RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 FLGP20930 4061 aaPredicted RBP6.05□□□□□ -1.44
LINC00339-204ENST00000434233 M0R2T5 61 aa6.02□□□□□ -1.45
LINC00339-204ENST00000434233 NDUFC1O43677 76 aa6.02□□□□□ -1.45
LINC00339-204ENST00000434233 SPANXA2-OT1Q8N9U9 137 aa6.01□□□□□ -1.45
LINC00339-204ENST00000434233 DMAC1Q96GE9 116 aa6□□□□□ -1.45
LINC00339-204ENST00000434233 CCDC179H3BU77 68 aa5.99□□□□□ -1.45
LINC00339-204ENST00000434233 S4R3F8 94 aa5.98□□□□□ -1.45
LINC00339-204ENST00000434233 H7BZZ5 65 aa5.96□□□□□ -1.46
LINC00339-204ENST00000434233 ACYP2P14621 99 aa5.96□□□□□ -1.46
LINC00339-204ENST00000434233 CYSTM1Q9H1C7 97 aa5.96□□□□□ -1.46
LINC00339-204ENST00000434233 LCA10Q71F78 164 aa5.95□□□□□ -1.46
LINC00339-204ENST00000434233 KRTAP10-6P60371 365 aaPredicted RBP5.94□□□□□ -1.46
LINC00339-204ENST00000434233 CSAG1Q6PB30 78 aa5.91□□□□□ -1.46
LINC00339-204ENST00000434233 KRTAP9-8Q9BYQ0 159 aa5.85□□□□□ -1.47
LINC00339-204ENST00000434233 CHKB-CPT1BH3BT56 60 aa5.82□□□□□ -1.48
LINC00339-204ENST00000434233 ATP5EP56381 51 aaPredicted RBP5.82□□□□□ -1.48
LINC00339-204ENST00000434233 TMEM258P61165 79 aa5.8□□□□□ -1.48
LINC00339-204ENST00000434233 SPTSSBQ8NFR3 76 aa5.8□□□□□ -1.48
LINC00339-204ENST00000434233 MT2AP02795 61 aa5.79□□□□□ -1.48
LINC00339-204ENST00000434233 COA5Q86WW8 74 aa5.79□□□□□ -1.48
LINC00339-204ENST00000434233 H0YAA0 97 aa5.76□□□□□ -1.49
LINC00339-204ENST00000434233 KRTAP10-10P60014 251 aa5.75□□□□□ -1.49
LINC00339-204ENST00000434233 MT1FP04733 61 aa5.74□□□□□ -1.49
LINC00339-204ENST00000434233 ADM2Q7Z4H4 148 aa5.68□□□□□ -1.5
LINC00339-204ENST00000434233 KRTAP9-3Q9BYQ3 159 aa5.66□□□□□ -1.5
LINC00339-204ENST00000434233 CRIPTQ9P021 101 aa5.63□□□□□ -1.51
LINC00339-204ENST00000434233 SERP1Q9Y6X1 66 aa5.63□□□□□ -1.51
LINC00339-204ENST00000434233 P0C880 135 aa5.6□□□□□ -1.51
LINC00339-204ENST00000434233 SEC61GP60059 68 aa5.57□□□□□ -1.52
LINC00339-204ENST00000434233 KRTAP9-2Q9BYQ4 174 aa5.57□□□□□ -1.52
LINC00339-204ENST00000434233 KRTAP19-4Q3LI73 84 aa5.55□□□□□ -1.52
LINC00339-204ENST00000434233 KRTAP19-1Q8IUB9 90 aa5.55□□□□□ -1.52
LINC00339-204ENST00000434233 SPRR2GQ9BYE4 73 aa5.55□□□□□ -1.52
LINC00339-204ENST00000434233 RPS28P62857 69 aaKnown RBP5.52□□□□□ -1.53
LINC00339-204ENST00000434233 LINC01558Q9Y6Z2 57 aa5.51□□□□□ -1.53
LINC00339-204ENST00000434233 R4GN34 69 aa5.51□□□□□ -1.53
LINC00339-204ENST00000434233 A0A1B0GU69 56 aa5.49□□□□□ -1.53
LINC00339-204ENST00000434233 M0QZ58 72 aa5.47□□□□□ -1.53
LINC00339-204ENST00000434233 KRTAP19-8Q3LI54 63 aa5.46□□□□□ -1.54
LINC00339-204ENST00000434233 PRR15LQ9BU68 103 aa5.45□□□□□ -1.54
LINC00339-204ENST00000434233 SMIM26A0A096LP01 95 aa5.44□□□□□ -1.54
LINC00339-204ENST00000434233 A0A1B0GU33 70 aa5.44□□□□□ -1.54
LINC00339-204ENST00000434233 V9GYY9 64 aa5.44□□□□□ -1.54
LINC00339-204ENST00000434233 Q1T7F1 81 aa5.42□□□□□ -1.54
LINC00339-204ENST00000434233 Q5VV11 94 aa5.41□□□□□ -1.54
LINC00339-204ENST00000434233 MT1BP07438 61 aa5.39□□□□□ -1.55
LINC00339-204ENST00000434233 KRTAP13-4Q3LI77 160 aa5.38□□□□□ -1.55
LINC00339-204ENST00000434233 USH2AO75445 5202 aa5.38□□□□□ -1.55
LINC00339-204ENST00000434233 LINC01554Q52M75 96 aa5.35□□□□□ -1.55
LINC00339-204ENST00000434233 CRCT1Q9UGL9 99 aa5.34□□□□□ -1.55
LINC00339-204ENST00000434233 SPATA8Q6RVD6 105 aa5.33□□□□□ -1.56
LINC00339-204ENST00000434233 PLAC4Q8WY50 150 aa5.32□□□□□ -1.56
LINC00339-204ENST00000434233 A6NN06 94 aa5.31□□□□□ -1.56
LINC00339-204ENST00000434233 UQCR11O14957 56 aa5.29□□□□□ -1.56
LINC00339-204ENST00000434233 PSPHP1O15172 72 aa5.29□□□□□ -1.56
LINC00339-204ENST00000434233 KRTAP19-6Q3LI70 58 aa5.29□□□□□ -1.56
LINC00339-204ENST00000434233 KRTAP9-6A0A140TA67 174 aa5.26□□□□□ -1.57
LINC00339-204ENST00000434233 A0A0D9SG42 100 aa5.25□□□□□ -1.57
LINC00339-204ENST00000434233 FSIP2Q5CZC0 6907 aa5.24□□□□□ -1.57
LINC00339-204ENST00000434233 SSPOA2VEC9 5147 aa5.24□□□□□ -1.57
LINC00339-204ENST00000434233 A8MU10 97 aa5.2□□□□□ -1.58
LINC00339-204ENST00000434233 KRTAP10-5P60370 271 aa5.19□□□□□ -1.58
LINC00339-204ENST00000434233 MIR22HGQ0VDD5 57 aa5.19□□□□□ -1.58
LINC00339-204ENST00000434233 KRTAP12-1P59990 96 aa5.18□□□□□ -1.58
LINC00339-204ENST00000434233 SPINT4Q6UDR6 99 aa5.17□□□□□ -1.58
LINC00339-204ENST00000434233 KRTAP15-1Q3LI76 137 aa5.15□□□□□ -1.59
LINC00339-204ENST00000434233 PRO2289Q9P1D8 64 aa5.15□□□□□ -1.59
LINC00339-204ENST00000434233 A6NED7 52 aa5.14□□□□□ -1.59
LINC00339-204ENST00000434233 MT1XP80297 61 aa5.14□□□□□ -1.59
LINC00339-204ENST00000434233 KRTAP12-2P59991 146 aa5.13□□□□□ -1.59
LINC00339-204ENST00000434233 PRAC1Q96KF2 57 aa5.12□□□□□ -1.59
LINC00339-204ENST00000434233 CAMK2N1Q7Z7J9 78 aa5.11□□□□□ -1.59
LINC00339-204ENST00000434233 FCGBPQ9Y6R7 5405 aaPredicted RBP5.07□□□□□ -1.6
LINC00339-204ENST00000434233 K7ERS5 55 aa5.03□□□□□ -1.6
LINC00339-204ENST00000434233 CDC42SE1Q9NRR8 79 aa5.03□□□□□ -1.6
LINC00339-204ENST00000434233 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.94□□□□□ -1.62
LINC00339-204ENST00000434233 KRTAP9-7A8MTY7 169 aa4.92□□□□□ -1.62
LINC00339-204ENST00000434233 C10orf95Q9H7T3 257 aa4.92□□□□□ -1.62
LINC00339-204ENST00000434233 KRTAP10-7P60409 375 aaPredicted RBP4.91□□□□□ -1.62
LINC00339-204ENST00000434233 KRTAP10-12P60413 245 aa4.9□□□□□ -1.63
LINC00339-204ENST00000434233 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
LINC00339-204ENST00000434233 LCE4AQ5TA78 99 aa4.85□□□□□ -1.63
LINC00339-204ENST00000434233 BRK1Q8WUW1 75 aa4.85□□□□□ -1.63
LINC00339-204ENST00000434233 TNP1P09430 55 aa4.84□□□□□ -1.63
LINC00339-204ENST00000434233 KRTAP9-9Q9BYP9 154 aa4.82□□□□□ -1.64
LINC00339-204ENST00000434233 KRTAP4-8A0A0G2JLE6 195 aa4.79□□□□□ -1.64
LINC00339-204ENST00000434233 KRTAP4-8Q9BYQ9 185 aa4.79□□□□□ -1.64
LINC00339-204ENST00000434233 MACF1Q9UPN3 7388 aaKnown RBP4.79□□□□□ -1.64
LINC00339-204ENST00000434233 KRTAP6-3Q3LI67 103 aa4.78□□□□□ -1.64
LINC00339-204ENST00000434233 ROMO1P60602 79 aa4.76□□□□□ -1.65
LINC00339-204ENST00000434233 KRTAP25-1Q3LHN0 102 aa4.76□□□□□ -1.65
LINC00339-204ENST00000434233 KRTAP8-1Q8IUC2 63 aa4.76□□□□□ -1.65
LINC00339-204ENST00000434233 KRTAP4-12Q9BQ66 201 aa4.75□□□□□ -1.65
LINC00339-204ENST00000434233 KMT2DO14686 5537 aa4.73□□□□□ -1.65
LINC00339-204ENST00000434233 KRTAP5-9P26371 169 aa4.71□□□□□ -1.66
LINC00339-204ENST00000434233 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
LINC00339-204ENST00000434233 KRTAP4-6Q9BYQ5 205 aa4.7□□□□□ -1.66
LINC00339-204ENST00000434233 LCE5AQ5TCM9 118 aa4.69□□□□□ -1.66
LINC00339-204ENST00000434233 SYNE2Q8WXH0 6885 aaKnown RBP4.68□□□□□ -1.66
LINC00339-204ENST00000434233 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms