RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PRR15LQ9BU68 103 aa7.02□□□□□ -1.29
PTPRF-202ENST00000372405 SEC61BP60468 96 aaKnown RBP7.01□□□□□ -1.29
PTPRF-202ENST00000372405 LINC01558Q9Y6Z2 57 aa7□□□□□ -1.29
PTPRF-202ENST00000372405 KRTAP4-1Q9BYQ7 146 aa6.99□□□□□ -1.29
PTPRF-202ENST00000372405 A8MU10 97 aa6.91□□□□□ -1.3
PTPRF-202ENST00000372405 MUC2Q02817 5179 aa6.9□□□□□ -1.31
PTPRF-202ENST00000372405 KRTAP3-3Q9BYR6 98 aa6.89□□□□□ -1.31
PTPRF-202ENST00000372405 LCA10Q71F78 164 aa6.88□□□□□ -1.31
PTPRF-202ENST00000372405 RBM12B-AS1Q9P1G2 102 aa6.88□□□□□ -1.31
PTPRF-202ENST00000372405 A6NED7 52 aa6.88□□□□□ -1.31
PTPRF-202ENST00000372405 H1FX-AS1Q4G0G2 97 aa6.88□□□□□ -1.31
PTPRF-202ENST00000372405 SPTSSBQ8NFR3 76 aa6.84□□□□□ -1.31
PTPRF-202ENST00000372405 CDC42SE1Q9NRR8 79 aa6.84□□□□□ -1.31
PTPRF-202ENST00000372405 S4R3F8 94 aa6.84□□□□□ -1.32
PTPRF-202ENST00000372405 KRTAP19-2Q3LHN2 52 aa6.82□□□□□ -1.32
PTPRF-202ENST00000372405 A0A1B0GU69 56 aa6.8□□□□□ -1.32
PTPRF-202ENST00000372405 UBR4Q5T4S7 5183 aa6.79□□□□□ -1.32
PTPRF-202ENST00000372405 PMAIP1Q13794 54 aa6.75□□□□□ -1.33
PTPRF-202ENST00000372405 RNF213Q63HN8 5207 aa6.73□□□□□ -1.33
PTPRF-202ENST00000372405 A6NN06 94 aa6.7□□□□□ -1.34
PTPRF-202ENST00000372405 SEC61GP60059 68 aa6.69□□□□□ -1.34
PTPRF-202ENST00000372405 FLGP20930 4061 aaPredicted RBP6.67□□□□□ -1.34
PTPRF-202ENST00000372405 CSAG1Q6PB30 78 aa6.66□□□□□ -1.34
PTPRF-202ENST00000372405 KRTAP3-2Q9BYR7 98 aa6.66□□□□□ -1.34
PTPRF-202ENST00000372405 KRTAP10-6P60371 365 aaPredicted RBP6.66□□□□□ -1.34
PTPRF-202ENST00000372405 SPATA8Q6RVD6 105 aa6.64□□□□□ -1.35
PTPRF-202ENST00000372405 KTN1-AS1Q86SY8 53 aa6.62□□□□□ -1.35
PTPRF-202ENST00000372405 LCE2CQ5TA81 110 aa6.62□□□□□ -1.35
PTPRF-202ENST00000372405 UQCR11O14957 56 aa6.61□□□□□ -1.35
PTPRF-202ENST00000372405 FAT4Q6V0I7 4981 aa6.6□□□□□ -1.35
PTPRF-202ENST00000372405 P0C880 135 aa6.59□□□□□ -1.35
PTPRF-202ENST00000372405 A0A1B0GU33 70 aa6.58□□□□□ -1.36
PTPRF-202ENST00000372405 MIR22HGQ0VDD5 57 aa6.58□□□□□ -1.36
PTPRF-202ENST00000372405 ADM2Q7Z4H4 148 aa6.57□□□□□ -1.36
PTPRF-202ENST00000372405 H0YAA0 97 aa6.55□□□□□ -1.36
PTPRF-202ENST00000372405 KRTAP13-4Q3LI77 160 aa6.51□□□□□ -1.37
PTPRF-202ENST00000372405 MT1HP80294 61 aa6.45□□□□□ -1.38
PTPRF-202ENST00000372405 LORP23490 312 aaPredicted RBP6.41□□□□□ -1.38
PTPRF-202ENST00000372405 A0A0D9SG42 100 aa6.34□□□□□ -1.39
PTPRF-202ENST00000372405 M0QZ58 72 aa6.34□□□□□ -1.39
PTPRF-202ENST00000372405 M0R2T5 61 aa6.33□□□□□ -1.4
PTPRF-202ENST00000372405 PRAC1Q96KF2 57 aa6.32□□□□□ -1.4
PTPRF-202ENST00000372405 R4GN34 69 aa6.3□□□□□ -1.4
PTPRF-202ENST00000372405 KRTAP9-8Q9BYQ0 159 aa6.24□□□□□ -1.41
PTPRF-202ENST00000372405 KRTAP12-2P59991 146 aa6.23□□□□□ -1.41
PTPRF-202ENST00000372405 KRTAP12-1P59990 96 aa6.22□□□□□ -1.41
PTPRF-202ENST00000372405 MT2AP02795 61 aa6.22□□□□□ -1.41
PTPRF-202ENST00000372405 LINC01554Q52M75 96 aa6.22□□□□□ -1.41
PTPRF-202ENST00000372405 MT1FP04733 61 aa6.2□□□□□ -1.42
PTPRF-202ENST00000372405 CRIPTQ9P021 101 aa6.18□□□□□ -1.42
PTPRF-202ENST00000372405 K7ERS5 55 aa6.17□□□□□ -1.42
PTPRF-202ENST00000372405 SPINT4Q6UDR6 99 aa6.16□□□□□ -1.42
PTPRF-202ENST00000372405 LCE2AQ5TA79 106 aaPredicted RBP6.15□□□□□ -1.43
PTPRF-202ENST00000372405 KRTAP10-10P60014 251 aa6.13□□□□□ -1.43
PTPRF-202ENST00000372405 KRTAP19-1Q8IUB9 90 aa6.13□□□□□ -1.43
PTPRF-202ENST00000372405 SPRR2GQ9BYE4 73 aa6.11□□□□□ -1.43
PTPRF-202ENST00000372405 KRTAP25-1Q3LHN0 102 aa6.05□□□□□ -1.44
PTPRF-202ENST00000372405 ROMO1P60602 79 aa6.02□□□□□ -1.45
PTPRF-202ENST00000372405 KRTAP9-3Q9BYQ3 159 aa6□□□□□ -1.45
PTPRF-202ENST00000372405 KRTAP19-8Q3LI54 63 aa5.94□□□□□ -1.46
PTPRF-202ENST00000372405 CAMK2N1Q7Z7J9 78 aa5.9□□□□□ -1.46
PTPRF-202ENST00000372405 C10orf95Q9H7T3 257 aa5.9□□□□□ -1.46
PTPRF-202ENST00000372405 MT1BP07438 61 aa5.89□□□□□ -1.47
PTPRF-202ENST00000372405 PLAC4Q8WY50 150 aa5.86□□□□□ -1.47
PTPRF-202ENST00000372405 LCE2BO14633 110 aa5.84□□□□□ -1.47
PTPRF-202ENST00000372405 USH2AO75445 5202 aa5.73□□□□□ -1.49
PTPRF-202ENST00000372405 MT1XP80297 61 aa5.71□□□□□ -1.49
PTPRF-202ENST00000372405 KRTAP10-5P60370 271 aa5.71□□□□□ -1.5
PTPRF-202ENST00000372405 TNP1P09430 55 aa5.62□□□□□ -1.51
PTPRF-202ENST00000372405 SSPOA2VEC9 5147 aa5.54□□□□□ -1.52
PTPRF-202ENST00000372405 PRO2289Q9P1D8 64 aa5.53□□□□□ -1.52
PTPRF-202ENST00000372405 KRTAP10-7P60409 375 aaPredicted RBP5.5□□□□□ -1.53
PTPRF-202ENST00000372405 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
PTPRF-202ENST00000372405 LCE2DQ5TA82 110 aaPredicted RBP5.49□□□□□ -1.53
PTPRF-202ENST00000372405 PP632Q6XCG6 107 aa5.48□□□□□ -1.53
PTPRF-202ENST00000372405 FSIP2Q5CZC0 6907 aa5.47□□□□□ -1.53
PTPRF-202ENST00000372405 KRTAP23-1A1A580 65 aa5.47□□□□□ -1.53
PTPRF-202ENST00000372405 LCE3AQ5TA76 89 aa5.44□□□□□ -1.54
PTPRF-202ENST00000372405 KRTAP19-6Q3LI70 58 aa5.42□□□□□ -1.54
PTPRF-202ENST00000372405 KRTAP10-12P60413 245 aa5.4□□□□□ -1.54
PTPRF-202ENST00000372405 H3BS24 57 aa5.35□□□□□ -1.55
PTPRF-202ENST00000372405 KMT2DO14686 5537 aa5.35□□□□□ -1.55
PTPRF-202ENST00000372405 KRTAP8-1Q8IUC2 63 aa5.31□□□□□ -1.56
PTPRF-202ENST00000372405 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
PTPRF-202ENST00000372405 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
PTPRF-202ENST00000372405 FCGBPQ9Y6R7 5405 aaPredicted RBP5.26□□□□□ -1.57
PTPRF-202ENST00000372405 KRTAP9-2Q9BYQ4 174 aa5.26□□□□□ -1.57
PTPRF-202ENST00000372405 NDUFAF8A1L188 74 aa5.25□□□□□ -1.57
PTPRF-202ENST00000372405 KRTAP12-3P60328 96 aa5.2□□□□□ -1.58
PTPRF-202ENST00000372405 KRTAP19-5Q3LI72 72 aa5.17□□□□□ -1.58
PTPRF-202ENST00000372405 KRTAP19-7Q3SYF9 63 aa5.11□□□□□ -1.59
PTPRF-202ENST00000372405 CRCT1Q9UGL9 99 aa5.08□□□□□ -1.6
PTPRF-202ENST00000372405 SPRR5A0A1B0GTR4 108 aa5.03□□□□□ -1.6
PTPRF-202ENST00000372405 MACF1Q9UPN3 7388 aaKnown RBP4.99□□□□□ -1.61
PTPRF-202ENST00000372405 MT1EP04732 61 aa4.99□□□□□ -1.61
PTPRF-202ENST00000372405 LUZP6Q538Z0 58 aa4.99□□□□□ -1.61
PTPRF-202ENST00000372405 MT1LQ93083 61 aa4.91□□□□□ -1.62
PTPRF-202ENST00000372405 MUC12Q9UKN1 5478 aa4.89□□□□□ -1.63
PTPRF-202ENST00000372405 LCE3CQ5T5A8 94 aa4.87□□□□□ -1.63
PTPRF-202ENST00000372405 SYNE2Q8WXH0 6885 aaKnown RBP4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms