RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 C20orf197Q8N268 126 aa7.48□□□□□ -1.21
SKA1-202ENST00000398452 A0A0U1RQV1 116 aa7.47□□□□□ -1.21
SKA1-202ENST00000398452 SPINK7P58062 85 aa7.47□□□□□ -1.21
SKA1-202ENST00000398452 MUC2Q02817 5179 aa7.46□□□□□ -1.22
SKA1-202ENST00000398452 V9GYY9 64 aa7.44□□□□□ -1.22
SKA1-202ENST00000398452 CYP4F30PQ9H0H9 118 aa7.43□□□□□ -1.22
SKA1-202ENST00000398452 SNURFQ9Y675 71 aa7.43□□□□□ -1.22
SKA1-202ENST00000398452 KLKP1Q107X0 134 aa7.39□□□□□ -1.23
SKA1-202ENST00000398452 NDUFC1O43677 76 aa7.38□□□□□ -1.23
SKA1-202ENST00000398452 MUC17Q685J3 4493 aa7.38□□□□□ -1.23
SKA1-202ENST00000398452 CCDC179H3BU77 68 aa7.37□□□□□ -1.23
SKA1-202ENST00000398452 RPS28P62857 69 aaKnown RBP7.36□□□□□ -1.23
SKA1-202ENST00000398452 KRTAP9-8Q9BYQ0 159 aa7.36□□□□□ -1.23
SKA1-202ENST00000398452 RBM12B-AS1Q9P1G2 102 aa7.36□□□□□ -1.23
SKA1-202ENST00000398452 FAM236DA0A1B0GTK5 79 aa7.32□□□□□ -1.24
SKA1-202ENST00000398452 FAM236CP0DP71 79 aa7.32□□□□□ -1.24
SKA1-202ENST00000398452 HRES1P13985 223 aa7.31□□□□□ -1.24
SKA1-202ENST00000398452 FAT4Q6V0I7 4981 aa7.31□□□□□ -1.24
SKA1-202ENST00000398452 PRO0628Q9UI54 55 aa7.3□□□□□ -1.24
SKA1-202ENST00000398452 C4orf26Q17RF5 130 aa7.29□□□□□ -1.24
SKA1-202ENST00000398452 KRTAP4-1Q9BYQ7 146 aa7.28□□□□□ -1.24
SKA1-202ENST00000398452 COX6B2Q6YFQ2 88 aa7.27□□□□□ -1.25
SKA1-202ENST00000398452 SPANXA2-OT1Q8N9U9 137 aa7.25□□□□□ -1.25
SKA1-202ENST00000398452 H7BZZ5 65 aa7.23□□□□□ -1.25
SKA1-202ENST00000398452 A8MUN3 132 aa7.22□□□□□ -1.25
SKA1-202ENST00000398452 CYSTM1Q9H1C7 97 aa7.21□□□□□ -1.26
SKA1-202ENST00000398452 ATP5EP56381 51 aaPredicted RBP7.19□□□□□ -1.26
SKA1-202ENST00000398452 TMEM258P61165 79 aa7.19□□□□□ -1.26
SKA1-202ENST00000398452 MPLKIPQ8TAP9 179 aa7.19□□□□□ -1.26
SKA1-202ENST00000398452 ACYP2P14621 99 aa7.17□□□□□ -1.26
SKA1-202ENST00000398452 DMAC1Q96GE9 116 aa7.16□□□□□ -1.26
SKA1-202ENST00000398452 H1FX-AS1Q4G0G2 97 aa7.15□□□□□ -1.26
SKA1-202ENST00000398452 CHKB-CPT1BH3BT56 60 aa7.11□□□□□ -1.27
SKA1-202ENST00000398452 S4R3F8 94 aa7.07□□□□□ -1.28
SKA1-202ENST00000398452 SPTSSBQ8NFR3 76 aa7.04□□□□□ -1.28
SKA1-202ENST00000398452 COA5Q86WW8 74 aa7.02□□□□□ -1.29
SKA1-202ENST00000398452 M0R2T5 61 aa7□□□□□ -1.29
SKA1-202ENST00000398452 KRTAP19-2Q3LHN2 52 aa7□□□□□ -1.29
SKA1-202ENST00000398452 KRTAP23-1A1A580 65 aa6.98□□□□□ -1.29
SKA1-202ENST00000398452 KRTAP15-1Q3LI76 137 aa6.97□□□□□ -1.29
SKA1-202ENST00000398452 CSAG1Q6PB30 78 aa6.97□□□□□ -1.29
SKA1-202ENST00000398452 LCA10Q71F78 164 aa6.97□□□□□ -1.29
SKA1-202ENST00000398452 MT1HP80294 61 aa6.96□□□□□ -1.3
SKA1-202ENST00000398452 SERP1Q9Y6X1 66 aa6.96□□□□□ -1.3
SKA1-202ENST00000398452 PMAIP1Q13794 54 aa6.94□□□□□ -1.3
SKA1-202ENST00000398452 FSIP2Q5CZC0 6907 aa6.91□□□□□ -1.3
SKA1-202ENST00000398452 CRCT1Q9UGL9 99 aa6.89□□□□□ -1.31
SKA1-202ENST00000398452 A0A0A0MQY5 61 aa6.88□□□□□ -1.31
SKA1-202ENST00000398452 FLGP20930 4061 aaPredicted RBP6.84□□□□□ -1.31
SKA1-202ENST00000398452 KRTAP10-6P60371 365 aaPredicted RBP6.84□□□□□ -1.31
SKA1-202ENST00000398452 SMIM26A0A096LP01 95 aa6.77□□□□□ -1.33
SKA1-202ENST00000398452 PRR15LQ9BU68 103 aa6.73□□□□□ -1.33
SKA1-202ENST00000398452 H0YAA0 97 aa6.72□□□□□ -1.33
SKA1-202ENST00000398452 A0A1B0GU69 56 aa6.71□□□□□ -1.34
SKA1-202ENST00000398452 ADM2Q7Z4H4 148 aa6.71□□□□□ -1.34
SKA1-202ENST00000398452 BRK1Q8WUW1 75 aa6.67□□□□□ -1.34
SKA1-202ENST00000398452 LINC01558Q9Y6Z2 57 aa6.67□□□□□ -1.34
SKA1-202ENST00000398452 Q1T7F1 81 aa6.63□□□□□ -1.35
SKA1-202ENST00000398452 KRTAP10-10P60014 251 aa6.62□□□□□ -1.35
SKA1-202ENST00000398452 MT2AP02795 61 aa6.58□□□□□ -1.36
SKA1-202ENST00000398452 KTN1-AS1Q86SY8 53 aa6.58□□□□□ -1.36
SKA1-202ENST00000398452 CRIPTQ9P021 101 aa6.58□□□□□ -1.36
SKA1-202ENST00000398452 P0C880 135 aa6.57□□□□□ -1.36
SKA1-202ENST00000398452 PSPHP1O15172 72 aa6.55□□□□□ -1.36
SKA1-202ENST00000398452 R4GN34 69 aa6.55□□□□□ -1.36
SKA1-202ENST00000398452 A0A1B0GU33 70 aa6.54□□□□□ -1.36
SKA1-202ENST00000398452 MT1FP04733 61 aa6.52□□□□□ -1.37
SKA1-202ENST00000398452 M0QZ58 72 aa6.5□□□□□ -1.37
SKA1-202ENST00000398452 UQCR11O14957 56 aa6.47□□□□□ -1.37
SKA1-202ENST00000398452 Q5VV11 94 aa6.43□□□□□ -1.38
SKA1-202ENST00000398452 A6NED7 52 aa6.41□□□□□ -1.38
SKA1-202ENST00000398452 USH2AO75445 5202 aa6.41□□□□□ -1.38
SKA1-202ENST00000398452 LINC01554Q52M75 96 aa6.4□□□□□ -1.38
SKA1-202ENST00000398452 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
SKA1-202ENST00000398452 SSPOA2VEC9 5147 aa6.38□□□□□ -1.39
SKA1-202ENST00000398452 MIR22HGQ0VDD5 57 aa6.36□□□□□ -1.39
SKA1-202ENST00000398452 SPRR2GQ9BYE4 73 aa6.36□□□□□ -1.39
SKA1-202ENST00000398452 A0A0D9SG42 100 aa6.33□□□□□ -1.4
SKA1-202ENST00000398452 KRTAP13-4Q3LI77 160 aa6.32□□□□□ -1.4
SKA1-202ENST00000398452 FCGBPQ9Y6R7 5405 aaPredicted RBP6.27□□□□□ -1.41
SKA1-202ENST00000398452 PLAC4Q8WY50 150 aa6.26□□□□□ -1.41
SKA1-202ENST00000398452 A8MU10 97 aa6.24□□□□□ -1.41
SKA1-202ENST00000398452 K7ERS5 55 aa6.24□□□□□ -1.41
SKA1-202ENST00000398452 A6NN06 94 aa6.23□□□□□ -1.41
SKA1-202ENST00000398452 SPINT4Q6UDR6 99 aa6.23□□□□□ -1.41
SKA1-202ENST00000398452 KRTAP19-8Q3LI54 63 aa6.22□□□□□ -1.41
SKA1-202ENST00000398452 CDC42SE1Q9NRR8 79 aa6.21□□□□□ -1.42
SKA1-202ENST00000398452 LCE1AQ5T7P2 110 aa6.19□□□□□ -1.42
SKA1-202ENST00000398452 CAMK2N1Q7Z7J9 78 aa6.14□□□□□ -1.43
SKA1-202ENST00000398452 SYNE2Q8WXH0 6885 aaKnown RBP6.12□□□□□ -1.43
SKA1-202ENST00000398452 KRTAP12-1P59990 96 aa6.12□□□□□ -1.43
SKA1-202ENST00000398452 KRTAP19-6Q3LI70 58 aa6.12□□□□□ -1.43
SKA1-202ENST00000398452 MT1BP07438 61 aa6.11□□□□□ -1.43
SKA1-202ENST00000398452 KRTAP12-2P59991 146 aa6.09□□□□□ -1.43
SKA1-202ENST00000398452 MACF1Q9UPN3 7388 aaKnown RBP6.09□□□□□ -1.43
SKA1-202ENST00000398452 PRO2289Q9P1D8 64 aa6.03□□□□□ -1.44
SKA1-202ENST00000398452 KRTAP6-3Q3LI67 103 aa5.92□□□□□ -1.46
SKA1-202ENST00000398452 KRTAP10-5P60370 271 aa5.9□□□□□ -1.46
SKA1-202ENST00000398452 MT1XP80297 61 aa5.88□□□□□ -1.47
SKA1-202ENST00000398452 KRTAP10-7P60409 375 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms