RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 LPAP08519 4548 aa6.45□□□□□ -1.38
USF1-201ENST00000368019 RPS29P62273 56 aaKnown RBP6.43□□□□□ -1.38
USF1-201ENST00000368019 SPINK1P00995 79 aa6.4□□□□□ -1.38
USF1-201ENST00000368019 KRTAP1-4P0C5Y4 121 aa6.39□□□□□ -1.39
USF1-201ENST00000368019 C4orf48Q5BLP8 95 aa6.36□□□□□ -1.39
USF1-201ENST00000368019 RETNLBQ9BQ08 111 aa6.35□□□□□ -1.39
USF1-201ENST00000368019 LINC01554Q52M75 96 aa6.32□□□□□ -1.4
USF1-201ENST00000368019 TYMSOSQ8TAI1 123 aa6.3□□□□□ -1.4
USF1-201ENST00000368019 PRAC1Q96KF2 57 aa6.3□□□□□ -1.4
USF1-201ENST00000368019 MUC2Q02817 5179 aa6.28□□□□□ -1.4
USF1-201ENST00000368019 ADM2Q7Z4H4 148 aa6.25□□□□□ -1.41
USF1-201ENST00000368019 A8MUU9 505 aa6.24□□□□□ -1.41
USF1-201ENST00000368019 LINC00304Q8N9R0 145 aa6.24□□□□□ -1.41
USF1-201ENST00000368019 C20orf166-AS1Q96NR2 134 aa6.24□□□□□ -1.41
USF1-201ENST00000368019 KRTAP9-2Q9BYQ4 174 aa6.2□□□□□ -1.42
USF1-201ENST00000368019 LCE2AQ5TA79 106 aaPredicted RBP6.19□□□□□ -1.42
USF1-201ENST00000368019 H0YAA0 97 aa6.16□□□□□ -1.42
USF1-201ENST00000368019 CSAG1Q6PB30 78 aa6.16□□□□□ -1.42
USF1-201ENST00000368019 H1FX-AS1Q4G0G2 97 aa6.15□□□□□ -1.42
USF1-201ENST00000368019 FAT4Q6V0I7 4981 aa6.15□□□□□ -1.43
USF1-201ENST00000368019 A0A1B0GU33 70 aa6.14□□□□□ -1.43
USF1-201ENST00000368019 KRTAP3-1Q9BYR8 98 aa6.1□□□□□ -1.43
USF1-201ENST00000368019 MUC17Q685J3 4493 aa6.1□□□□□ -1.43
USF1-201ENST00000368019 COX6B2Q6YFQ2 88 aa6.09□□□□□ -1.43
USF1-201ENST00000368019 K7ERS5 55 aa6.08□□□□□ -1.44
USF1-201ENST00000368019 TPRXLQ17RH7 258 aa6.08□□□□□ -1.44
USF1-201ENST00000368019 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
USF1-201ENST00000368019 KRTAP9-6A0A140TA67 174 aa6.05□□□□□ -1.44
USF1-201ENST00000368019 C9orf92A6NGG3 77 aa6□□□□□ -1.45
USF1-201ENST00000368019 KRTAP4-1Q9BYQ7 146 aa5.94□□□□□ -1.46
USF1-201ENST00000368019 ROMO1P60602 79 aa5.92□□□□□ -1.46
USF1-201ENST00000368019 RPL37P61927 97 aaKnown RBP5.91□□□□□ -1.46
USF1-201ENST00000368019 LCE2DQ5TA82 110 aaPredicted RBP5.91□□□□□ -1.46
USF1-201ENST00000368019 KRTAP10-6P60371 365 aaPredicted RBP5.88□□□□□ -1.47
USF1-201ENST00000368019 SEC61BP60468 96 aaKnown RBP5.87□□□□□ -1.47
USF1-201ENST00000368019 KRTAP3-3Q9BYR6 98 aa5.86□□□□□ -1.47
USF1-201ENST00000368019 H3BS24 57 aa5.84□□□□□ -1.47
USF1-201ENST00000368019 XP32Q5T750 250 aa5.84□□□□□ -1.47
USF1-201ENST00000368019 LCE2CQ5TA81 110 aa5.84□□□□□ -1.47
USF1-201ENST00000368019 KRTAP3-2Q9BYR7 98 aa5.82□□□□□ -1.48
USF1-201ENST00000368019 CRCT1Q9UGL9 99 aa5.82□□□□□ -1.48
USF1-201ENST00000368019 S4R3F8 94 aa5.82□□□□□ -1.48
USF1-201ENST00000368019 KRTAP19-2Q3LHN2 52 aa5.81□□□□□ -1.48
USF1-201ENST00000368019 FSIP2Q5CZC0 6907 aa5.81□□□□□ -1.48
USF1-201ENST00000368019 KRTAP13-4Q3LI77 160 aa5.76□□□□□ -1.49
USF1-201ENST00000368019 MT1HP80294 61 aa5.75□□□□□ -1.49
USF1-201ENST00000368019 LORP23490 312 aaPredicted RBP5.69□□□□□ -1.5
USF1-201ENST00000368019 M0QZ58 72 aa5.68□□□□□ -1.5
USF1-201ENST00000368019 A0A0D9SG42 100 aa5.66□□□□□ -1.5
USF1-201ENST00000368019 P0C880 135 aa5.66□□□□□ -1.5
USF1-201ENST00000368019 CRIPTQ9P021 101 aa5.66□□□□□ -1.5
USF1-201ENST00000368019 KRTAP12-1P59990 96 aa5.63□□□□□ -1.51
USF1-201ENST00000368019 FLGP20930 4061 aaPredicted RBP5.63□□□□□ -1.51
USF1-201ENST00000368019 SPINT4Q6UDR6 99 aa5.61□□□□□ -1.51
USF1-201ENST00000368019 KRTAP12-2P59991 146 aa5.6□□□□□ -1.51
USF1-201ENST00000368019 KRTAP15-1Q3LI76 137 aa5.57□□□□□ -1.52
USF1-201ENST00000368019 M0R2T5 61 aa5.55□□□□□ -1.52
USF1-201ENST00000368019 C10orf95Q9H7T3 257 aa5.53□□□□□ -1.52
USF1-201ENST00000368019 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.43□□□□□ -1.54
USF1-201ENST00000368019 KRTAP9-8Q9BYQ0 159 aa5.43□□□□□ -1.54
USF1-201ENST00000368019 KRTAP9-7A8MTY7 169 aa5.42□□□□□ -1.54
USF1-201ENST00000368019 USH2AO75445 5202 aa5.38□□□□□ -1.55
USF1-201ENST00000368019 SSPOA2VEC9 5147 aa5.37□□□□□ -1.55
USF1-201ENST00000368019 NDUFAF8A1L188 74 aa5.37□□□□□ -1.55
USF1-201ENST00000368019 R4GN34 69 aa5.36□□□□□ -1.55
USF1-201ENST00000368019 PP632Q6XCG6 107 aa5.32□□□□□ -1.56
USF1-201ENST00000368019 MT2AP02795 61 aa5.31□□□□□ -1.56
USF1-201ENST00000368019 FCGBPQ9Y6R7 5405 aaPredicted RBP5.3□□□□□ -1.56
USF1-201ENST00000368019 LCE2BO14633 110 aa5.29□□□□□ -1.56
USF1-201ENST00000368019 MT1FP04733 61 aa5.27□□□□□ -1.57
USF1-201ENST00000368019 KRTAP19-1Q8IUB9 90 aa5.27□□□□□ -1.57
USF1-201ENST00000368019 KRTAP9-3Q9BYQ3 159 aa5.27□□□□□ -1.57
USF1-201ENST00000368019 PLAC4Q8WY50 150 aa5.24□□□□□ -1.57
USF1-201ENST00000368019 KRTAP10-10P60014 251 aa5.2□□□□□ -1.58
USF1-201ENST00000368019 KRTAP23-1A1A580 65 aa5.19□□□□□ -1.58
USF1-201ENST00000368019 MACF1Q9UPN3 7388 aaKnown RBP5.15□□□□□ -1.58
USF1-201ENST00000368019 KRTAP19-6Q3LI70 58 aa5.14□□□□□ -1.59
USF1-201ENST00000368019 SYNE2Q8WXH0 6885 aaKnown RBP5.1□□□□□ -1.59
USF1-201ENST00000368019 CAMK2N1Q7Z7J9 78 aa5.09□□□□□ -1.59
USF1-201ENST00000368019 LUZP6Q538Z0 58 aa5.07□□□□□ -1.6
USF1-201ENST00000368019 TNP1P09430 55 aa5.02□□□□□ -1.61
USF1-201ENST00000368019 KRTAP6-3Q3LI67 103 aa5.02□□□□□ -1.61
USF1-201ENST00000368019 SPRR5A0A1B0GTR4 108 aa4.99□□□□□ -1.61
USF1-201ENST00000368019 A0A0A0MQY5 61 aa4.97□□□□□ -1.61
USF1-201ENST00000368019 SPRR2GQ9BYE4 73 aa4.86□□□□□ -1.63
USF1-201ENST00000368019 NEBP20929 6669 aa4.83□□□□□ -1.64
USF1-201ENST00000368019 MT1BP07438 61 aa4.8□□□□□ -1.64
USF1-201ENST00000368019 KRTAP19-8Q3LI54 63 aa4.76□□□□□ -1.65
USF1-201ENST00000368019 MUC12Q9UKN1 5478 aa4.75□□□□□ -1.65
USF1-201ENST00000368019 KRTAP10-5P60370 271 aa4.72□□□□□ -1.65
USF1-201ENST00000368019 KRTAP20-1Q3LI63 56 aa4.72□□□□□ -1.65
USF1-201ENST00000368019 KRTAP5-9P26371 169 aa4.71□□□□□ -1.66
USF1-201ENST00000368019 KRTAP8-1Q8IUC2 63 aa4.66□□□□□ -1.66
USF1-201ENST00000368019 KMT2DO14686 5537 aa4.64□□□□□ -1.67
USF1-201ENST00000368019 LCE3AQ5TA76 89 aa4.63□□□□□ -1.67
USF1-201ENST00000368019 MDN1Q9NU22 5596 aa4.6□□□□□ -1.67
USF1-201ENST00000368019 INE1O15225 51 aa4.57□□□□□ -1.68
USF1-201ENST00000368019 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
USF1-201ENST00000368019 KRTAP2-4Q9BYR9 128 aa4.56□□□□□ -1.68
USF1-201ENST00000368019 PRO2289Q9P1D8 64 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms