RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 MUC2Q02817 5179 aa7.47□□□□□ -1.21
CBX3-201ENST00000337620 RBM12B-AS1Q9P1G2 102 aa7.46□□□□□ -1.22
CBX3-201ENST00000337620 UBR4Q5T4S7 5183 aa7.44□□□□□ -1.22
CBX3-201ENST00000337620 CHKB-CPT1BH3BT56 60 aa7.42□□□□□ -1.22
CBX3-201ENST00000337620 RNF213Q63HN8 5207 aa7.38□□□□□ -1.23
CBX3-201ENST00000337620 H1FX-AS1Q4G0G2 97 aa7.36□□□□□ -1.23
CBX3-201ENST00000337620 S4R3F8 94 aa7.3□□□□□ -1.24
CBX3-201ENST00000337620 PSPHP1O15172 72 aa7.28□□□□□ -1.24
CBX3-201ENST00000337620 LCA10Q71F78 164 aa7.28□□□□□ -1.24
CBX3-201ENST00000337620 KTN1-AS1Q86SY8 53 aa7.28□□□□□ -1.24
CBX3-201ENST00000337620 Q5VV11 94 aa7.28□□□□□ -1.24
CBX3-201ENST00000337620 KRTAP19-2Q3LHN2 52 aa7.27□□□□□ -1.25
CBX3-201ENST00000337620 SPTSSBQ8NFR3 76 aa7.25□□□□□ -1.25
CBX3-201ENST00000337620 KRTAP3-3Q9BYR6 98 aa7.23□□□□□ -1.25
CBX3-201ENST00000337620 A6NN06 94 aa7.18□□□□□ -1.26
CBX3-201ENST00000337620 A8MU10 97 aa7.18□□□□□ -1.26
CBX3-201ENST00000337620 FLGP20930 4061 aaPredicted RBP7.18□□□□□ -1.26
CBX3-201ENST00000337620 LCE2CQ5TA81 110 aa7.15□□□□□ -1.27
CBX3-201ENST00000337620 CSAG1Q6PB30 78 aa7.15□□□□□ -1.27
CBX3-201ENST00000337620 LINC01558Q9Y6Z2 57 aa7.15□□□□□ -1.27
CBX3-201ENST00000337620 FAT4Q6V0I7 4981 aa7.14□□□□□ -1.27
CBX3-201ENST00000337620 CDC42SE1Q9NRR8 79 aa7.11□□□□□ -1.27
CBX3-201ENST00000337620 PRR15LQ9BU68 103 aa7.1□□□□□ -1.27
CBX3-201ENST00000337620 A0A1B0GU69 56 aa7.09□□□□□ -1.28
CBX3-201ENST00000337620 A6NED7 52 aa7.04□□□□□ -1.28
CBX3-201ENST00000337620 MT1HP80294 61 aa7.01□□□□□ -1.29
CBX3-201ENST00000337620 M0R2T5 61 aa7□□□□□ -1.29
CBX3-201ENST00000337620 ADM2Q7Z4H4 148 aa6.98□□□□□ -1.29
CBX3-201ENST00000337620 KRTAP3-2Q9BYR7 98 aa6.95□□□□□ -1.3
CBX3-201ENST00000337620 KRTAP10-6P60371 365 aaPredicted RBP6.94□□□□□ -1.3
CBX3-201ENST00000337620 H0YAA0 97 aa6.93□□□□□ -1.3
CBX3-201ENST00000337620 P0C880 135 aa6.92□□□□□ -1.3
CBX3-201ENST00000337620 A0A1B0GU33 70 aa6.89□□□□□ -1.31
CBX3-201ENST00000337620 LCE2DQ5TA82 110 aaPredicted RBP6.87□□□□□ -1.31
CBX3-201ENST00000337620 UQCR11O14957 56 aa6.85□□□□□ -1.31
CBX3-201ENST00000337620 LINC01554Q52M75 96 aa6.8□□□□□ -1.32
CBX3-201ENST00000337620 SPATA8Q6RVD6 105 aa6.79□□□□□ -1.32
CBX3-201ENST00000337620 LORP23490 312 aaPredicted RBP6.78□□□□□ -1.32
CBX3-201ENST00000337620 MIR22HGQ0VDD5 57 aa6.77□□□□□ -1.33
CBX3-201ENST00000337620 LCE2AQ5TA79 106 aaPredicted RBP6.76□□□□□ -1.33
CBX3-201ENST00000337620 KRTAP13-4Q3LI77 160 aa6.76□□□□□ -1.33
CBX3-201ENST00000337620 KRTAP9-8Q9BYQ0 159 aa6.74□□□□□ -1.33
CBX3-201ENST00000337620 R4GN34 69 aa6.74□□□□□ -1.33
CBX3-201ENST00000337620 M0QZ58 72 aa6.73□□□□□ -1.33
CBX3-201ENST00000337620 MT2AP02795 61 aa6.73□□□□□ -1.33
CBX3-201ENST00000337620 PRAC1Q96KF2 57 aa6.73□□□□□ -1.33
CBX3-201ENST00000337620 H3BS24 57 aa6.71□□□□□ -1.34
CBX3-201ENST00000337620 KRTAP10-10P60014 251 aa6.7□□□□□ -1.34
CBX3-201ENST00000337620 MT1FP04733 61 aa6.69□□□□□ -1.34
CBX3-201ENST00000337620 A0A0D9SG42 100 aa6.67□□□□□ -1.34
CBX3-201ENST00000337620 CRIPTQ9P021 101 aa6.66□□□□□ -1.34
CBX3-201ENST00000337620 KRTAP19-1Q8IUB9 90 aa6.54□□□□□ -1.36
CBX3-201ENST00000337620 SPRR2GQ9BYE4 73 aa6.54□□□□□ -1.36
CBX3-201ENST00000337620 SPINT4Q6UDR6 99 aa6.52□□□□□ -1.37
CBX3-201ENST00000337620 KRTAP9-3Q9BYQ3 159 aa6.5□□□□□ -1.37
CBX3-201ENST00000337620 KRTAP12-1P59990 96 aa6.49□□□□□ -1.37
CBX3-201ENST00000337620 K7ERS5 55 aa6.48□□□□□ -1.37
CBX3-201ENST00000337620 KRTAP12-2P59991 146 aa6.48□□□□□ -1.37
CBX3-201ENST00000337620 ROMO1P60602 79 aa6.37□□□□□ -1.39
CBX3-201ENST00000337620 KRTAP25-1Q3LHN0 102 aa6.37□□□□□ -1.39
CBX3-201ENST00000337620 KRTAP19-8Q3LI54 63 aa6.37□□□□□ -1.39
CBX3-201ENST00000337620 PLAC4Q8WY50 150 aa6.36□□□□□ -1.39
CBX3-201ENST00000337620 LCE2BO14633 110 aa6.34□□□□□ -1.4
CBX3-201ENST00000337620 CAMK2N1Q7Z7J9 78 aa6.32□□□□□ -1.4
CBX3-201ENST00000337620 MT1BP07438 61 aa6.31□□□□□ -1.4
CBX3-201ENST00000337620 USH2AO75445 5202 aa6.26□□□□□ -1.41
CBX3-201ENST00000337620 C10orf95Q9H7T3 257 aa6.15□□□□□ -1.42
CBX3-201ENST00000337620 MT1XP80297 61 aa6.09□□□□□ -1.43
CBX3-201ENST00000337620 KRTAP10-5P60370 271 aa6.08□□□□□ -1.44
CBX3-201ENST00000337620 FSIP2Q5CZC0 6907 aa6.08□□□□□ -1.44
CBX3-201ENST00000337620 SSPOA2VEC9 5147 aa6.06□□□□□ -1.44
CBX3-201ENST00000337620 PRO2289Q9P1D8 64 aa6.05□□□□□ -1.44
CBX3-201ENST00000337620 KRTAP9-2Q9BYQ4 174 aa5.98□□□□□ -1.45
CBX3-201ENST00000337620 TNP1P09430 55 aa5.98□□□□□ -1.45
CBX3-201ENST00000337620 KRTAP19-6Q3LI70 58 aa5.95□□□□□ -1.46
CBX3-201ENST00000337620 KRTAP15-1Q3LI76 137 aa5.94□□□□□ -1.46
CBX3-201ENST00000337620 KRTAP10-7P60409 375 aaPredicted RBP5.87□□□□□ -1.47
CBX3-201ENST00000337620 NDUFAF8A1L188 74 aa5.84□□□□□ -1.47
CBX3-201ENST00000337620 FCGBPQ9Y6R7 5405 aaPredicted RBP5.81□□□□□ -1.48
CBX3-201ENST00000337620 KRTAP10-12P60413 245 aa5.78□□□□□ -1.48
CBX3-201ENST00000337620 CRCT1Q9UGL9 99 aa5.77□□□□□ -1.49
CBX3-201ENST00000337620 LOC100996750A0A140TA64 210 aa5.75□□□□□ -1.49
CBX3-201ENST00000337620 KRTAP4-6Q9BYQ5 205 aa5.75□□□□□ -1.49
CBX3-201ENST00000337620 KMT2DO14686 5537 aa5.75□□□□□ -1.49
CBX3-201ENST00000337620 LCE3AQ5TA76 89 aa5.74□□□□□ -1.49
CBX3-201ENST00000337620 PP632Q6XCG6 107 aa5.73□□□□□ -1.49
CBX3-201ENST00000337620 KRTAP23-1A1A580 65 aa5.72□□□□□ -1.49
CBX3-201ENST00000337620 A0A0A0MQY5 61 aa5.69□□□□□ -1.5
CBX3-201ENST00000337620 KRTAP4-8A0A0G2JLE6 195 aa5.66□□□□□ -1.5
CBX3-201ENST00000337620 KRTAP4-8Q9BYQ9 185 aa5.66□□□□□ -1.5
CBX3-201ENST00000337620 KRTAP8-1Q8IUC2 63 aa5.58□□□□□ -1.52
CBX3-201ENST00000337620 MACF1Q9UPN3 7388 aaKnown RBP5.54□□□□□ -1.52
CBX3-201ENST00000337620 KRTAP9-6A0A140TA67 174 aa5.53□□□□□ -1.52
CBX3-201ENST00000337620 KRTAP19-5Q3LI72 72 aa5.51□□□□□ -1.53
CBX3-201ENST00000337620 KRTAP12-3P60328 96 aa5.5□□□□□ -1.53
CBX3-201ENST00000337620 LUZP6Q538Z0 58 aa5.5□□□□□ -1.53
CBX3-201ENST00000337620 KRTAP19-7Q3SYF9 63 aa5.44□□□□□ -1.54
CBX3-201ENST00000337620 SYNE2Q8WXH0 6885 aaKnown RBP5.4□□□□□ -1.54
CBX3-201ENST00000337620 MT1EP04732 61 aa5.34□□□□□ -1.55
CBX3-201ENST00000337620 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms