RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 MT2AP02795 61 aa8□□□□□ -1.13
CXCL1-201ENST00000395761 A8MUN3 132 aa7.95□□□□□ -1.14
CXCL1-201ENST00000395761 NDUFC1O43677 76 aa7.94□□□□□ -1.14
CXCL1-201ENST00000395761 MT1FP04733 61 aa7.94□□□□□ -1.14
CXCL1-201ENST00000395761 CCDC179H3BU77 68 aa7.92□□□□□ -1.14
CXCL1-201ENST00000395761 SPANXA2-OT1Q8N9U9 137 aa7.92□□□□□ -1.14
CXCL1-201ENST00000395761 DMAC1Q96GE9 116 aa7.9□□□□□ -1.14
CXCL1-201ENST00000395761 KRTAP10-10P60014 251 aa7.89□□□□□ -1.15
CXCL1-201ENST00000395761 CYSTM1Q9H1C7 97 aa7.89□□□□□ -1.15
CXCL1-201ENST00000395761 H7BZZ5 65 aa7.88□□□□□ -1.15
CXCL1-201ENST00000395761 FSIP2Q5CZC0 6907 aa7.85□□□□□ -1.15
CXCL1-201ENST00000395761 KRTAP9-6A0A140TA67 174 aa7.84□□□□□ -1.15
CXCL1-201ENST00000395761 KRTAP9-3Q9BYQ3 159 aa7.83□□□□□ -1.16
CXCL1-201ENST00000395761 S4R3F8 94 aa7.83□□□□□ -1.16
CXCL1-201ENST00000395761 ACYP2P14621 99 aa7.82□□□□□ -1.16
CXCL1-201ENST00000395761 LCA10Q71F78 164 aa7.81□□□□□ -1.16
CXCL1-201ENST00000395761 KRTAP4-8Q9BYQ9 185 aa7.8□□□□□ -1.16
CXCL1-201ENST00000395761 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
CXCL1-201ENST00000395761 USH2AO75445 5202 aa7.75□□□□□ -1.17
CXCL1-201ENST00000395761 CSAG1Q6PB30 78 aa7.74□□□□□ -1.17
CXCL1-201ENST00000395761 PCP4P48539 62 aa7.72□□□□□ -1.17
CXCL1-201ENST00000395761 ATP5EP56381 51 aaPredicted RBP7.68□□□□□ -1.18
CXCL1-201ENST00000395761 TMEM258P61165 79 aa7.67□□□□□ -1.18
CXCL1-201ENST00000395761 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.66□□□□□ -1.18
CXCL1-201ENST00000395761 CHKB-CPT1BH3BT56 60 aa7.63□□□□□ -1.19
CXCL1-201ENST00000395761 COA5Q86WW8 74 aa7.62□□□□□ -1.19
CXCL1-201ENST00000395761 SSPOA2VEC9 5147 aa7.62□□□□□ -1.19
CXCL1-201ENST00000395761 SPTSSBQ8NFR3 76 aa7.61□□□□□ -1.19
CXCL1-201ENST00000395761 H0YAA0 97 aa7.56□□□□□ -1.2
CXCL1-201ENST00000395761 KRTAP19-1Q8IUB9 90 aa7.52□□□□□ -1.21
CXCL1-201ENST00000395761 LCE3BQ5TA77 95 aa7.47□□□□□ -1.21
CXCL1-201ENST00000395761 SPRR2GQ9BYE4 73 aa7.44□□□□□ -1.22
CXCL1-201ENST00000395761 SERP1Q9Y6X1 66 aa7.44□□□□□ -1.22
CXCL1-201ENST00000395761 ADM2Q7Z4H4 148 aa7.43□□□□□ -1.22
CXCL1-201ENST00000395761 KRTAP4-12Q9BQ66 201 aa7.4□□□□□ -1.22
CXCL1-201ENST00000395761 FCGBPQ9Y6R7 5405 aaPredicted RBP7.39□□□□□ -1.23
CXCL1-201ENST00000395761 KRTAP19-6Q3LI70 58 aa7.39□□□□□ -1.23
CXCL1-201ENST00000395761 CRIPTQ9P021 101 aa7.38□□□□□ -1.23
CXCL1-201ENST00000395761 KRTAP19-8Q3LI54 63 aa7.36□□□□□ -1.23
CXCL1-201ENST00000395761 MT1BP07438 61 aa7.35□□□□□ -1.23
CXCL1-201ENST00000395761 P0C880 135 aa7.34□□□□□ -1.23
CXCL1-201ENST00000395761 Q5VV11 94 aa7.33□□□□□ -1.24
CXCL1-201ENST00000395761 RPS28P62857 69 aaKnown RBP7.31□□□□□ -1.24
CXCL1-201ENST00000395761 SEC61GP60059 68 aa7.29□□□□□ -1.24
CXCL1-201ENST00000395761 KRTAP9-9Q9BYP9 154 aa7.27□□□□□ -1.25
CXCL1-201ENST00000395761 KRTAP9-4Q9BYQ2 154 aa7.27□□□□□ -1.25
CXCL1-201ENST00000395761 LINC01558Q9Y6Z2 57 aa7.26□□□□□ -1.25
CXCL1-201ENST00000395761 A0A1B0GU69 56 aa7.22□□□□□ -1.25
CXCL1-201ENST00000395761 SMIM26A0A096LP01 95 aa7.2□□□□□ -1.26
CXCL1-201ENST00000395761 R4GN34 69 aa7.2□□□□□ -1.26
CXCL1-201ENST00000395761 KRTAP4-8A0A0G2JLE6 195 aa7.19□□□□□ -1.26
CXCL1-201ENST00000395761 M0QZ58 72 aa7.17□□□□□ -1.26
CXCL1-201ENST00000395761 V9GYY9 64 aa7.17□□□□□ -1.26
CXCL1-201ENST00000395761 Q1T7F1 81 aa7.16□□□□□ -1.26
CXCL1-201ENST00000395761 PRR15LQ9BU68 103 aa7.16□□□□□ -1.26
CXCL1-201ENST00000395761 A0A1B0GU33 70 aa7.13□□□□□ -1.27
CXCL1-201ENST00000395761 A6NN06 94 aa7.13□□□□□ -1.27
CXCL1-201ENST00000395761 KRTAP10-5P60370 271 aa7.11□□□□□ -1.27
CXCL1-201ENST00000395761 KRTAP9-7A8MTY7 169 aa7.08□□□□□ -1.28
CXCL1-201ENST00000395761 KRTAP13-4Q3LI77 160 aa7.07□□□□□ -1.28
CXCL1-201ENST00000395761 LINC01554Q52M75 96 aa7.05□□□□□ -1.28
CXCL1-201ENST00000395761 MACF1Q9UPN3 7388 aaKnown RBP7.05□□□□□ -1.28
CXCL1-201ENST00000395761 PLAC4Q8WY50 150 aa7.03□□□□□ -1.28
CXCL1-201ENST00000395761 SPATA8Q6RVD6 105 aa7□□□□□ -1.29
CXCL1-201ENST00000395761 SYNE2Q8WXH0 6885 aaKnown RBP6.99□□□□□ -1.29
CXCL1-201ENST00000395761 PSPHP1O15172 72 aa6.98□□□□□ -1.29
CXCL1-201ENST00000395761 UQCR11O14957 56 aa6.96□□□□□ -1.3
CXCL1-201ENST00000395761 MT1XP80297 61 aa6.96□□□□□ -1.3
CXCL1-201ENST00000395761 LCE1DQ5T752 114 aa6.96□□□□□ -1.3
CXCL1-201ENST00000395761 KRTAP4-7Q9BYR0 210 aa6.96□□□□□ -1.3
CXCL1-201ENST00000395761 PRO2289Q9P1D8 64 aa6.89□□□□□ -1.31
CXCL1-201ENST00000395761 A0A0D9SG42 100 aa6.87□□□□□ -1.31
CXCL1-201ENST00000395761 KRTAP6-3Q3LI67 103 aa6.85□□□□□ -1.31
CXCL1-201ENST00000395761 A8MU10 97 aa6.84□□□□□ -1.31
CXCL1-201ENST00000395761 MIR22HGQ0VDD5 57 aa6.84□□□□□ -1.31
CXCL1-201ENST00000395761 H3BS24 57 aa6.82□□□□□ -1.32
CXCL1-201ENST00000395761 KRTAP12-1P59990 96 aa6.81□□□□□ -1.32
CXCL1-201ENST00000395761 A6NED7 52 aa6.78□□□□□ -1.32
CXCL1-201ENST00000395761 SPINT4Q6UDR6 99 aa6.76□□□□□ -1.33
CXCL1-201ENST00000395761 KRTAP4-9Q9BYQ8 210 aa6.76□□□□□ -1.33
CXCL1-201ENST00000395761 KRTAP12-2P59991 146 aa6.75□□□□□ -1.33
CXCL1-201ENST00000395761 CAMK2N1Q7Z7J9 78 aa6.68□□□□□ -1.34
CXCL1-201ENST00000395761 KMT2DO14686 5537 aa6.68□□□□□ -1.34
CXCL1-201ENST00000395761 LCE4AQ5TA78 99 aa6.67□□□□□ -1.34
CXCL1-201ENST00000395761 KRTAP10-7P60409 375 aaPredicted RBP6.66□□□□□ -1.34
CXCL1-201ENST00000395761 KRTAP4-2Q9BYR5 136 aa6.65□□□□□ -1.34
CXCL1-201ENST00000395761 CDC42SE1Q9NRR8 79 aa6.65□□□□□ -1.34
CXCL1-201ENST00000395761 KRTAP5-9P26371 169 aa6.64□□□□□ -1.35
CXCL1-201ENST00000395761 K7ERS5 55 aa6.6□□□□□ -1.35
CXCL1-201ENST00000395761 KRTAP10-12P60413 245 aa6.59□□□□□ -1.35
CXCL1-201ENST00000395761 MUC12Q9UKN1 5478 aa6.58□□□□□ -1.36
CXCL1-201ENST00000395761 KRTAP19-4Q3LI73 84 aa6.57□□□□□ -1.36
CXCL1-201ENST00000395761 KRTAP8-1Q8IUC2 63 aa6.57□□□□□ -1.36
CXCL1-201ENST00000395761 NEBP20929 6669 aa6.54□□□□□ -1.36
CXCL1-201ENST00000395761 SPRR2FQ96RM1 72 aa6.52□□□□□ -1.37
CXCL1-201ENST00000395761 KRTAP4-11Q9BYQ6 195 aa6.5□□□□□ -1.37
CXCL1-201ENST00000395761 C10orf95Q9H7T3 257 aa6.46□□□□□ -1.38
CXCL1-201ENST00000395761 MDN1Q9NU22 5596 aa6.46□□□□□ -1.38
CXCL1-201ENST00000395761 BRK1Q8WUW1 75 aa6.42□□□□□ -1.38
CXCL1-201ENST00000395761 SPRR2EP22531 72 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms