RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 C5orf47Q569G3 176 aa3.87□□□□□ -1.79
VPS13A-201ENST00000355766 IGHV6-1A0A0B4J1U7 121 aa3.86□□□□□ -1.79
VPS13A-201ENST00000355766 FP248Q71RG6 208 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-201ENST00000355766 MRPL34Q9BQ48 92 aaKnown RBP3.86□□□□□ -1.79
VPS13A-201ENST00000355766 WFDC13Q8IUB5 93 aa3.85□□□□□ -1.79
VPS13A-201ENST00000355766 RETNLBQ9BQ08 111 aa3.85□□□□□ -1.79
VPS13A-201ENST00000355766 MP68P56378 58 aa3.84□□□□□ -1.79
VPS13A-201ENST00000355766 LINC00313P59037 77 aa3.84□□□□□ -1.79
VPS13A-201ENST00000355766 CCDC179H3BU77 68 aa3.83□□□□□ -1.8
VPS13A-201ENST00000355766 IGLV7-46A0A075B6I9 117 aa3.82□□□□□ -1.8
VPS13A-201ENST00000355766 TRAV22A0A0B4J277 110 aa3.82□□□□□ -1.8
VPS13A-201ENST00000355766 TMEM258P61165 79 aa3.82□□□□□ -1.8
VPS13A-201ENST00000355766 KRTAP16-1A8MUX0 517 aa3.81□□□□□ -1.8
VPS13A-201ENST00000355766 ATP5EP56381 51 aaPredicted RBP3.81□□□□□ -1.8
VPS13A-201ENST00000355766 C20orf197Q8N268 126 aa3.81□□□□□ -1.8
VPS13A-201ENST00000355766 KRTAP4-1Q9BYQ7 146 aa3.81□□□□□ -1.8
VPS13A-201ENST00000355766 ZCCHC13Q8WW36 166 aaKnown RBP3.8□□□□□ -1.8
VPS13A-201ENST00000355766 LOC101927531A0A1B0GV80 90 aa3.78□□□□□ -1.8
VPS13A-201ENST00000355766 H0Y9P7 68 aa3.78□□□□□ -1.8
VPS13A-201ENST00000355766 NOTCH2NLQ7Z3S9 236 aa3.78□□□□□ -1.8
VPS13A-201ENST00000355766 H7BZZ5 65 aa3.77□□□□□ -1.81
VPS13A-201ENST00000355766 KRTAP13-3Q3SY46 172 aa3.77□□□□□ -1.81
VPS13A-201ENST00000355766 C20orf166-AS1Q96NR2 134 aa3.77□□□□□ -1.81
VPS13A-201ENST00000355766 NDUFS5O43920 106 aa3.76□□□□□ -1.81
VPS13A-201ENST00000355766 MT1HP80294 61 aa3.76□□□□□ -1.81
VPS13A-201ENST00000355766 SPANXA2-OT1Q8N9U9 137 aa3.76□□□□□ -1.81
VPS13A-201ENST00000355766 A8MUU9 505 aa3.75□□□□□ -1.81
VPS13A-201ENST00000355766 SEC61BP60468 96 aaKnown RBP3.75□□□□□ -1.81
VPS13A-201ENST00000355766 Q75L30 129 aa3.75□□□□□ -1.81
VPS13A-201ENST00000355766 KRTAP19-2Q3LHN2 52 aa3.74□□□□□ -1.81
VPS13A-201ENST00000355766 C1orf64Q8NEQ6 169 aa3.74□□□□□ -1.81
VPS13A-201ENST00000355766 LINC00208Q96KT6 92 aa3.74□□□□□ -1.81
VPS13A-201ENST00000355766 SNURFQ9Y675 71 aa3.74□□□□□ -1.81
VPS13A-201ENST00000355766 FAM236DA0A1B0GTK5 79 aa3.73□□□□□ -1.81
VPS13A-201ENST00000355766 FAM236CP0DP71 79 aa3.73□□□□□ -1.81
VPS13A-201ENST00000355766 SVIPQ8NHG7 77 aa3.73□□□□□ -1.81
VPS13A-201ENST00000355766 CYSTM1Q9H1C7 97 aa3.73□□□□□ -1.81
VPS13A-201ENST00000355766 RPS28P62857 69 aaKnown RBP3.71□□□□□ -1.82
VPS13A-201ENST00000355766 Q5W150 140 aa3.7□□□□□ -1.82
VPS13A-201ENST00000355766 CYP4F30PQ9H0H9 118 aa3.7□□□□□ -1.82
VPS13A-201ENST00000355766 SSPOA2VEC9 5147 aa3.7□□□□□ -1.82
VPS13A-201ENST00000355766 SYNE2Q8WXH0 6885 aaKnown RBP3.69□□□□□ -1.82
VPS13A-201ENST00000355766 C7orf65Q6ZTY9 151 aa3.69□□□□□ -1.82
VPS13A-201ENST00000355766 USH2AO75445 5202 aa3.69□□□□□ -1.82
VPS13A-201ENST00000355766 RPL37P61927 97 aaKnown RBP3.68□□□□□ -1.82
VPS13A-201ENST00000355766 SERP1Q9Y6X1 66 aa3.67□□□□□ -1.82
VPS13A-201ENST00000355766 C9orf92A6NGG3 77 aa3.66□□□□□ -1.82
VPS13A-201ENST00000355766 FCGBPQ9Y6R7 5405 aaPredicted RBP3.65□□□□□ -1.82
VPS13A-201ENST00000355766 A8MUN3 132 aa3.65□□□□□ -1.83
VPS13A-201ENST00000355766 M0R2T5 61 aa3.65□□□□□ -1.83
VPS13A-201ENST00000355766 ATP11AUNQ6ZP68 121 aa3.65□□□□□ -1.83
VPS13A-201ENST00000355766 MACF1Q9UPN3 7388 aaKnown RBP3.65□□□□□ -1.83
VPS13A-201ENST00000355766 DMAC1Q96GE9 116 aa3.63□□□□□ -1.83
VPS13A-201ENST00000355766 FLGP20930 4061 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-201ENST00000355766 HRES1P13985 223 aa3.61□□□□□ -1.83
VPS13A-201ENST00000355766 PCOTHQ58A44 107 aa3.61□□□□□ -1.83
VPS13A-201ENST00000355766 OBSCNQ5VST9 7968 aa3.6□□□□□ -1.83
VPS13A-201ENST00000355766 ACYP2P14621 99 aa3.59□□□□□ -1.83
VPS13A-201ENST00000355766 SPINK7P58062 85 aa3.59□□□□□ -1.83
VPS13A-201ENST00000355766 SMIM26A0A096LP01 95 aa3.58□□□□□ -1.84
VPS13A-201ENST00000355766 COX6B2Q6YFQ2 88 aa3.57□□□□□ -1.84
VPS13A-201ENST00000355766 COA5Q86WW8 74 aa3.55□□□□□ -1.84
VPS13A-201ENST00000355766 KRTAP4-3Q9BYR4 195 aa3.55□□□□□ -1.84
VPS13A-201ENST00000355766 V9GYY9 64 aa3.55□□□□□ -1.84
VPS13A-201ENST00000355766 LCE3EQ5T5B0 92 aa3.54□□□□□ -1.84
VPS13A-201ENST00000355766 SPTSSBQ8NFR3 76 aa3.52□□□□□ -1.85
VPS13A-201ENST00000355766 NEBP20929 6669 aa3.51□□□□□ -1.85
VPS13A-201ENST00000355766 NDUFAF8A1L188 74 aa3.51□□□□□ -1.85
VPS13A-201ENST00000355766 CHKB-CPT1BH3BT56 60 aa3.51□□□□□ -1.85
VPS13A-201ENST00000355766 Q1T7F1 81 aa3.51□□□□□ -1.85
VPS13A-201ENST00000355766 C4orf26Q17RF5 130 aa3.5□□□□□ -1.85
VPS13A-201ENST00000355766 RBM12B-AS1Q9P1G2 102 aa3.49□□□□□ -1.85
VPS13A-201ENST00000355766 LCE3AQ5TA76 89 aa3.48□□□□□ -1.85
VPS13A-201ENST00000355766 KRTAP6-3Q3LI67 103 aa3.45□□□□□ -1.86
VPS13A-201ENST00000355766 H1FX-AS1Q4G0G2 97 aa3.45□□□□□ -1.86
VPS13A-201ENST00000355766 LINC01558Q9Y6Z2 57 aa3.45□□□□□ -1.86
VPS13A-201ENST00000355766 MT2AP02795 61 aa3.43□□□□□ -1.86
VPS13A-201ENST00000355766 KRTAP12-2P59991 146 aa3.43□□□□□ -1.86
VPS13A-201ENST00000355766 PRR15LQ9BU68 103 aa3.43□□□□□ -1.86
VPS13A-201ENST00000355766 KRTAP19-6Q3LI70 58 aa3.41□□□□□ -1.86
VPS13A-201ENST00000355766 S4R3F8 94 aa3.41□□□□□ -1.86
VPS13A-201ENST00000355766 MT1FP04733 61 aa3.4□□□□□ -1.87
VPS13A-201ENST00000355766 SEC61GP60059 68 aa3.39□□□□□ -1.87
VPS13A-201ENST00000355766 A0A1B0GU69 56 aa3.38□□□□□ -1.87
VPS13A-201ENST00000355766 H0YAA0 97 aa3.37□□□□□ -1.87
VPS13A-201ENST00000355766 Q5VV11 94 aa3.37□□□□□ -1.87
VPS13A-201ENST00000355766 LCA10Q71F78 164 aa3.37□□□□□ -1.87
VPS13A-201ENST00000355766 KRTAP20-1Q3LI63 56 aa3.36□□□□□ -1.87
VPS13A-201ENST00000355766 CSAG1Q6PB30 78 aa3.36□□□□□ -1.87
VPS13A-201ENST00000355766 PRAC1Q96KF2 57 aa3.36□□□□□ -1.87
VPS13A-201ENST00000355766 KRTAP10-10P60014 251 aa3.35□□□□□ -1.87
VPS13A-201ENST00000355766 MUC12Q9UKN1 5478 aa3.35□□□□□ -1.87
VPS13A-201ENST00000355766 PSPHP1O15172 72 aa3.34□□□□□ -1.87
VPS13A-201ENST00000355766 UQCR11O14957 56 aa3.31□□□□□ -1.88
VPS13A-201ENST00000355766 KRTAP5-2Q701N4 177 aa3.31□□□□□ -1.88
VPS13A-201ENST00000355766 A6NED7 52 aa3.29□□□□□ -1.88
VPS13A-201ENST00000355766 CDC42SE1Q9NRR8 79 aa3.29□□□□□ -1.88
VPS13A-201ENST00000355766 A0A1B0GU33 70 aa3.27□□□□□ -1.89
VPS13A-201ENST00000355766 A8MU10 97 aa3.27□□□□□ -1.89
VPS13A-201ENST00000355766 PRO0628Q9UI54 55 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms