RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TRANK1O15050 2925 aa6.66□□□□□ -1.34
SDC3-201ENST00000336798 KALRNO60229 2985 aa6.66□□□□□ -1.34
SDC3-201ENST00000336798 DNAH14Q0VDD8 3507 aa6.65□□□□□ -1.34
SDC3-201ENST00000336798 PP632Q6XCG6 107 aa6.65□□□□□ -1.34
SDC3-201ENST00000336798 DMXL2Q8TDJ6 3036 aa6.62□□□□□ -1.35
SDC3-201ENST00000336798 COL6A3P12111 3177 aa6.62□□□□□ -1.35
SDC3-201ENST00000336798 CFAP47Q6ZTR5 3102 aa6.61□□□□□ -1.35
SDC3-201ENST00000336798 KRTAP1-4P0C5Y4 121 aa6.61□□□□□ -1.35
SDC3-201ENST00000336798 KMT2BQ9UMN6 2715 aaPredicted RBP6.61□□□□□ -1.35
SDC3-201ENST00000336798 APCP25054 2843 aa6.6□□□□□ -1.35
SDC3-201ENST00000336798 TACC2O95359 2948 aa6.58□□□□□ -1.36
SDC3-201ENST00000336798 ASH1LQ9NR48 2969 aaKnown RBP6.57□□□□□ -1.36
SDC3-201ENST00000336798 HIVEP1P15822 2718 aa6.56□□□□□ -1.36
SDC3-201ENST00000336798 ITPR1Q14643 2758 aa6.56□□□□□ -1.36
SDC3-201ENST00000336798 SZT2Q5T011 3432 aa6.56□□□□□ -1.36
SDC3-201ENST00000336798 PRO2289Q9P1D8 64 aa6.54□□□□□ -1.36
SDC3-201ENST00000336798 UTP20O75691 2785 aaKnown RBP6.53□□□□□ -1.36
SDC3-201ENST00000336798 LRBAP50851 2863 aa6.53□□□□□ -1.36
SDC3-201ENST00000336798 VCANP13611 3396 aa6.51□□□□□ -1.37
SDC3-201ENST00000336798 TPRXLQ17RH7 258 aa6.5□□□□□ -1.37
SDC3-201ENST00000336798 TENM4Q6N022 2769 aa6.49□□□□□ -1.37
SDC3-201ENST00000336798 FLNCQ14315 2725 aa6.49□□□□□ -1.37
SDC3-201ENST00000336798 LAMA1P25391 3075 aa6.46□□□□□ -1.38
SDC3-201ENST00000336798 ATMQ13315 3056 aa6.46□□□□□ -1.38
SDC3-201ENST00000336798 SPEGQ15772 3267 aa6.45□□□□□ -1.38
SDC3-201ENST00000336798 COL12A1Q99715 3063 aa6.43□□□□□ -1.38
SDC3-201ENST00000336798 BOD1L1Q8NFC6 3051 aa6.41□□□□□ -1.38
SDC3-201ENST00000336798 KRTAP13-3Q3SY46 172 aa6.41□□□□□ -1.38
SDC3-201ENST00000336798 SPTBN5Q9NRC6 3674 aaKnown RBP6.41□□□□□ -1.38
SDC3-201ENST00000336798 FRYLO94915 3013 aa6.4□□□□□ -1.38
SDC3-201ENST00000336798 ADGRG4Q8IZF6 3080 aa6.33□□□□□ -1.4
SDC3-201ENST00000336798 CELSR2Q9HCU4 2923 aa6.3□□□□□ -1.4
SDC3-201ENST00000336798 KRTAP12-2P59991 146 aa6.29□□□□□ -1.4
SDC3-201ENST00000336798 ZZEF1O43149 2961 aa6.28□□□□□ -1.4
SDC3-201ENST00000336798 USP34Q70CQ2 3546 aa6.27□□□□□ -1.41
SDC3-201ENST00000336798 NBEAQ8NFP9 2946 aa6.27□□□□□ -1.41
SDC3-201ENST00000336798 NIPBLQ6KC79 2804 aaeCLIP6.24□□□□□ -1.41
SDC3-201ENST00000336798 TNRC18O15417 2968 aaPredicted RBP6.23□□□□□ -1.41
SDC3-201ENST00000336798 EYSQ5T1H1 3165 aa6.23□□□□□ -1.41
SDC3-201ENST00000336798 DCHS2Q6V1P9 2916 aa6.2□□□□□ -1.42
SDC3-201ENST00000336798 TENM3Q9P273 2699 aa6.2□□□□□ -1.42
SDC3-201ENST00000336798 KRTAP15-1Q3LI76 137 aa6.17□□□□□ -1.42
SDC3-201ENST00000336798 TENM2Q9NT68 2774 aa6.16□□□□□ -1.42
SDC3-201ENST00000336798 TENM1Q9UKZ4 2725 aa6.15□□□□□ -1.42
SDC3-201ENST00000336798 KRTAP13-4Q3LI77 160 aa6.11□□□□□ -1.43
SDC3-201ENST00000336798 ZANQ9Y493 2812 aa6.09□□□□□ -1.43
SDC3-201ENST00000336798 NF1P21359 2839 aa6.08□□□□□ -1.44
SDC3-201ENST00000336798 TGP01266 2768 aa6.07□□□□□ -1.44
SDC3-201ENST00000336798 KRTAP12-1P59990 96 aa6.06□□□□□ -1.44
SDC3-201ENST00000336798 MYO15AQ9UKN7 3530 aa6.06□□□□□ -1.44
SDC3-201ENST00000336798 CRCT1Q9UGL9 99 aa6.06□□□□□ -1.44
SDC3-201ENST00000336798 CELSR1Q9NYQ6 3014 aa6.02□□□□□ -1.45
SDC3-201ENST00000336798 WDFY3Q8IZQ1 3526 aa6.01□□□□□ -1.45
SDC3-201ENST00000336798 ASPMQ8IZT6 3477 aa6□□□□□ -1.45
SDC3-201ENST00000336798 INE1O15225 51 aa5.99□□□□□ -1.45
SDC3-201ENST00000336798 PKD1L1Q8TDX9 2849 aa5.99□□□□□ -1.45
SDC3-201ENST00000336798 DMXL1Q9Y485 3027 aa5.99□□□□□ -1.45
SDC3-201ENST00000336798 FBN2P35556 2912 aa5.97□□□□□ -1.45
SDC3-201ENST00000336798 LOC400499M0QZD8 3231 aa5.97□□□□□ -1.45
SDC3-201ENST00000336798 KRTAP3-1Q9BYR8 98 aa5.94□□□□□ -1.46
SDC3-201ENST00000336798 NBPF19A0A087WUL8 3843 aa5.91□□□□□ -1.46
SDC3-201ENST00000336798 ZFHX4Q86UP3 3567 aa5.91□□□□□ -1.46
SDC3-201ENST00000336798 HRNRQ86YZ3 2850 aaPredicted RBP5.91□□□□□ -1.46
SDC3-201ENST00000336798 VWFP04275 2813 aa5.9□□□□□ -1.46
SDC3-201ENST00000336798 DCHS1Q96JQ0 3298 aa5.89□□□□□ -1.47
SDC3-201ENST00000336798 RELNP78509 3460 aa5.85□□□□□ -1.47
SDC3-201ENST00000336798 PDZD2O15018 2839 aa5.84□□□□□ -1.47
SDC3-201ENST00000336798 MXRA5Q9NR99 2828 aa5.8□□□□□ -1.48
SDC3-201ENST00000336798 CSMD1Q96PZ7 3565 aa5.78□□□□□ -1.48
SDC3-201ENST00000336798 SRRM2Q9UQ35 2752 aaKnown RBP5.75□□□□□ -1.49
SDC3-201ENST00000336798 KRTAP10-6P60371 365 aaPredicted RBP5.75□□□□□ -1.49
SDC3-201ENST00000336798 DMDP11532 3685 aa5.73□□□□□ -1.49
SDC3-201ENST00000336798 KRTAP10-12P60413 245 aa5.71□□□□□ -1.5
SDC3-201ENST00000336798 LAMA5O15230 3695 aa5.7□□□□□ -1.5
SDC3-201ENST00000336798 MUC3AQ02505 3323 aa5.68□□□□□ -1.5
SDC3-201ENST00000336798 ZFHX3Q15911 3703 aa5.61□□□□□ -1.51
SDC3-201ENST00000336798 KRTAP4-5Q9BYR2 181 aa5.61□□□□□ -1.51
SDC3-201ENST00000336798 MT1HL1P0DM35 61 aa5.59□□□□□ -1.52
SDC3-201ENST00000336798 FBN1P35555 2871 aaKnown RBP5.58□□□□□ -1.52
SDC3-201ENST00000336798 ANK3Q12955 4377 aaKnown RBP5.55□□□□□ -1.52
SDC3-201ENST00000336798 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
SDC3-201ENST00000336798 SMG1Q96Q15 3661 aaKnown RBP5.51□□□□□ -1.53
SDC3-201ENST00000336798 KRTAP3-3Q9BYR6 98 aa5.51□□□□□ -1.53
SDC3-201ENST00000336798 LCE3AQ5TA76 89 aa5.51□□□□□ -1.53
SDC3-201ENST00000336798 KRTAP3-2Q9BYR7 98 aa5.5□□□□□ -1.53
SDC3-201ENST00000336798 CUBNO60494 3623 aa5.46□□□□□ -1.54
SDC3-201ENST00000336798 MEGF8Q7Z7M0 2845 aa5.46□□□□□ -1.54
SDC3-201ENST00000336798 SVEP1Q4LDE5 3571 aa5.46□□□□□ -1.54
SDC3-201ENST00000336798 FBN3Q75N90 2809 aa5.45□□□□□ -1.54
SDC3-201ENST00000336798 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
SDC3-201ENST00000336798 CSMD2Q7Z408 3487 aa5.43□□□□□ -1.54
SDC3-201ENST00000336798 SPENQ96T58 3664 aaKnown RBP5.42□□□□□ -1.54
SDC3-201ENST00000336798 LORP23490 312 aaPredicted RBP5.39□□□□□ -1.55
SDC3-201ENST00000336798 COL7A1Q02388 2944 aa5.38□□□□□ -1.55
SDC3-201ENST00000336798 KRTAP23-1A1A580 65 aa5.38□□□□□ -1.55
SDC3-201ENST00000336798 OTOGQ6ZRI0 2925 aa5.37□□□□□ -1.55
SDC3-201ENST00000336798 ALMS1Q8TCU4 4167 aa5.36□□□□□ -1.55
SDC3-201ENST00000336798 KRTAP8-1Q8IUC2 63 aa5.36□□□□□ -1.55
SDC3-201ENST00000336798 HUWE1Q7Z6Z7 4374 aaKnown RBP5.35□□□□□ -1.55
SDC3-201ENST00000336798 TRRAPQ9Y4A5 3859 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms