RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MPLKIPQ8TAP9 179 aa8.69□□□□□ -1.02
CCDC28B-202ENST00000421922 LORP23490 312 aaPredicted RBP8.64□□□□□ -1.03
CCDC28B-202ENST00000421922 CHKB-CPT1BH3BT56 60 aa8.62□□□□□ -1.03
CCDC28B-202ENST00000421922 H1FX-AS1Q4G0G2 97 aa8.62□□□□□ -1.03
CCDC28B-202ENST00000421922 KRTAP3-1Q9BYR8 98 aa8.62□□□□□ -1.03
CCDC28B-202ENST00000421922 COA5Q86WW8 74 aa8.58□□□□□ -1.04
CCDC28B-202ENST00000421922 SERP1Q9Y6X1 66 aa8.56□□□□□ -1.04
CCDC28B-202ENST00000421922 S4R3F8 94 aa8.54□□□□□ -1.04
CCDC28B-202ENST00000421922 SPTSSBQ8NFR3 76 aa8.5□□□□□ -1.05
CCDC28B-202ENST00000421922 KRTAP19-2Q3LHN2 52 aa8.46□□□□□ -1.06
CCDC28B-202ENST00000421922 LCA10Q71F78 164 aa8.45□□□□□ -1.06
CCDC28B-202ENST00000421922 RPS28P62857 69 aaKnown RBP8.4□□□□□ -1.06
CCDC28B-202ENST00000421922 CSAG1Q6PB30 78 aa8.37□□□□□ -1.07
CCDC28B-202ENST00000421922 CRCT1Q9UGL9 99 aa8.36□□□□□ -1.07
CCDC28B-202ENST00000421922 M0R2T5 61 aa8.32□□□□□ -1.08
CCDC28B-202ENST00000421922 SMIM26A0A096LP01 95 aa8.31□□□□□ -1.08
CCDC28B-202ENST00000421922 FLGP20930 4061 aaPredicted RBP8.28□□□□□ -1.08
CCDC28B-202ENST00000421922 FSIP2Q5CZC0 6907 aa8.28□□□□□ -1.08
CCDC28B-202ENST00000421922 MT1HP80294 61 aa8.27□□□□□ -1.09
CCDC28B-202ENST00000421922 V9GYY9 64 aa8.24□□□□□ -1.09
CCDC28B-202ENST00000421922 SEC61GP60059 68 aa8.23□□□□□ -1.09
CCDC28B-202ENST00000421922 PRR15LQ9BU68 103 aa8.18□□□□□ -1.1
CCDC28B-202ENST00000421922 A0A1B0GU69 56 aa8.17□□□□□ -1.1
CCDC28B-202ENST00000421922 LINC01558Q9Y6Z2 57 aa8.17□□□□□ -1.1
CCDC28B-202ENST00000421922 Q1T7F1 81 aa8.16□□□□□ -1.1
CCDC28B-202ENST00000421922 LOC100996750A0A140TA64 210 aa8.13□□□□□ -1.11
CCDC28B-202ENST00000421922 KRTAP4-6Q9BYQ5 205 aa8.13□□□□□ -1.11
CCDC28B-202ENST00000421922 ADM2Q7Z4H4 148 aa8.12□□□□□ -1.11
CCDC28B-202ENST00000421922 H0YAA0 97 aa8.11□□□□□ -1.11
CCDC28B-202ENST00000421922 PSPHP1O15172 72 aa8.05□□□□□ -1.12
CCDC28B-202ENST00000421922 KRTAP10-6P60371 365 aaPredicted RBP8.01□□□□□ -1.13
CCDC28B-202ENST00000421922 P0C880 135 aa7.98□□□□□ -1.13
CCDC28B-202ENST00000421922 A0A1B0GU33 70 aa7.95□□□□□ -1.14
CCDC28B-202ENST00000421922 Q5VV11 94 aa7.94□□□□□ -1.14
CCDC28B-202ENST00000421922 KRTAP10-10P60014 251 aa7.91□□□□□ -1.14
CCDC28B-202ENST00000421922 MT2AP02795 61 aa7.9□□□□□ -1.14
CCDC28B-202ENST00000421922 KRTAP9-8Q9BYQ0 159 aa7.89□□□□□ -1.15
CCDC28B-202ENST00000421922 UQCR11O14957 56 aa7.88□□□□□ -1.15
CCDC28B-202ENST00000421922 R4GN34 69 aa7.88□□□□□ -1.15
CCDC28B-202ENST00000421922 KRTAP9-7A8MTY7 169 aa7.87□□□□□ -1.15
CCDC28B-202ENST00000421922 CRIPTQ9P021 101 aa7.87□□□□□ -1.15
CCDC28B-202ENST00000421922 A6NED7 52 aa7.86□□□□□ -1.15
CCDC28B-202ENST00000421922 M0QZ58 72 aa7.85□□□□□ -1.15
CCDC28B-202ENST00000421922 MT1FP04733 61 aa7.84□□□□□ -1.15
CCDC28B-202ENST00000421922 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.82□□□□□ -1.16
CCDC28B-202ENST00000421922 SPATA8Q6RVD6 105 aa7.78□□□□□ -1.16
CCDC28B-202ENST00000421922 MIR22HGQ0VDD5 57 aa7.77□□□□□ -1.17
CCDC28B-202ENST00000421922 KRTAP13-4Q3LI77 160 aa7.74□□□□□ -1.17
CCDC28B-202ENST00000421922 LINC01554Q52M75 96 aa7.73□□□□□ -1.17
CCDC28B-202ENST00000421922 A0A0D9SG42 100 aa7.69□□□□□ -1.18
CCDC28B-202ENST00000421922 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
CCDC28B-202ENST00000421922 CDC42SE1Q9NRR8 79 aa7.65□□□□□ -1.18
CCDC28B-202ENST00000421922 A8MU10 97 aa7.63□□□□□ -1.19
CCDC28B-202ENST00000421922 BRK1Q8WUW1 75 aa7.63□□□□□ -1.19
CCDC28B-202ENST00000421922 KRTAP9-3Q9BYQ3 159 aa7.62□□□□□ -1.19
CCDC28B-202ENST00000421922 KRTAP19-1Q8IUB9 90 aa7.61□□□□□ -1.19
CCDC28B-202ENST00000421922 SSPOA2VEC9 5147 aa7.61□□□□□ -1.19
CCDC28B-202ENST00000421922 K7ERS5 55 aa7.55□□□□□ -1.2
CCDC28B-202ENST00000421922 USH2AO75445 5202 aa7.55□□□□□ -1.2
CCDC28B-202ENST00000421922 SPINT4Q6UDR6 99 aa7.54□□□□□ -1.2
CCDC28B-202ENST00000421922 A6NN06 94 aa7.52□□□□□ -1.2
CCDC28B-202ENST00000421922 PLAC4Q8WY50 150 aa7.5□□□□□ -1.21
CCDC28B-202ENST00000421922 FCGBPQ9Y6R7 5405 aaPredicted RBP7.49□□□□□ -1.21
CCDC28B-202ENST00000421922 KRTAP19-8Q3LI54 63 aa7.48□□□□□ -1.21
CCDC28B-202ENST00000421922 KRTAP12-1P59990 96 aa7.46□□□□□ -1.21
CCDC28B-202ENST00000421922 KRTAP4-8Q9BYQ9 185 aa7.46□□□□□ -1.21
CCDC28B-202ENST00000421922 KRTAP12-2P59991 146 aa7.44□□□□□ -1.22
CCDC28B-202ENST00000421922 CAMK2N1Q7Z7J9 78 aa7.39□□□□□ -1.23
CCDC28B-202ENST00000421922 MT1BP07438 61 aa7.36□□□□□ -1.23
CCDC28B-202ENST00000421922 PRO0628Q9UI54 55 aa7.34□□□□□ -1.23
CCDC28B-202ENST00000421922 H3BS24 57 aa7.28□□□□□ -1.24
CCDC28B-202ENST00000421922 MACF1Q9UPN3 7388 aaKnown RBP7.28□□□□□ -1.24
CCDC28B-202ENST00000421922 SYNE2Q8WXH0 6885 aaKnown RBP7.27□□□□□ -1.25
CCDC28B-202ENST00000421922 PMAIP1Q13794 54 aa7.2□□□□□ -1.26
CCDC28B-202ENST00000421922 PRO2289Q9P1D8 64 aa7.19□□□□□ -1.26
CCDC28B-202ENST00000421922 KRTAP4-12Q9BQ66 201 aa7.13□□□□□ -1.27
CCDC28B-202ENST00000421922 KRTAP19-6Q3LI70 58 aa7.12□□□□□ -1.27
CCDC28B-202ENST00000421922 ROMO1P60602 79 aa7.11□□□□□ -1.27
CCDC28B-202ENST00000421922 KRTAP6-3Q3LI67 103 aa7.11□□□□□ -1.27
CCDC28B-202ENST00000421922 LCE3BQ5TA77 95 aa7.1□□□□□ -1.27
CCDC28B-202ENST00000421922 MT1XP80297 61 aa7.1□□□□□ -1.27
CCDC28B-202ENST00000421922 KRTAP10-5P60370 271 aa7.08□□□□□ -1.28
CCDC28B-202ENST00000421922 C10orf95Q9H7T3 257 aa7.05□□□□□ -1.28
CCDC28B-202ENST00000421922 TNP1P09430 55 aa6.98□□□□□ -1.29
CCDC28B-202ENST00000421922 KRTAP9-9Q9BYP9 154 aa6.98□□□□□ -1.29
CCDC28B-202ENST00000421922 KRTAP9-4Q9BYQ2 154 aa6.98□□□□□ -1.29
CCDC28B-202ENST00000421922 KRTAP25-1Q3LHN0 102 aa6.93□□□□□ -1.3
CCDC28B-202ENST00000421922 NEBP20929 6669 aa6.89□□□□□ -1.31
CCDC28B-202ENST00000421922 SVIPQ8NHG7 77 aa6.88□□□□□ -1.31
CCDC28B-202ENST00000421922 KRTAP4-8A0A0G2JLE6 195 aa6.85□□□□□ -1.31
CCDC28B-202ENST00000421922 KTN1-AS1Q86SY8 53 aa6.84□□□□□ -1.31
CCDC28B-202ENST00000421922 KRTAP20-1Q3LI63 56 aa6.84□□□□□ -1.32
CCDC28B-202ENST00000421922 KRTAP10-7P60409 375 aaPredicted RBP6.81□□□□□ -1.32
CCDC28B-202ENST00000421922 MUC12Q9UKN1 5478 aa6.8□□□□□ -1.32
CCDC28B-202ENST00000421922 KRTAP10-12P60413 245 aa6.78□□□□□ -1.32
CCDC28B-202ENST00000421922 KRTAP19-4Q3LI73 84 aa6.73□□□□□ -1.33
CCDC28B-202ENST00000421922 PRAC1Q96KF2 57 aa6.72□□□□□ -1.33
CCDC28B-202ENST00000421922 PP632Q6XCG6 107 aa6.68□□□□□ -1.34
CCDC28B-202ENST00000421922 KRTAP23-1A1A580 65 aa6.66□□□□□ -1.34
CCDC28B-202ENST00000421922 LCE3AQ5TA76 89 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms