP40-206ENST00000443711 R4GN34 69 aa7.06□□□□□ -1.28
USP40-206ENST00000443711 M0QZ58 72 aa7.03□□□□□ -1.28
USP40-206ENST00000443711 A0A1B0GU69 56 aa7.01□□□□□ -1.29
USP40-206ENST00000443711 KRTAP19-8Q3LI54 63 aa6.99□□□□□ -1.29
USP40-206ENST00000443711 USH2AO75445 5202 aa6.98□□□□□ -1.29
USP40-206ENST00000443711 LINC01558Q9Y6Z2 57 aa6.98□□□□□ -1.29
USP40-206ENST00000443711 Q5VV11 94 aa6.96□□□□□ -1.3
USP40-206ENST00000443711 PRR15LQ9BU68 103 aa6.95□□□□□ -1.3
USP40-206ENST00000443711 A0A1B0GU33 70 aa6.93□□□□□ -1.3
USP40-206ENST00000443711 RPS28P62857 69 aaKnown RBP6.93□□□□□ -1.3
USP40-206ENST00000443711 MT1BP07438 61 aa6.91□□□□□ -1.3
USP40-206ENST00000443711 LINC01554Q52M75 96 aa6.9□□□□□ -1.3
USP40-206ENST00000443711 SMIM26A0A096LP01 95 aa6.89□□□□□ -1.31
USP40-206ENST00000443711 V9GYY9 64 aa6.88□□□□□ -1.31
USP40-206ENST00000443711 KRTAP13-4Q3LI77 160 aa6.87□□□□□ -1.31
USP40-206ENST00000443711 Q1T7F1 81 aa6.84□□□□□ -1.31
USP40-206ENST00000443711 PLAC4Q8WY50 150 aa6.83□□□□□ -1.32
USP40-206ENST00000443711 SSPOA2VEC9 5147 aa6.82□□□□□ -1.32
USP40-206ENST00000443711 SPATA8Q6RVD6 105 aa6.81□□□□□ -1.32
USP40-206ENST00000443711 KRTAP19-6Q3LI70 58 aa6.8□□□□□ -1.32
USP40-206ENST00000443711 A6NN06 94 aa6.77□□□□□ -1.33
USP40-206ENST00000443711 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.77□□□□□ -1.33
USP40-206ENST00000443711 KRTAP9-7A8MTY7 169 aa6.75□□□□□ -1.33
USP40-206ENST00000443711 PSPHP1O15172 72 aa6.74□□□□□ -1.33
USP40-206ENST00000443711 A0A0D9SG42 100 aa6.73□□□□□ -1.33
USP40-206ENST00000443711 UQCR11O14957 56 aa6.72□□□□□ -1.33
USP40-206ENST00000443711 FCGBPQ9Y6R7 5405 aaPredicted RBP6.69□□□□□ -1.34
USP40-206ENST00000443711 LOC100996750A0A140TA64 210 aa6.68□□□□□ -1.34
USP40-206ENST00000443711 KRTAP4-6Q9BYQ5 205 aa6.68□□□□□ -1.34
USP40-206ENST00000443711 KRTAP10-5P60370 271 aa6.66□□□□□ -1.34
USP40-206ENST00000443711 A8MU10 97 aa6.65□□□□□ -1.34
USP40-206ENST00000443711 SPINT4Q6UDR6 99 aa6.62□□□□□ -1.35
USP40-206ENST00000443711 PRO2289Q9P1D8 64 aa6.62□□□□□ -1.35
USP40-206ENST00000443711 MIR22HGQ0VDD5 57 aa6.61□□□□□ -1.35
USP40-206ENST00000443711 KRTAP12-1P59990 96 aa6.6□□□□□ -1.35
USP40-206ENST00000443711 MT1XP80297 61 aa6.59□□□□□ -1.35
USP40-206ENST00000443711 CAMK2N1Q7Z7J9 78 aa6.58□□□□□ -1.36
USP40-206ENST00000443711 A6NED7 52 aa6.55□□□□□ -1.36
USP40-206ENST00000443711 KRTAP12-2P59991 146 aa6.55□□□□□ -1.36
USP40-206ENST00000443711 SYNE2Q8WXH0 6885 aaKnown RBP6.52□□□□□ -1.37
USP40-206ENST00000443711 MACF1Q9UPN3 7388 aaKnown RBP6.51□□□□□ -1.37
USP40-206ENST00000443711 K7ERS5 55 aa6.42□□□□□ -1.38
USP40-206ENST00000443711 CDC42SE1Q9NRR8 79 aa6.37□□□□□ -1.39
USP40-206ENST00000443711 KRTAP10-7P60409 375 aaPredicted RBP6.3□□□□□ -1.4
USP40-206ENST00000443711 C10orf95Q9H7T3 257 aa6.28□□□□□ -1.4
USP40-206ENST00000443711 KRTAP10-12P60413 245 aa6.27□□□□□ -1.41
USP40-206ENST00000443711 KRTAP6-3Q3LI67 103 aa6.26□□□□□ -1.41
USP40-206ENST00000443711 TNP1P09430 55 aa6.19□□□□□ -1.42
USP40-206ENST00000443711 NEBP20929 6669 aa6.17□□□□□ -1.42
USP40-206ENST00000443711 BRK1Q8WUW1 75 aa6.16□□□□□ -1.42
USP40-206ENST00000443711 KRTAP4-8A0A0G2JLE6 195 aa6.15□□□□□ -1.42
USP40-206ENST00000443711 KRTAP4-8Q9BYQ9 185 aa6.15□□□□□ -1.42
USP40-206ENST00000443711 KRTAP8-1Q8IUC2 63 aa6.13□□□□□ -1.43
USP40-206ENST00000443711 KMT2DO14686 5537 aa6.09□□□□□ -1.43
USP40-206ENST00000443711 KRTAP25-1Q3LHN0 102 aa6.07□□□□□ -1.44
USP40-206ENST00000443711 KRTAP5-9P26371 169 aa6.06□□□□□ -1.44
USP40-206ENST00000443711 ROMO1P60602 79 aa6.05□□□□□ -1.44
USP40-206ENST00000443711 MUC12Q9UKN1 5478 aa6.03□□□□□ -1.44
USP40-206ENST00000443711 SPRR2FQ96RM1 72 aa5.99□□□□□ -1.45
USP40-206ENST00000443711 LCE3AQ5TA76 89 aa5.97□□□□□ -1.45
USP40-206ENST00000443711 KRTAP20-1Q3LI63 56 aa5.92□□□□□ -1.46
USP40-206ENST00000443711 KRTAP19-7Q3SYF9 63 aa5.88□□□□□ -1.47
USP40-206ENST00000443711 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
USP40-206ENST00000443711 KRTAP19-5Q3LI72 72 aa5.87□□□□□ -1.47
USP40-206ENST00000443711 MDN1Q9NU22 5596 aa5.87□□□□□ -1.47
USP40-206ENST00000443711 KRTAP4-12Q9BQ66 201 aa5.85□□□□□ -1.47
USP40-206ENST00000443711 PMAIP1Q13794 54 aa5.83□□□□□ -1.48
USP40-206ENST00000443711 LCE3BQ5TA77 95 aa5.82□□□□□ -1.48
USP40-206ENST00000443711 PRO0628Q9UI54 55 aa5.82□□□□□ -1.48
USP40-206ENST00000443711 MT1EP04732 61 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms