RNA–Protein interactions for RNA: ENST00000342503.8

RTN1-202, Transcript of reticulon 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RTN1, Length 1,703 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-202ENST00000342503 PRR15LQ9BU68 103 aa10.36□□□□□ -0.75
RTN1-202ENST00000342503 LRP2P98164 4655 aa10.34□□□□□ -0.75
RTN1-202ENST00000342503 Q5VV11 94 aa10.3□□□□□ -0.76
RTN1-202ENST00000342503 SPTSSBQ8NFR3 76 aa10.19□□□□□ -0.78
RTN1-202ENST00000342503 SEC61BP60468 96 aaKnown RBP10.16□□□□□ -0.78
RTN1-202ENST00000342503 BRK1Q8WUW1 75 aa10.15□□□□□ -0.78
RTN1-202ENST00000342503 A0A1B0GU69 56 aa10.14□□□□□ -0.79
RTN1-202ENST00000342503 PCLOQ9Y6V0 5065 aa10.13□□□□□ -0.79
RTN1-202ENST00000342503 A6NED7 52 aa10.07□□□□□ -0.8
RTN1-202ENST00000342503 MUC17Q685J3 4493 aa10.05□□□□□ -0.8
RTN1-202ENST00000342503 RBM12B-AS1Q9P1G2 102 aa10.05□□□□□ -0.8
RTN1-202ENST00000342503 LCA10Q71F78 164 aa10.04□□□□□ -0.8
RTN1-202ENST00000342503 H1FX-AS1Q4G0G2 97 aa10.04□□□□□ -0.8
RTN1-202ENST00000342503 S4R3F8 94 aa10.04□□□□□ -0.8
RTN1-202ENST00000342503 PRO0628Q9UI54 55 aa10.02□□□□□ -0.81
RTN1-202ENST00000342503 KRTAP4-1Q9BYQ7 146 aa10.01□□□□□ -0.81
RTN1-202ENST00000342503 SEC61GP60059 68 aa9.99□□□□□ -0.81
RTN1-202ENST00000342503 A8MU10 97 aa9.96□□□□□ -0.81
RTN1-202ENST00000342503 HERC1Q15751 4861 aa9.96□□□□□ -0.81
RTN1-202ENST00000342503 HMCN2Q8NDA2 5059 aa9.92□□□□□ -0.82
RTN1-202ENST00000342503 CDC42SE1Q9NRR8 79 aa9.91□□□□□ -0.82
RTN1-202ENST00000342503 UQCR11O14957 56 aa9.86□□□□□ -0.83
RTN1-202ENST00000342503 SPATA8Q6RVD6 105 aa9.8□□□□□ -0.84
RTN1-202ENST00000342503 MIR22HGQ0VDD5 57 aa9.79□□□□□ -0.84
RTN1-202ENST00000342503 KRTAP4-8Q9BYQ9 185 aa9.79□□□□□ -0.84
RTN1-202ENST00000342503 A0A1B0GU33 70 aa9.76□□□□□ -0.85
RTN1-202ENST00000342503 CSAG1Q6PB30 78 aa9.76□□□□□ -0.85
RTN1-202ENST00000342503 KRTAP19-2Q3LHN2 52 aa9.75□□□□□ -0.85
RTN1-202ENST00000342503 KRTAP10-6P60371 365 aaPredicted RBP9.73□□□□□ -0.85
RTN1-202ENST00000342503 SVIPQ8NHG7 77 aa9.7□□□□□ -0.86
RTN1-202ENST00000342503 H0YAA0 97 aa9.67□□□□□ -0.86
RTN1-202ENST00000342503 ADM2Q7Z4H4 148 aa9.65□□□□□ -0.87
RTN1-202ENST00000342503 P0C880 135 aa9.63□□□□□ -0.87
RTN1-202ENST00000342503 KRTAP9-2Q9BYQ4 174 aa9.6□□□□□ -0.87
RTN1-202ENST00000342503 MUC2Q02817 5179 aa9.59□□□□□ -0.87
RTN1-202ENST00000342503 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.58□□□□□ -0.88
RTN1-202ENST00000342503 PMAIP1Q13794 54 aa9.58□□□□□ -0.88
RTN1-202ENST00000342503 KRTAP9-6A0A140TA67 174 aa9.54□□□□□ -0.88
RTN1-202ENST00000342503 KRTAP13-4Q3LI77 160 aa9.53□□□□□ -0.88
RTN1-202ENST00000342503 FLGP20930 4061 aaPredicted RBP9.51□□□□□ -0.89
RTN1-202ENST00000342503 A6NN06 94 aa9.51□□□□□ -0.89
RTN1-202ENST00000342503 RNF213Q63HN8 5207 aa9.44□□□□□ -0.9
RTN1-202ENST00000342503 UBR4Q5T4S7 5183 aa9.39□□□□□ -0.91
RTN1-202ENST00000342503 LCE3BQ5TA77 95 aa9.38□□□□□ -0.91
RTN1-202ENST00000342503 KRTAP4-12Q9BQ66 201 aa9.38□□□□□ -0.91
RTN1-202ENST00000342503 A0A0D9SG42 100 aa9.37□□□□□ -0.91
RTN1-202ENST00000342503 M0QZ58 72 aa9.34□□□□□ -0.91
RTN1-202ENST00000342503 K7ERS5 55 aa9.26□□□□□ -0.93
RTN1-202ENST00000342503 KTN1-AS1Q86SY8 53 aa9.25□□□□□ -0.93
RTN1-202ENST00000342503 R4GN34 69 aa9.25□□□□□ -0.93
RTN1-202ENST00000342503 KRTAP19-1Q8IUB9 90 aa9.23□□□□□ -0.93
RTN1-202ENST00000342503 MT1HP80294 61 aa9.22□□□□□ -0.93
RTN1-202ENST00000342503 FAT4Q6V0I7 4981 aa9.19□□□□□ -0.94
RTN1-202ENST00000342503 KRTAP12-2P59991 146 aa9.16□□□□□ -0.94
RTN1-202ENST00000342503 M0R2T5 61 aa9.15□□□□□ -0.94
RTN1-202ENST00000342503 KRTAP12-1P59990 96 aa9.15□□□□□ -0.94
RTN1-202ENST00000342503 LINC01554Q52M75 96 aa9.14□□□□□ -0.95
RTN1-202ENST00000342503 SPINT4Q6UDR6 99 aa9.13□□□□□ -0.95
RTN1-202ENST00000342503 KRTAP9-9Q9BYP9 154 aa9.12□□□□□ -0.95
RTN1-202ENST00000342503 KRTAP9-4Q9BYQ2 154 aa9.12□□□□□ -0.95
RTN1-202ENST00000342503 CRIPTQ9P021 101 aa9.03□□□□□ -0.96
RTN1-202ENST00000342503 PRAC1Q96KF2 57 aa9.01□□□□□ -0.97
RTN1-202ENST00000342503 KRTAP4-8A0A0G2JLE6 195 aa8.98□□□□□ -0.97
RTN1-202ENST00000342503 ROMO1P60602 79 aa8.96□□□□□ -0.98
RTN1-202ENST00000342503 MT2AP02795 61 aa8.91□□□□□ -0.98
RTN1-202ENST00000342503 KRTAP9-8Q9BYQ0 159 aa8.91□□□□□ -0.98
RTN1-202ENST00000342503 MT1FP04733 61 aa8.88□□□□□ -0.99
RTN1-202ENST00000342503 KRTAP10-10P60014 251 aa8.85□□□□□ -0.99
RTN1-202ENST00000342503 SPRR2GQ9BYE4 73 aa8.83□□□□□ -1
RTN1-202ENST00000342503 LCE1DQ5T752 114 aa8.76□□□□□ -1.01
RTN1-202ENST00000342503 KRTAP25-1Q3LHN0 102 aa8.7□□□□□ -1.02
RTN1-202ENST00000342503 CAMK2N1Q7Z7J9 78 aa8.7□□□□□ -1.02
RTN1-202ENST00000342503 KRTAP4-7Q9BYR0 210 aa8.68□□□□□ -1.02
RTN1-202ENST00000342503 C10orf95Q9H7T3 257 aa8.67□□□□□ -1.02
RTN1-202ENST00000342503 H3BS24 57 aa8.64□□□□□ -1.03
RTN1-202ENST00000342503 PLAC4Q8WY50 150 aa8.6□□□□□ -1.03
RTN1-202ENST00000342503 KRTAP9-3Q9BYQ3 159 aa8.57□□□□□ -1.04
RTN1-202ENST00000342503 KRTAP19-8Q3LI54 63 aa8.56□□□□□ -1.04
RTN1-202ENST00000342503 KRTAP19-4Q3LI73 84 aa8.49□□□□□ -1.05
RTN1-202ENST00000342503 KRTAP4-9Q9BYQ8 210 aa8.48□□□□□ -1.05
RTN1-202ENST00000342503 LCE4AQ5TA78 99 aa8.46□□□□□ -1.06
RTN1-202ENST00000342503 MT1BP07438 61 aa8.45□□□□□ -1.06
RTN1-202ENST00000342503 TNP1P09430 55 aa8.31□□□□□ -1.08
RTN1-202ENST00000342503 KRTAP4-2Q9BYR5 136 aa8.28□□□□□ -1.08
RTN1-202ENST00000342503 KRTAP9-7A8MTY7 169 aa8.26□□□□□ -1.09
RTN1-202ENST00000342503 MT1XP80297 61 aa8.23□□□□□ -1.09
RTN1-202ENST00000342503 KRTAP10-5P60370 271 aa8.23□□□□□ -1.09
RTN1-202ENST00000342503 KRTAP4-11Q9BYQ6 195 aa8.18□□□□□ -1.1
RTN1-202ENST00000342503 PP632Q6XCG6 107 aa8.16□□□□□ -1.1
RTN1-202ENST00000342503 KRTAP23-1A1A580 65 aa8.09□□□□□ -1.11
RTN1-202ENST00000342503 LCE5AQ5TCM9 118 aa8.09□□□□□ -1.11
RTN1-202ENST00000342503 PRO2289Q9P1D8 64 aa8.06□□□□□ -1.12
RTN1-202ENST00000342503 USH2AO75445 5202 aa8.04□□□□□ -1.12
RTN1-202ENST00000342503 LCE3AQ5TA76 89 aa7.95□□□□□ -1.14
RTN1-202ENST00000342503 KRTAP10-7P60409 375 aaPredicted RBP7.94□□□□□ -1.14
RTN1-202ENST00000342503 KRTAP10-12P60413 245 aa7.87□□□□□ -1.15
RTN1-202ENST00000342503 SSPOA2VEC9 5147 aa7.79□□□□□ -1.16
RTN1-202ENST00000342503 KRTAP15-1Q3LI76 137 aa7.78□□□□□ -1.16
RTN1-202ENST00000342503 KRTAP8-1Q8IUC2 63 aa7.76□□□□□ -1.17
RTN1-202ENST00000342503 KRTAP19-6Q3LI70 58 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms