RNA–Protein interactions for RNA: ENST00000394440.7

CCT4-201, Transcript of chaperonin containing TCP1 subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCT4, Length 2,520 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT4-201ENST00000394440 Q1T7F1 81 aa7.82□□□□□ -1.16
CCT4-201ENST00000394440 UBR4Q5T4S7 5183 aa7.82□□□□□ -1.16
CCT4-201ENST00000394440 LPAP08519 4548 aa7.8□□□□□ -1.16
CCT4-201ENST00000394440 SPTSSBQ8NFR3 76 aa7.79□□□□□ -1.16
CCT4-201ENST00000394440 KRTAP3-1Q9BYR8 98 aa7.78□□□□□ -1.16
CCT4-201ENST00000394440 LCA10Q71F78 164 aa7.76□□□□□ -1.17
CCT4-201ENST00000394440 CHKB-CPT1BH3BT56 60 aa7.73□□□□□ -1.17
CCT4-201ENST00000394440 COX6B2Q6YFQ2 88 aa7.73□□□□□ -1.17
CCT4-201ENST00000394440 A6NN06 94 aa7.72□□□□□ -1.17
CCT4-201ENST00000394440 LINC01558Q9Y6Z2 57 aa7.68□□□□□ -1.18
CCT4-201ENST00000394440 LINC01554Q52M75 96 aa7.64□□□□□ -1.19
CCT4-201ENST00000394440 PRAC1Q96KF2 57 aa7.62□□□□□ -1.19
CCT4-201ENST00000394440 Q5VV11 94 aa7.61□□□□□ -1.19
CCT4-201ENST00000394440 PRR15LQ9BU68 103 aa7.61□□□□□ -1.19
CCT4-201ENST00000394440 SEC61BP60468 96 aaKnown RBP7.6□□□□□ -1.19
CCT4-201ENST00000394440 RNF213Q63HN8 5207 aa7.56□□□□□ -1.2
CCT4-201ENST00000394440 MUC17Q685J3 4493 aa7.54□□□□□ -1.2
CCT4-201ENST00000394440 KRTAP4-1Q9BYQ7 146 aa7.51□□□□□ -1.21
CCT4-201ENST00000394440 ADM2Q7Z4H4 148 aa7.51□□□□□ -1.21
CCT4-201ENST00000394440 KRTAP3-3Q9BYR6 98 aa7.51□□□□□ -1.21
CCT4-201ENST00000394440 KRTAP3-2Q9BYR7 98 aa7.51□□□□□ -1.21
CCT4-201ENST00000394440 A0A1B0GU69 56 aa7.48□□□□□ -1.21
CCT4-201ENST00000394440 H1FX-AS1Q4G0G2 97 aa7.48□□□□□ -1.21
CCT4-201ENST00000394440 S4R3F8 94 aa7.46□□□□□ -1.22
CCT4-201ENST00000394440 A6NED7 52 aa7.44□□□□□ -1.22
CCT4-201ENST00000394440 KRTAP19-2Q3LHN2 52 aa7.37□□□□□ -1.23
CCT4-201ENST00000394440 CDC42SE1Q9NRR8 79 aa7.37□□□□□ -1.23
CCT4-201ENST00000394440 MUC2Q02817 5179 aa7.3□□□□□ -1.24
CCT4-201ENST00000394440 UQCR11O14957 56 aa7.29□□□□□ -1.24
CCT4-201ENST00000394440 KRTAP10-6P60371 365 aaPredicted RBP7.26□□□□□ -1.25
CCT4-201ENST00000394440 CSAG1Q6PB30 78 aa7.26□□□□□ -1.25
CCT4-201ENST00000394440 SPATA8Q6RVD6 105 aa7.25□□□□□ -1.25
CCT4-201ENST00000394440 A0A1B0GU33 70 aa7.22□□□□□ -1.25
CCT4-201ENST00000394440 MIR22HGQ0VDD5 57 aa7.22□□□□□ -1.25
CCT4-201ENST00000394440 H0YAA0 97 aa7.18□□□□□ -1.26
CCT4-201ENST00000394440 P0C880 135 aa7.17□□□□□ -1.26
CCT4-201ENST00000394440 FLGP20930 4061 aaPredicted RBP7.16□□□□□ -1.26
CCT4-201ENST00000394440 FAT4Q6V0I7 4981 aa7.12□□□□□ -1.27
CCT4-201ENST00000394440 ROMO1P60602 79 aa7.12□□□□□ -1.27
CCT4-201ENST00000394440 LCE2CQ5TA81 110 aa7.11□□□□□ -1.27
CCT4-201ENST00000394440 KRTAP13-4Q3LI77 160 aa7.08□□□□□ -1.28
CCT4-201ENST00000394440 LCE2AQ5TA79 106 aaPredicted RBP7.08□□□□□ -1.28
CCT4-201ENST00000394440 KRTAP9-2Q9BYQ4 174 aa7.01□□□□□ -1.29
CCT4-201ENST00000394440 M0QZ58 72 aa6.96□□□□□ -1.3
CCT4-201ENST00000394440 MT1HP80294 61 aa6.94□□□□□ -1.3
CCT4-201ENST00000394440 LORP23490 312 aaPredicted RBP6.92□□□□□ -1.3
CCT4-201ENST00000394440 A0A0D9SG42 100 aa6.9□□□□□ -1.3
CCT4-201ENST00000394440 R4GN34 69 aa6.87□□□□□ -1.31
CCT4-201ENST00000394440 NDUFAF8A1L188 74 aa6.82□□□□□ -1.32
CCT4-201ENST00000394440 K7ERS5 55 aa6.82□□□□□ -1.32
CCT4-201ENST00000394440 KRTAP9-6A0A140TA67 174 aa6.81□□□□□ -1.32
CCT4-201ENST00000394440 M0R2T5 61 aa6.81□□□□□ -1.32
CCT4-201ENST00000394440 KRTAP12-1P59990 96 aa6.81□□□□□ -1.32
CCT4-201ENST00000394440 KRTAP12-2P59991 146 aa6.79□□□□□ -1.32
CCT4-201ENST00000394440 CRIPTQ9P021 101 aa6.77□□□□□ -1.33
CCT4-201ENST00000394440 LUZP6Q538Z0 58 aa6.76□□□□□ -1.33
CCT4-201ENST00000394440 KRTAP25-1Q3LHN0 102 aa6.75□□□□□ -1.33
CCT4-201ENST00000394440 SPINT4Q6UDR6 99 aa6.72□□□□□ -1.33
CCT4-201ENST00000394440 KRTAP9-8Q9BYQ0 159 aa6.72□□□□□ -1.33
CCT4-201ENST00000394440 MT2AP02795 61 aa6.7□□□□□ -1.34
CCT4-201ENST00000394440 MT1FP04733 61 aa6.67□□□□□ -1.34
CCT4-201ENST00000394440 SPRR2GQ9BYE4 73 aa6.64□□□□□ -1.35
CCT4-201ENST00000394440 KRTAP19-1Q8IUB9 90 aa6.62□□□□□ -1.35
CCT4-201ENST00000394440 KRTAP10-10P60014 251 aa6.6□□□□□ -1.35
CCT4-201ENST00000394440 CRCT1Q9UGL9 99 aa6.6□□□□□ -1.35
CCT4-201ENST00000394440 FSIP2Q5CZC0 6907 aa6.6□□□□□ -1.35
CCT4-201ENST00000394440 KRTAP9-3Q9BYQ3 159 aa6.46□□□□□ -1.37
CCT4-201ENST00000394440 LCE2BO14633 110 aa6.45□□□□□ -1.38
CCT4-201ENST00000394440 KRTAP19-8Q3LI54 63 aa6.45□□□□□ -1.38
CCT4-201ENST00000394440 KRTAP15-1Q3LI76 137 aa6.44□□□□□ -1.38
CCT4-201ENST00000394440 C10orf95Q9H7T3 257 aa6.44□□□□□ -1.38
CCT4-201ENST00000394440 CAMK2N1Q7Z7J9 78 aa6.43□□□□□ -1.38
CCT4-201ENST00000394440 PLAC4Q8WY50 150 aa6.38□□□□□ -1.39
CCT4-201ENST00000394440 MT1BP07438 61 aa6.36□□□□□ -1.39
CCT4-201ENST00000394440 USH2AO75445 5202 aa6.22□□□□□ -1.41
CCT4-201ENST00000394440 SSPOA2VEC9 5147 aa6.2□□□□□ -1.42
CCT4-201ENST00000394440 MT1XP80297 61 aa6.18□□□□□ -1.42
CCT4-201ENST00000394440 KRTAP10-5P60370 271 aa6.18□□□□□ -1.42
CCT4-201ENST00000394440 TNP1P09430 55 aa6.17□□□□□ -1.42
CCT4-201ENST00000394440 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.16□□□□□ -1.42
CCT4-201ENST00000394440 KRTAP9-7A8MTY7 169 aa6.11□□□□□ -1.43
CCT4-201ENST00000394440 PP632Q6XCG6 107 aa6.06□□□□□ -1.44
CCT4-201ENST00000394440 FCGBPQ9Y6R7 5405 aaPredicted RBP6.06□□□□□ -1.44
CCT4-201ENST00000394440 KRTAP23-1A1A580 65 aa6.05□□□□□ -1.44
CCT4-201ENST00000394440 PRO2289Q9P1D8 64 aa6.03□□□□□ -1.44
CCT4-201ENST00000394440 KRTAP19-6Q3LI70 58 aa5.95□□□□□ -1.46
CCT4-201ENST00000394440 KRTAP10-7P60409 375 aaPredicted RBP5.94□□□□□ -1.46
CCT4-201ENST00000394440 MACF1Q9UPN3 7388 aaKnown RBP5.93□□□□□ -1.46
CCT4-201ENST00000394440 LCE3AQ5TA76 89 aa5.92□□□□□ -1.46
CCT4-201ENST00000394440 KRTAP10-12P60413 245 aa5.88□□□□□ -1.47
CCT4-201ENST00000394440 SYNE2Q8WXH0 6885 aaKnown RBP5.87□□□□□ -1.47
CCT4-201ENST00000394440 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
CCT4-201ENST00000394440 KRTAP6-3Q3LI67 103 aa5.72□□□□□ -1.49
CCT4-201ENST00000394440 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
CCT4-201ENST00000394440 KRTAP4-8Q9BYQ9 185 aa5.67□□□□□ -1.5
CCT4-201ENST00000394440 KRTAP12-3P60328 96 aa5.67□□□□□ -1.5
CCT4-201ENST00000394440 KMT2DO14686 5537 aa5.65□□□□□ -1.5
CCT4-201ENST00000394440 KRTAP19-5Q3LI72 72 aa5.59□□□□□ -1.51
CCT4-201ENST00000394440 KRTAP19-7Q3SYF9 63 aa5.52□□□□□ -1.53
CCT4-201ENST00000394440 NEBP20929 6669 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms