RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 SAMD9Q5K651 1589 aa0.61□□□□□ -2.31
VPS13A-211ENST00000484581 IGF2RP11717 2491 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 NAV2Q8IVL1 2488 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 I3L3M4 83 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 NDUFB1O75438 58 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 IFI27P40305 119 aaPredicted RBP0.6□□□□□ -2.31
VPS13A-211ENST00000484581 RPL38P63173 70 aaKnown RBP0.6□□□□□ -2.31
VPS13A-211ENST00000484581 CLIP1P30622 1438 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 SETBP1Q9Y6X0 1596 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 NCOA2Q15596 1464 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 RGPD4Q7Z3J3 1758 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 MYH4Q9Y623 1939 aa0.6□□□□□ -2.31
VPS13A-211ENST00000484581 TULP4Q9NRJ4 1543 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 CEP350Q5VT06 3117 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 XRN1Q8IZH2 1706 aaKnown RBP0.59□□□□□ -2.31
VPS13A-211ENST00000484581 PIEZO1Q92508 2521 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 IFI6P09912 130 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 COX7BP24311 80 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 NREPQ16612 68 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 DEFB123Q8N688 67 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 USMG5Q96IX5 58 aa0.59□□□□□ -2.31
VPS13A-211ENST00000484581 ZNF292O60281 2723 aa0.59□□□□□ -2.32
VPS13A-211ENST00000484581 LRRC9Q6ZRR7 1453 aa0.59□□□□□ -2.32
VPS13A-211ENST00000484581 C5P01031 1676 aa0.59□□□□□ -2.32
VPS13A-211ENST00000484581 URB2Q14146 1524 aaKnown RBP0.59□□□□□ -2.32
VPS13A-211ENST00000484581 UGGT2Q9NYU1 1516 aa0.59□□□□□ -2.32
VPS13A-211ENST00000484581 RGPD3A6NKT7 1758 aaPredicted RBP0.58□□□□□ -2.32
VPS13A-211ENST00000484581 BPTFQ12830 3046 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 TARBP1Q13395 1621 aaKnown RBP0.58□□□□□ -2.32
VPS13A-211ENST00000484581 SMIM31A0A1B0GVY4 71 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 HEPN1Q6WQI6 88 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 TRANK1O15050 2925 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 OTOGQ6ZRI0 2925 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 CCDC141Q6ZP82 1450 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 DUOX2Q9NRD8 1548 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 A0A0G2JMZ2 1700 aa0.58□□□□□ -2.32
VPS13A-211ENST00000484581 CFAP74Q9C0B2 1584 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 TEP1Q99973 2627 aaKnown RBP0.57□□□□□ -2.32
VPS13A-211ENST00000484581 KIAA0556O60303 1618 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 NHSL1Q5SYE7 1610 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 CCDC88BA6NC98 1476 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 NKTRP30414 1462 aaKnown RBP0.57□□□□□ -2.32
VPS13A-211ENST00000484581 COX8AP10176 69 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 DEFB121Q5J5C9 76 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 ANKRD36A6QL64 1941 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 UBR1Q8IWV7 1749 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 SLIT1O75093 1534 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 DNMBPQ6XZF7 1577 aa0.57□□□□□ -2.32
VPS13A-211ENST00000484581 TMEM131LA2VDJ0 1609 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 MAST4O15021 2626 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 CPSF4LA6NMK7 179 aaKnown RBP0.56□□□□□ -2.32
VPS13A-211ENST00000484581 K7EQZ3 153 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 COX6B1P14854 86 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 S100ZQ8WXG8 99 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 APLNQ9ULZ1 77 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 SHPRHQ149N8 1683 aa0.56□□□□□ -2.32
VPS13A-211ENST00000484581 CHD8Q9HCK8 2581 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 PPLO60437 1756 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 PTPN13Q12923 2485 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 ABCA8O94911 1581 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 NDUFA4O00483 81 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 PIK3C2BO00750 1634 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 USP32Q8NFA0 1604 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 ALKQ9UM73 1620 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 TNRC18O15417 2968 aaPredicted RBP0.55□□□□□ -2.32
VPS13A-211ENST00000484581 UBR4Q5T4S7 5183 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 PAPPA2Q9BXP8 1791 aa0.55□□□□□ -2.32
VPS13A-211ENST00000484581 ANKRD17O75179 2603 aaKnown RBP0.54□□□□□ -2.32
VPS13A-211ENST00000484581 SETXQ7Z333 2677 aaKnown RBP0.54□□□□□ -2.32
VPS13A-211ENST00000484581 CEP170BQ9Y4F5 1589 aaPredicted RBP0.54□□□□□ -2.32
VPS13A-211ENST00000484581 SYNE1Q8NF91 8797 aaKnown RBP0.54□□□□□ -2.32
VPS13A-211ENST00000484581 SYNE2Q8WXH0 6885 aaKnown RBP0.54□□□□□ -2.32
VPS13A-211ENST00000484581 IQGAP3Q86VI3 1631 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 PCNTO95613 3336 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 ATXN8Q156A1 80 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 KLK9Q2XQG4 91 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 Q5VSD8 79 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 MRPL34Q9BQ48 92 aaKnown RBP0.54□□□□□ -2.32
VPS13A-211ENST00000484581 CRYBG1Q9Y4K1 1723 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 PKDREJQ9NTG1 2253 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 PTPRQQ9UMZ3 2332 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 LMTK2Q8IWU2 1503 aa0.54□□□□□ -2.32
VPS13A-211ENST00000484581 A0A0C4DFX4 3053 aa0.53□□□□□ -2.32
VPS13A-211ENST00000484581 ADAMTS12P58397 1594 aa0.53□□□□□ -2.32
VPS13A-211ENST00000484581 LRRIQ1Q96JM4 1722 aa0.53□□□□□ -2.32
VPS13A-211ENST00000484581 SPRR1BP22528 89 aa0.53□□□□□ -2.32
VPS13A-211ENST00000484581 DEFB105AQ8NG35 78 aa0.53□□□□□ -2.32
VPS13A-211ENST00000484581 ANKRD11Q6UB99 2663 aaPredicted RBP0.53□□□□□ -2.32
VPS13A-211ENST00000484581 ABCA2Q9BZC7 2435 aa0.53□□□□□ -2.33
VPS13A-211ENST00000484581 ZFYVE26Q68DK2 2539 aa0.53□□□□□ -2.33
VPS13A-211ENST00000484581 SPTBN4Q9H254 2564 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 CHD6Q8TD26 2715 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 AKAP6Q13023 2319 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 NCOR1O75376 2440 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 CCL22O00626 93 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 DEFB109BQ30KR1 87 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 ENHOQ6UWT2 76 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 PCLOQ9Y6V0 5065 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 MYO5CQ9NQX4 1742 aa0.52□□□□□ -2.33
VPS13A-211ENST00000484581 LRP1Q07954 4544 aaKnown RBP0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms