RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 Q96NJ1 140 aa6.01□□□□□ -1.45
VPS4B-204ENST00000589604 LINC00472Q9H8W2 130 aa6.01□□□□□ -1.45
VPS4B-204ENST00000589604 CXCL6P80162 114 aa5.99□□□□□ -1.45
VPS4B-204ENST00000589604 ATP5EP2Q5VTU8 51 aa5.99□□□□□ -1.45
VPS4B-204ENST00000589604 KRTAP9-2Q9BYQ4 174 aa5.99□□□□□ -1.45
VPS4B-204ENST00000589604 V9GYY9 64 aa5.99□□□□□ -1.45
VPS4B-204ENST00000589604 KRTAP9-6A0A140TA67 174 aa5.98□□□□□ -1.45
VPS4B-204ENST00000589604 Q5XG85 94 aa5.98□□□□□ -1.45
VPS4B-204ENST00000589604 DSCR10P59022 87 aa5.98□□□□□ -1.45
VPS4B-204ENST00000589604 DEFB116Q30KQ4 102 aa5.98□□□□□ -1.45
VPS4B-204ENST00000589604 BPY2O14599 106 aa5.97□□□□□ -1.45
VPS4B-204ENST00000589604 ASB16-AS1Q495Z4 193 aa5.97□□□□□ -1.45
VPS4B-204ENST00000589604 LINC00304Q8N9R0 145 aa5.96□□□□□ -1.46
VPS4B-204ENST00000589604 IMUPQ9GZP8 106 aa5.96□□□□□ -1.46
VPS4B-204ENST00000589604 SS18L2Q9UHA2 77 aa5.96□□□□□ -1.46
VPS4B-204ENST00000589604 HMCN2Q8NDA2 5059 aa5.96□□□□□ -1.46
VPS4B-204ENST00000589604 SPINK1P00995 79 aa5.94□□□□□ -1.46
VPS4B-204ENST00000589604 IGKV4-1P06312 121 aa5.94□□□□□ -1.46
VPS4B-204ENST00000589604 Q8N9L7 120 aa5.94□□□□□ -1.46
VPS4B-204ENST00000589604 SPAG11AQ6PDA7 123 aa5.94□□□□□ -1.46
VPS4B-204ENST00000589604 A0A087WVE0 104 aa5.93□□□□□ -1.46
VPS4B-204ENST00000589604 RPS29P62273 56 aaKnown RBP5.93□□□□□ -1.46
VPS4B-204ENST00000589604 C1orf195Q5TG92 126 aa5.93□□□□□ -1.46
VPS4B-204ENST00000589604 K7EQZ3 153 aa5.91□□□□□ -1.46
VPS4B-204ENST00000589604 J3KT08 172 aa5.91□□□□□ -1.46
VPS4B-204ENST00000589604 A8MWP4 228 aa5.9□□□□□ -1.47
VPS4B-204ENST00000589604 HIST1H4AP62805 103 aaKnown RBP5.9□□□□□ -1.47
VPS4B-204ENST00000589604 LIMD2Q9BT23 127 aa5.9□□□□□ -1.47
VPS4B-204ENST00000589604 UBR4Q5T4S7 5183 aa5.89□□□□□ -1.47
VPS4B-204ENST00000589604 PRR15Q8IV56 129 aa5.89□□□□□ -1.47
VPS4B-204ENST00000589604 RETNLBQ9BQ08 111 aa5.88□□□□□ -1.47
VPS4B-204ENST00000589604 SCGB1A1P11684 91 aa5.87□□□□□ -1.47
VPS4B-204ENST00000589604 LPAP08519 4548 aa5.86□□□□□ -1.47
VPS4B-204ENST00000589604 FAM236AA0A1B0GUQ0 79 aa5.85□□□□□ -1.47
VPS4B-204ENST00000589604 FAM236BA0A1B0GV22 79 aa5.85□□□□□ -1.47
VPS4B-204ENST00000589604 A0A1B0GVX0 72 aa5.85□□□□□ -1.47
VPS4B-204ENST00000589604 NOTCH2NLQ7Z3S9 236 aa5.85□□□□□ -1.47
VPS4B-204ENST00000589604 LRP2P98164 4655 aa5.84□□□□□ -1.47
VPS4B-204ENST00000589604 MMP24-AS1A0A0U1RRL7 71 aa5.84□□□□□ -1.47
VPS4B-204ENST00000589604 NDUFB1O75438 58 aa5.83□□□□□ -1.48
VPS4B-204ENST00000589604 KRTAP3-1Q9BYR8 98 aa5.83□□□□□ -1.48
VPS4B-204ENST00000589604 IGHV6-1A0A0B4J1U7 121 aa5.82□□□□□ -1.48
VPS4B-204ENST00000589604 HCG22E2RYF7 251 aa5.82□□□□□ -1.48
VPS4B-204ENST00000589604 PRR4Q16378 134 aa5.82□□□□□ -1.48
VPS4B-204ENST00000589604 C8orf17Q9NRJ1 99 aa5.82□□□□□ -1.48
VPS4B-204ENST00000589604 KRTAP4-8A0A0G2JLE6 195 aa5.81□□□□□ -1.48
VPS4B-204ENST00000589604 WFDC13Q8IUB5 93 aa5.79□□□□□ -1.48
VPS4B-204ENST00000589604 CASC2Q6XLA1 102 aa5.78□□□□□ -1.48
VPS4B-204ENST00000589604 hDV103S1A0JD37 113 aa5.77□□□□□ -1.49
VPS4B-204ENST00000589604 KRTAP16-1A8MUX0 517 aa5.77□□□□□ -1.49
VPS4B-204ENST00000589604 C8orf87E5RJ46 101 aa5.77□□□□□ -1.49
VPS4B-204ENST00000589604 ATOX1O00244 68 aa5.77□□□□□ -1.49
VPS4B-204ENST00000589604 LINC00313P59037 77 aa5.75□□□□□ -1.49
VPS4B-204ENST00000589604 OCR1Q9BZK8 76 aa5.75□□□□□ -1.49
VPS4B-204ENST00000589604 IGLV7-46A0A075B6I9 117 aa5.75□□□□□ -1.49
VPS4B-204ENST00000589604 TMEM254Q8TBM7 123 aa5.74□□□□□ -1.49
VPS4B-204ENST00000589604 MRPL34Q9BQ48 92 aaKnown RBP5.73□□□□□ -1.49
VPS4B-204ENST00000589604 XP32Q5T750 250 aa5.72□□□□□ -1.49
VPS4B-204ENST00000589604 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
VPS4B-204ENST00000589604 FP248Q71RG6 208 aaPredicted RBP5.72□□□□□ -1.49
VPS4B-204ENST00000589604 ANAPC13Q9BS18 74 aa5.72□□□□□ -1.49
VPS4B-204ENST00000589604 KRTAP13-3Q3SY46 172 aa5.72□□□□□ -1.49
VPS4B-204ENST00000589604 TRAV7A0A075B6U4 112 aa5.71□□□□□ -1.5
VPS4B-204ENST00000589604 SERP2Q8N6R1 65 aa5.71□□□□□ -1.5
VPS4B-204ENST00000589604 TPRXLQ17RH7 258 aa5.7□□□□□ -1.5
VPS4B-204ENST00000589604 SMIM20Q8N5G0 67 aa5.7□□□□□ -1.5
VPS4B-204ENST00000589604 Q8N9P0 234 aaPredicted RBP5.7□□□□□ -1.5
VPS4B-204ENST00000589604 PRAC1Q96KF2 57 aa5.7□□□□□ -1.5
VPS4B-204ENST00000589604 C9orf92A6NGG3 77 aa5.69□□□□□ -1.5
VPS4B-204ENST00000589604 KRTAP9-9Q9BYP9 154 aa5.69□□□□□ -1.5
VPS4B-204ENST00000589604 KRTAP9-4Q9BYQ2 154 aa5.69□□□□□ -1.5
VPS4B-204ENST00000589604 COX7CP15954 63 aa5.68□□□□□ -1.5
VPS4B-204ENST00000589604 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
VPS4B-204ENST00000589604 RNF213Q63HN8 5207 aa5.67□□□□□ -1.5
VPS4B-204ENST00000589604 CCDC179H3BU77 68 aa5.66□□□□□ -1.5
VPS4B-204ENST00000589604 UQCRQO14949 82 aa5.66□□□□□ -1.5
VPS4B-204ENST00000589604 A8MUU9 505 aa5.65□□□□□ -1.51
VPS4B-204ENST00000589604 Q5W150 140 aa5.65□□□□□ -1.51
VPS4B-204ENST00000589604 C20orf166-AS1Q96NR2 134 aa5.65□□□□□ -1.51
VPS4B-204ENST00000589604 NDUFS5O43920 106 aa5.64□□□□□ -1.51
VPS4B-204ENST00000589604 TP53AIP1Q9HCN2 124 aa5.64□□□□□ -1.51
VPS4B-204ENST00000589604 A0A0U1RQV1 116 aa5.6□□□□□ -1.51
VPS4B-204ENST00000589604 CYSTM1Q9H1C7 97 aa5.6□□□□□ -1.51
VPS4B-204ENST00000589604 MUC17Q685J3 4493 aa5.6□□□□□ -1.51
VPS4B-204ENST00000589604 TRAV22A0A0B4J277 110 aa5.59□□□□□ -1.51
VPS4B-204ENST00000589604 H0Y9P7 68 aa5.59□□□□□ -1.51
VPS4B-204ENST00000589604 C20orf197Q8N268 126 aa5.59□□□□□ -1.51
VPS4B-204ENST00000589604 ZCCHC13Q8WW36 166 aaKnown RBP5.59□□□□□ -1.51
VPS4B-204ENST00000589604 MUC2Q02817 5179 aa5.59□□□□□ -1.51
VPS4B-204ENST00000589604 KLKP1Q107X0 134 aa5.58□□□□□ -1.52
VPS4B-204ENST00000589604 KRTAP5-3Q6L8H2 238 aa5.57□□□□□ -1.52
VPS4B-204ENST00000589604 SNURFQ9Y675 71 aa5.57□□□□□ -1.52
VPS4B-204ENST00000589604 KRTAP9-8Q9BYQ0 159 aa5.56□□□□□ -1.52
VPS4B-204ENST00000589604 LINC00208Q96KT6 92 aa5.56□□□□□ -1.52
VPS4B-204ENST00000589604 H3BPC8 53 aa5.55□□□□□ -1.52
VPS4B-204ENST00000589604 MP68P56378 58 aa5.55□□□□□ -1.52
VPS4B-204ENST00000589604 RPL37P61927 97 aaKnown RBP5.55□□□□□ -1.52
VPS4B-204ENST00000589604 C1orf64Q8NEQ6 169 aa5.54□□□□□ -1.52
VPS4B-204ENST00000589604 KRTAP4-1Q9BYQ7 146 aa5.54□□□□□ -1.52
VPS4B-204ENST00000589604 C4orf26Q17RF5 130 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms