RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 TMEM258P61165 79 aa10.19□□□□□ -0.78
CHD3-204ENST00000439235 S4R3F8 94 aa10.19□□□□□ -0.78
CHD3-204ENST00000439235 MT1HP80294 61 aa10.16□□□□□ -0.78
CHD3-204ENST00000439235 FSIP2Q5CZC0 6907 aa10.14□□□□□ -0.79
CHD3-204ENST00000439235 LCA10Q71F78 164 aa10.1□□□□□ -0.79
CHD3-204ENST00000439235 CRCT1Q9UGL9 99 aa10.1□□□□□ -0.79
CHD3-204ENST00000439235 M0R2T5 61 aa10.08□□□□□ -0.8
CHD3-204ENST00000439235 CHKB-CPT1BH3BT56 60 aa10.06□□□□□ -0.8
CHD3-204ENST00000439235 FLGP20930 4061 aaPredicted RBP10.06□□□□□ -0.8
CHD3-204ENST00000439235 LCE2DQ5TA82 110 aaPredicted RBP10.03□□□□□ -0.8
CHD3-204ENST00000439235 COA5Q86WW8 74 aa10.03□□□□□ -0.8
CHD3-204ENST00000439235 CSAG1Q6PB30 78 aa10□□□□□ -0.81
CHD3-204ENST00000439235 KRTAP3-3Q9BYR6 98 aa10□□□□□ -0.81
CHD3-204ENST00000439235 SPTSSBQ8NFR3 76 aa9.98□□□□□ -0.81
CHD3-204ENST00000439235 SERP1Q9Y6X1 66 aa9.86□□□□□ -0.83
CHD3-204ENST00000439235 KRTAP10-6P60371 365 aaPredicted RBP9.85□□□□□ -0.83
CHD3-204ENST00000439235 LORP23490 312 aaPredicted RBP9.79□□□□□ -0.84
CHD3-204ENST00000439235 H0YAA0 97 aa9.75□□□□□ -0.85
CHD3-204ENST00000439235 KRTAP9-8Q9BYQ0 159 aa9.71□□□□□ -0.86
CHD3-204ENST00000439235 MT2AP02795 61 aa9.67□□□□□ -0.86
CHD3-204ENST00000439235 ADM2Q7Z4H4 148 aa9.66□□□□□ -0.86
CHD3-204ENST00000439235 RPS28P62857 69 aaKnown RBP9.65□□□□□ -0.86
CHD3-204ENST00000439235 MT1FP04733 61 aa9.6□□□□□ -0.87
CHD3-204ENST00000439235 KRTAP10-10P60014 251 aa9.6□□□□□ -0.87
CHD3-204ENST00000439235 SEC61GP60059 68 aa9.6□□□□□ -0.87
CHD3-204ENST00000439235 SMIM26A0A096LP01 95 aa9.55□□□□□ -0.88
CHD3-204ENST00000439235 KRTAP3-2Q9BYR7 98 aa9.55□□□□□ -0.88
CHD3-204ENST00000439235 LINC01558Q9Y6Z2 57 aa9.53□□□□□ -0.88
CHD3-204ENST00000439235 A0A1B0GU69 56 aa9.52□□□□□ -0.89
CHD3-204ENST00000439235 P0C880 135 aa9.52□□□□□ -0.89
CHD3-204ENST00000439235 KRTAP9-7A8MTY7 169 aa9.51□□□□□ -0.89
CHD3-204ENST00000439235 V9GYY9 64 aa9.49□□□□□ -0.89
CHD3-204ENST00000439235 PRR15LQ9BU68 103 aa9.48□□□□□ -0.89
CHD3-204ENST00000439235 CRIPTQ9P021 101 aa9.48□□□□□ -0.89
CHD3-204ENST00000439235 Q1T7F1 81 aa9.43□□□□□ -0.9
CHD3-204ENST00000439235 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.42□□□□□ -0.9
CHD3-204ENST00000439235 KRTAP9-3Q9BYQ3 159 aa9.38□□□□□ -0.91
CHD3-204ENST00000439235 R4GN34 69 aa9.37□□□□□ -0.91
CHD3-204ENST00000439235 A0A1B0GU33 70 aa9.33□□□□□ -0.92
CHD3-204ENST00000439235 M0QZ58 72 aa9.33□□□□□ -0.92
CHD3-204ENST00000439235 SPRR2GQ9BYE4 73 aa9.31□□□□□ -0.92
CHD3-204ENST00000439235 KRTAP19-1Q8IUB9 90 aa9.29□□□□□ -0.92
CHD3-204ENST00000439235 PSPHP1O15172 72 aa9.27□□□□□ -0.93
CHD3-204ENST00000439235 Q5VV11 94 aa9.2□□□□□ -0.94
CHD3-204ENST00000439235 KRTAP13-4Q3LI77 160 aa9.19□□□□□ -0.94
CHD3-204ENST00000439235 LCE2BO14633 110 aa9.16□□□□□ -0.94
CHD3-204ENST00000439235 UQCR11O14957 56 aa9.16□□□□□ -0.94
CHD3-204ENST00000439235 LINC01554Q52M75 96 aa9.15□□□□□ -0.94
CHD3-204ENST00000439235 SPATA8Q6RVD6 105 aa9.15□□□□□ -0.94
CHD3-204ENST00000439235 KRTAP19-8Q3LI54 63 aa9.13□□□□□ -0.95
CHD3-204ENST00000439235 SSPOA2VEC9 5147 aa9.09□□□□□ -0.95
CHD3-204ENST00000439235 USH2AO75445 5202 aa9.08□□□□□ -0.96
CHD3-204ENST00000439235 A0A0D9SG42 100 aa9.03□□□□□ -0.96
CHD3-204ENST00000439235 A6NED7 52 aa9.03□□□□□ -0.96
CHD3-204ENST00000439235 A6NN06 94 aa9.02□□□□□ -0.97
CHD3-204ENST00000439235 MIR22HGQ0VDD5 57 aa9.02□□□□□ -0.97
CHD3-204ENST00000439235 MT1BP07438 61 aa9.01□□□□□ -0.97
CHD3-204ENST00000439235 FCGBPQ9Y6R7 5405 aaPredicted RBP9□□□□□ -0.97
CHD3-204ENST00000439235 A8MU10 97 aa8.96□□□□□ -0.98
CHD3-204ENST00000439235 PLAC4Q8WY50 150 aa8.96□□□□□ -0.98
CHD3-204ENST00000439235 SYNE2Q8WXH0 6885 aaKnown RBP8.95□□□□□ -0.98
CHD3-204ENST00000439235 MACF1Q9UPN3 7388 aaKnown RBP8.88□□□□□ -0.99
CHD3-204ENST00000439235 KRTAP12-1P59990 96 aa8.86□□□□□ -0.99
CHD3-204ENST00000439235 SPINT4Q6UDR6 99 aa8.86□□□□□ -0.99
CHD3-204ENST00000439235 CDC42SE1Q9NRR8 79 aa8.81□□□□□ -1
CHD3-204ENST00000439235 KRTAP12-2P59991 146 aa8.8□□□□□ -1
CHD3-204ENST00000439235 CAMK2N1Q7Z7J9 78 aa8.75□□□□□ -1.01
CHD3-204ENST00000439235 K7ERS5 55 aa8.74□□□□□ -1.01
CHD3-204ENST00000439235 KRTAP19-6Q3LI70 58 aa8.74□□□□□ -1.01
CHD3-204ENST00000439235 PRO2289Q9P1D8 64 aa8.68□□□□□ -1.02
CHD3-204ENST00000439235 KRTAP10-5P60370 271 aa8.66□□□□□ -1.02
CHD3-204ENST00000439235 MT1XP80297 61 aa8.63□□□□□ -1.03
CHD3-204ENST00000439235 BRK1Q8WUW1 75 aa8.63□□□□□ -1.03
CHD3-204ENST00000439235 KRTAP6-3Q3LI67 103 aa8.56□□□□□ -1.04
CHD3-204ENST00000439235 NEBP20929 6669 aa8.44□□□□□ -1.06
CHD3-204ENST00000439235 C10orf95Q9H7T3 257 aa8.38□□□□□ -1.07
CHD3-204ENST00000439235 KRTAP20-1Q3LI63 56 aa8.28□□□□□ -1.08
CHD3-204ENST00000439235 TNP1P09430 55 aa8.26□□□□□ -1.09
CHD3-204ENST00000439235 ROMO1P60602 79 aa8.26□□□□□ -1.09
CHD3-204ENST00000439235 PRO0628Q9UI54 55 aa8.26□□□□□ -1.09
CHD3-204ENST00000439235 KRTAP10-7P60409 375 aaPredicted RBP8.25□□□□□ -1.09
CHD3-204ENST00000439235 MUC12Q9UKN1 5478 aa8.22□□□□□ -1.09
CHD3-204ENST00000439235 KRTAP10-12P60413 245 aa8.21□□□□□ -1.1
CHD3-204ENST00000439235 KRTAP25-1Q3LHN0 102 aa8.18□□□□□ -1.1
CHD3-204ENST00000439235 PMAIP1Q13794 54 aa8.15□□□□□ -1.1
CHD3-204ENST00000439235 KRTAP4-8A0A0G2JLE6 195 aa7.99□□□□□ -1.13
CHD3-204ENST00000439235 KRTAP4-8Q9BYQ9 185 aa7.99□□□□□ -1.13
CHD3-204ENST00000439235 KRTAP8-1Q8IUC2 63 aa7.96□□□□□ -1.14
CHD3-204ENST00000439235 LCE3AQ5TA76 89 aa7.93□□□□□ -1.14
CHD3-204ENST00000439235 KMT2DO14686 5537 aa7.9□□□□□ -1.14
CHD3-204ENST00000439235 KRTAP23-1A1A580 65 aa7.9□□□□□ -1.14
CHD3-204ENST00000439235 MDN1Q9NU22 5596 aa7.89□□□□□ -1.15
CHD3-204ENST00000439235 KRTAP2-3P0C7H8 128 aa7.88□□□□□ -1.15
CHD3-204ENST00000439235 KRTAP2-4Q9BYR9 128 aa7.88□□□□□ -1.15
CHD3-204ENST00000439235 KRTAP5-9P26371 169 aa7.84□□□□□ -1.15
CHD3-204ENST00000439235 PP632Q6XCG6 107 aa7.83□□□□□ -1.16
CHD3-204ENST00000439235 SPRR2FQ96RM1 72 aa7.73□□□□□ -1.17
CHD3-204ENST00000439235 KRTAP19-5Q3LI72 72 aa7.72□□□□□ -1.17
CHD3-204ENST00000439235 KTN1-AS1Q86SY8 53 aa7.71□□□□□ -1.18
CHD3-204ENST00000439235 KRTAP19-7Q3SYF9 63 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms