RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 KLKP1Q107X0 134 aa8.11□□□□□ -1.11
UBE3D-204ENST00000430071 KRTAP19-1Q8IUB9 90 aa8.11□□□□□ -1.11
UBE3D-204ENST00000430071 H3BPC8 53 aa8.1□□□□□ -1.11
UBE3D-204ENST00000430071 SMIM20Q8N5G0 67 aa8.1□□□□□ -1.11
UBE3D-204ENST00000430071 KRTAP9-7A8MTY7 169 aa8.02□□□□□ -1.13
UBE3D-204ENST00000430071 S4R3F8 94 aa8□□□□□ -1.13
UBE3D-204ENST00000430071 SERP2Q8N6R1 65 aa7.98□□□□□ -1.13
UBE3D-204ENST00000430071 LCA10Q71F78 164 aa7.97□□□□□ -1.13
UBE3D-204ENST00000430071 SNURFQ9Y675 71 aa7.94□□□□□ -1.14
UBE3D-204ENST00000430071 A8MUN3 132 aa7.93□□□□□ -1.14
UBE3D-204ENST00000430071 KRTAP3-3Q9BYR6 98 aa7.92□□□□□ -1.14
UBE3D-204ENST00000430071 C20orf197Q8N268 126 aa7.91□□□□□ -1.14
UBE3D-204ENST00000430071 KRTAP19-6Q3LI70 58 aa7.9□□□□□ -1.14
UBE3D-204ENST00000430071 CSAG1Q6PB30 78 aa7.87□□□□□ -1.15
UBE3D-204ENST00000430071 DMAC1Q96GE9 116 aa7.87□□□□□ -1.15
UBE3D-204ENST00000430071 COX7CP15954 63 aa7.84□□□□□ -1.15
UBE3D-204ENST00000430071 KRTAP3-2Q9BYR7 98 aa7.82□□□□□ -1.16
UBE3D-204ENST00000430071 NDUFC1O43677 76 aa7.79□□□□□ -1.16
UBE3D-204ENST00000430071 MACF1Q9UPN3 7388 aaKnown RBP7.77□□□□□ -1.17
UBE3D-204ENST00000430071 ANAPC13Q9BS18 74 aa7.76□□□□□ -1.17
UBE3D-204ENST00000430071 SPANXA2-OT1Q8N9U9 137 aa7.74□□□□□ -1.17
UBE3D-204ENST00000430071 ACYP2P14621 99 aa7.72□□□□□ -1.17
UBE3D-204ENST00000430071 CYSTM1Q9H1C7 97 aa7.72□□□□□ -1.17
UBE3D-204ENST00000430071 SYNE2Q8WXH0 6885 aaKnown RBP7.71□□□□□ -1.18
UBE3D-204ENST00000430071 H7BZZ5 65 aa7.66□□□□□ -1.18
UBE3D-204ENST00000430071 H0YAA0 97 aa7.64□□□□□ -1.19
UBE3D-204ENST00000430071 MT1BP07438 61 aa7.64□□□□□ -1.19
UBE3D-204ENST00000430071 CCDC179H3BU77 68 aa7.63□□□□□ -1.19
UBE3D-204ENST00000430071 ADM2Q7Z4H4 148 aa7.59□□□□□ -1.2
UBE3D-204ENST00000430071 CHKB-CPT1BH3BT56 60 aa7.58□□□□□ -1.2
UBE3D-204ENST00000430071 SPRR2GQ9BYE4 73 aa7.58□□□□□ -1.2
UBE3D-204ENST00000430071 KRTAP19-8Q3LI54 63 aa7.57□□□□□ -1.2
UBE3D-204ENST00000430071 KRTAP6-3Q3LI67 103 aa7.54□□□□□ -1.2
UBE3D-204ENST00000430071 SPTSSBQ8NFR3 76 aa7.53□□□□□ -1.2
UBE3D-204ENST00000430071 Q5VV11 94 aa7.52□□□□□ -1.21
UBE3D-204ENST00000430071 COA5Q86WW8 74 aa7.52□□□□□ -1.21
UBE3D-204ENST00000430071 P0C880 135 aa7.49□□□□□ -1.21
UBE3D-204ENST00000430071 CRIPTQ9P021 101 aa7.49□□□□□ -1.21
UBE3D-204ENST00000430071 A6NN06 94 aa7.48□□□□□ -1.21
UBE3D-204ENST00000430071 KRTAP10-5P60370 271 aa7.43□□□□□ -1.22
UBE3D-204ENST00000430071 ATP5EP56381 51 aaPredicted RBP7.35□□□□□ -1.23
UBE3D-204ENST00000430071 R4GN34 69 aa7.33□□□□□ -1.24
UBE3D-204ENST00000430071 TMEM258P61165 79 aa7.33□□□□□ -1.24
UBE3D-204ENST00000430071 M0QZ58 72 aa7.31□□□□□ -1.24
UBE3D-204ENST00000430071 MUC12Q9UKN1 5478 aa7.27□□□□□ -1.25
UBE3D-204ENST00000430071 NEBP20929 6669 aa7.24□□□□□ -1.25
UBE3D-204ENST00000430071 SEC61GP60059 68 aa7.2□□□□□ -1.26
UBE3D-204ENST00000430071 LINC01554Q52M75 96 aa7.2□□□□□ -1.26
UBE3D-204ENST00000430071 SERP1Q9Y6X1 66 aa7.18□□□□□ -1.26
UBE3D-204ENST00000430071 KRTAP5-9P26371 169 aa7.17□□□□□ -1.26
UBE3D-204ENST00000430071 KRTAP13-4Q3LI77 160 aa7.17□□□□□ -1.26
UBE3D-204ENST00000430071 PCP4P48539 62 aa7.15□□□□□ -1.26
UBE3D-204ENST00000430071 MT1XP80297 61 aa7.13□□□□□ -1.27
UBE3D-204ENST00000430071 KMT2DO14686 5537 aa7.13□□□□□ -1.27
UBE3D-204ENST00000430071 A0A1B0GU69 56 aa7.1□□□□□ -1.27
UBE3D-204ENST00000430071 PLAC4Q8WY50 150 aa7.1□□□□□ -1.27
UBE3D-204ENST00000430071 A0A1B0GU33 70 aa7.08□□□□□ -1.28
UBE3D-204ENST00000430071 MDN1Q9NU22 5596 aa7.05□□□□□ -1.28
UBE3D-204ENST00000430071 LINC01558Q9Y6Z2 57 aa7.04□□□□□ -1.28
UBE3D-204ENST00000430071 SPATA8Q6RVD6 105 aa7.03□□□□□ -1.28
UBE3D-204ENST00000430071 KRTAP20-1Q3LI63 56 aa7.01□□□□□ -1.29
UBE3D-204ENST00000430071 PRO2289Q9P1D8 64 aa6.99□□□□□ -1.29
UBE3D-204ENST00000430071 SPRR2FQ96RM1 72 aa6.96□□□□□ -1.29
UBE3D-204ENST00000430071 PRR15LQ9BU68 103 aa6.96□□□□□ -1.29
UBE3D-204ENST00000430071 A0A0D9SG42 100 aa6.95□□□□□ -1.3
UBE3D-204ENST00000430071 KRTAP4-8A0A0G2JLE6 195 aa6.9□□□□□ -1.31
UBE3D-204ENST00000430071 KRTAP4-8Q9BYQ9 185 aa6.9□□□□□ -1.31
UBE3D-204ENST00000430071 KRTAP12-2P59991 146 aa6.89□□□□□ -1.31
UBE3D-204ENST00000430071 KRTAP8-1Q8IUC2 63 aa6.88□□□□□ -1.31
UBE3D-204ENST00000430071 SPRR2EP22531 72 aa6.87□□□□□ -1.31
UBE3D-204ENST00000430071 SPRR2BP35325 72 aa6.87□□□□□ -1.31
UBE3D-204ENST00000430071 SPRR2AP35326 72 aa6.87□□□□□ -1.31
UBE3D-204ENST00000430071 A8MU10 97 aa6.85□□□□□ -1.31
UBE3D-204ENST00000430071 SMIM26A0A096LP01 95 aa6.84□□□□□ -1.31
UBE3D-204ENST00000430071 KRTAP12-1P59990 96 aa6.84□□□□□ -1.31
UBE3D-204ENST00000430071 Q1T7F1 81 aa6.83□□□□□ -1.32
UBE3D-204ENST00000430071 KRTAP10-7P60409 375 aaPredicted RBP6.82□□□□□ -1.32
UBE3D-204ENST00000430071 RPS28P62857 69 aaKnown RBP6.82□□□□□ -1.32
UBE3D-204ENST00000430071 V9GYY9 64 aa6.82□□□□□ -1.32
UBE3D-204ENST00000430071 SPINT4Q6UDR6 99 aa6.81□□□□□ -1.32
UBE3D-204ENST00000430071 KRTAP2-3P0C7H8 128 aa6.8□□□□□ -1.32
UBE3D-204ENST00000430071 LCE1AQ5T7P2 110 aa6.8□□□□□ -1.32
UBE3D-204ENST00000430071 CAMK2N1Q7Z7J9 78 aa6.8□□□□□ -1.32
UBE3D-204ENST00000430071 KRTAP2-4Q9BYR9 128 aa6.8□□□□□ -1.32
UBE3D-204ENST00000430071 PSPHP1O15172 72 aa6.78□□□□□ -1.32
UBE3D-204ENST00000430071 UQCR11O14957 56 aa6.77□□□□□ -1.33
UBE3D-204ENST00000430071 KRTAP10-12P60413 245 aa6.73□□□□□ -1.33
UBE3D-204ENST00000430071 MIR22HGQ0VDD5 57 aa6.67□□□□□ -1.34
UBE3D-204ENST00000430071 SPRR2DP22532 72 aa6.63□□□□□ -1.35
UBE3D-204ENST00000430071 KRTAP2-2Q9BYT5 123 aa6.57□□□□□ -1.36
UBE3D-204ENST00000430071 KRTAP2-1Q9BYU5 128 aa6.57□□□□□ -1.36
UBE3D-204ENST00000430071 A6NED7 52 aa6.55□□□□□ -1.36
UBE3D-204ENST00000430071 C10orf95Q9H7T3 257 aa6.51□□□□□ -1.37
UBE3D-204ENST00000430071 LCE3BQ5TA77 95 aa6.46□□□□□ -1.37
UBE3D-204ENST00000430071 K7ERS5 55 aa6.42□□□□□ -1.38
UBE3D-204ENST00000430071 KRTAP19-7Q3SYF9 63 aa6.38□□□□□ -1.39
UBE3D-204ENST00000430071 TNP1P09430 55 aa6.36□□□□□ -1.39
UBE3D-204ENST00000430071 CDC42SE1Q9NRR8 79 aa6.34□□□□□ -1.39
UBE3D-204ENST00000430071 LOC100996750A0A140TA64 210 aa6.33□□□□□ -1.4
UBE3D-204ENST00000430071 KRTAP4-6Q9BYQ5 205 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms