RNA–Protein interactions for RNA: ENST00000372922.8

TRERF1-204, Transcript of transcriptional regulating factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRERF1, Length 7,286 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1-204ENST00000372922 TPRXLQ17RH7 258 aa5.26□□□□□ -1.57
TRERF1-204ENST00000372922 KRTAP1-4P0C5Y4 121 aa5.25□□□□□ -1.57
TRERF1-204ENST00000372922 H0YAA0 97 aa5.25□□□□□ -1.57
TRERF1-204ENST00000372922 KRTAP10-10P60014 251 aa5.24□□□□□ -1.57
TRERF1-204ENST00000372922 APCP25054 2843 aa5.22□□□□□ -1.57
TRERF1-204ENST00000372922 ITPR1Q14643 2758 aa5.22□□□□□ -1.57
TRERF1-204ENST00000372922 PRO2289Q9P1D8 64 aa5.22□□□□□ -1.57
TRERF1-204ENST00000372922 VPS13AQ96RL7 3174 aa5.19□□□□□ -1.58
TRERF1-204ENST00000372922 CRYBG3Q68DQ2 2970 aa5.17□□□□□ -1.58
TRERF1-204ENST00000372922 UTP20O75691 2785 aaKnown RBP5.16□□□□□ -1.58
TRERF1-204ENST00000372922 REV3LO60673 3130 aa5.15□□□□□ -1.58
TRERF1-204ENST00000372922 HIVEP1P15822 2718 aa5.12□□□□□ -1.59
TRERF1-204ENST00000372922 KRTAP13-3Q3SY46 172 aa5.11□□□□□ -1.59
TRERF1-204ENST00000372922 KALRNO60229 2985 aa5.11□□□□□ -1.59
TRERF1-204ENST00000372922 COL6A3P12111 3177 aa5.09□□□□□ -1.59
TRERF1-204ENST00000372922 VCANP13611 3396 aa5.08□□□□□ -1.6
TRERF1-204ENST00000372922 LRBAP50851 2863 aa5.08□□□□□ -1.6
TRERF1-204ENST00000372922 TENM4Q6N022 2769 aa5.08□□□□□ -1.6
TRERF1-204ENST00000372922 CFAP47Q6ZTR5 3102 aa5.07□□□□□ -1.6
TRERF1-204ENST00000372922 TACC2O95359 2948 aa5.06□□□□□ -1.6
TRERF1-204ENST00000372922 SPEGQ15772 3267 aa5.06□□□□□ -1.6
TRERF1-204ENST00000372922 LAMA1P25391 3075 aa5.05□□□□□ -1.6
TRERF1-204ENST00000372922 FLNCQ14315 2725 aa5.03□□□□□ -1.6
TRERF1-204ENST00000372922 DMXL2Q8TDJ6 3036 aa5.01□□□□□ -1.61
TRERF1-204ENST00000372922 ATMQ13315 3056 aa5.01□□□□□ -1.61
TRERF1-204ENST00000372922 COL12A1Q99715 3063 aa5□□□□□ -1.61
TRERF1-204ENST00000372922 USP34Q70CQ2 3546 aa4.99□□□□□ -1.61
TRERF1-204ENST00000372922 FRYLO94915 3013 aa4.99□□□□□ -1.61
TRERF1-204ENST00000372922 ASH1LQ9NR48 2969 aaKnown RBP4.99□□□□□ -1.61
TRERF1-204ENST00000372922 TNRC18O15417 2968 aaPredicted RBP4.98□□□□□ -1.61
TRERF1-204ENST00000372922 NBEAQ8NFP9 2946 aa4.98□□□□□ -1.61
TRERF1-204ENST00000372922 NIPBLQ6KC79 2804 aaeCLIP4.98□□□□□ -1.61
TRERF1-204ENST00000372922 MYO15AQ9UKN7 3530 aa4.94□□□□□ -1.62
TRERF1-204ENST00000372922 CELSR2Q9HCU4 2923 aa4.94□□□□□ -1.62
TRERF1-204ENST00000372922 EYSQ5T1H1 3165 aa4.93□□□□□ -1.62
TRERF1-204ENST00000372922 KRTAP12-2P59991 146 aa4.93□□□□□ -1.62
TRERF1-204ENST00000372922 SPTBN5Q9NRC6 3674 aaKnown RBP4.93□□□□□ -1.62
TRERF1-204ENST00000372922 ADGRG4Q8IZF6 3080 aa4.91□□□□□ -1.62
TRERF1-204ENST00000372922 TENM1Q9UKZ4 2725 aa4.9□□□□□ -1.62
TRERF1-204ENST00000372922 DCHS2Q6V1P9 2916 aa4.88□□□□□ -1.63
TRERF1-204ENST00000372922 ZZEF1O43149 2961 aa4.88□□□□□ -1.63
TRERF1-204ENST00000372922 BOD1L1Q8NFC6 3051 aa4.88□□□□□ -1.63
TRERF1-204ENST00000372922 CRCT1Q9UGL9 99 aa4.88□□□□□ -1.63
TRERF1-204ENST00000372922 WDFY3Q8IZQ1 3526 aa4.84□□□□□ -1.63
TRERF1-204ENST00000372922 INE1O15225 51 aa4.82□□□□□ -1.64
TRERF1-204ENST00000372922 TENM2Q9NT68 2774 aa4.82□□□□□ -1.64
TRERF1-204ENST00000372922 KRTAP13-4Q3LI77 160 aa4.81□□□□□ -1.64
TRERF1-204ENST00000372922 ASPMQ8IZT6 3477 aa4.81□□□□□ -1.64
TRERF1-204ENST00000372922 TENM3Q9P273 2699 aa4.79□□□□□ -1.64
TRERF1-204ENST00000372922 NF1P21359 2839 aa4.79□□□□□ -1.64
TRERF1-204ENST00000372922 KRTAP15-1Q3LI76 137 aa4.77□□□□□ -1.65
TRERF1-204ENST00000372922 TGP01266 2768 aa4.76□□□□□ -1.65
TRERF1-204ENST00000372922 ZANQ9Y493 2812 aa4.75□□□□□ -1.65
TRERF1-204ENST00000372922 HRNRQ86YZ3 2850 aaPredicted RBP4.73□□□□□ -1.65
TRERF1-204ENST00000372922 CELSR1Q9NYQ6 3014 aa4.73□□□□□ -1.65
TRERF1-204ENST00000372922 KRTAP12-1P59990 96 aa4.73□□□□□ -1.65
TRERF1-204ENST00000372922 LOC400499M0QZD8 3231 aa4.7□□□□□ -1.66
TRERF1-204ENST00000372922 DCHS1Q96JQ0 3298 aa4.69□□□□□ -1.66
TRERF1-204ENST00000372922 FBN2P35556 2912 aa4.68□□□□□ -1.66
TRERF1-204ENST00000372922 MUC3AQ02505 3323 aa4.66□□□□□ -1.66
TRERF1-204ENST00000372922 DMXL1Q9Y485 3027 aa4.65□□□□□ -1.66
TRERF1-204ENST00000372922 KRTAP3-1Q9BYR8 98 aa4.63□□□□□ -1.67
TRERF1-204ENST00000372922 DMDP11532 3685 aa4.61□□□□□ -1.67
TRERF1-204ENST00000372922 LAMA5O15230 3695 aa4.6□□□□□ -1.67
TRERF1-204ENST00000372922 PKD1L1Q8TDX9 2849 aa4.6□□□□□ -1.67
TRERF1-204ENST00000372922 MXRA5Q9NR99 2828 aa4.6□□□□□ -1.67
TRERF1-204ENST00000372922 PDZD2O15018 2839 aa4.59□□□□□ -1.67
TRERF1-204ENST00000372922 ZFHX4Q86UP3 3567 aa4.59□□□□□ -1.67
TRERF1-204ENST00000372922 LORP23490 312 aaPredicted RBP4.55□□□□□ -1.68
TRERF1-204ENST00000372922 CSMD1Q96PZ7 3565 aa4.55□□□□□ -1.68
TRERF1-204ENST00000372922 RELNP78509 3460 aa4.55□□□□□ -1.68
TRERF1-204ENST00000372922 VWFP04275 2813 aa4.54□□□□□ -1.68
TRERF1-204ENST00000372922 NBPF19A0A087WUL8 3843 aa4.52□□□□□ -1.69
TRERF1-204ENST00000372922 KRTAP10-6P60371 365 aaPredicted RBP4.51□□□□□ -1.69
TRERF1-204ENST00000372922 KRTAP23-1A1A580 65 aa4.49□□□□□ -1.69
TRERF1-204ENST00000372922 MT1HL1P0DM35 61 aa4.49□□□□□ -1.69
TRERF1-204ENST00000372922 ZFHX3Q15911 3703 aa4.47□□□□□ -1.69
TRERF1-204ENST00000372922 KRTAP10-12P60413 245 aa4.46□□□□□ -1.7
TRERF1-204ENST00000372922 CUBNO60494 3623 aa4.44□□□□□ -1.7
TRERF1-204ENST00000372922 SMG1Q96Q15 3661 aaKnown RBP4.37□□□□□ -1.71
TRERF1-204ENST00000372922 SVEP1Q4LDE5 3571 aa4.35□□□□□ -1.71
TRERF1-204ENST00000372922 SPENQ96T58 3664 aaKnown RBP4.35□□□□□ -1.71
TRERF1-204ENST00000372922 KRTAP3-3Q9BYR6 98 aa4.34□□□□□ -1.72
TRERF1-204ENST00000372922 KRTAP3-2Q9BYR7 98 aa4.33□□□□□ -1.72
TRERF1-204ENST00000372922 KRTAP4-5Q9BYR2 181 aa4.32□□□□□ -1.72
TRERF1-204ENST00000372922 ANK3Q12955 4377 aaKnown RBP4.32□□□□□ -1.72
TRERF1-204ENST00000372922 KRTAP12-3P60328 96 aa4.31□□□□□ -1.72
TRERF1-204ENST00000372922 MEGF8Q7Z7M0 2845 aa4.3□□□□□ -1.72
TRERF1-204ENST00000372922 FBN3Q75N90 2809 aa4.29□□□□□ -1.72
TRERF1-204ENST00000372922 KRTAP10-4P60372 401 aaPredicted RBP4.29□□□□□ -1.72
TRERF1-204ENST00000372922 OTOGQ6ZRI0 2925 aa4.27□□□□□ -1.73
TRERF1-204ENST00000372922 KRTAP10-5P60370 271 aa4.27□□□□□ -1.73
TRERF1-204ENST00000372922 SRRM2Q9UQ35 2752 aaKnown RBP4.25□□□□□ -1.73
TRERF1-204ENST00000372922 FBN1P35555 2871 aaKnown RBP4.25□□□□□ -1.73
TRERF1-204ENST00000372922 ALMS1Q8TCU4 4167 aa4.24□□□□□ -1.73
TRERF1-204ENST00000372922 CSMD2Q7Z408 3487 aa4.24□□□□□ -1.73
TRERF1-204ENST00000372922 COL7A1Q02388 2944 aa4.23□□□□□ -1.73
TRERF1-204ENST00000372922 LCE3AQ5TA76 89 aa4.22□□□□□ -1.73
TRERF1-204ENST00000372922 KRTAP8-1Q8IUC2 63 aa4.18□□□□□ -1.74
TRERF1-204ENST00000372922 HUWE1Q7Z6Z7 4374 aaKnown RBP4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms