RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 AEBP2Q6ZN18 517 aaPredicted RBP25.19■■□□□ 1.62
VPS13A-211ENST00000484581 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
VPS13A-211ENST00000484581 SENP3Q9H4L4 574 aaPredicted RBP21.53■■□□□ 1.04
VPS13A-211ENST00000484581 PHF23Q9BUL5 403 aaPredicted RBP21.19■□□□□ 0.98
VPS13A-211ENST00000484581 FOXD1Q16676 465 aa20.12■□□□□ 0.81
VPS13A-211ENST00000484581 POTEDQ86YR6 584 aa19.16■□□□□ 0.66
VPS13A-211ENST00000484581 MSH5O43196 834 aa18.97■□□□□ 0.63
VPS13A-211ENST00000484581 PIAS4Q8N2W9 510 aaPredicted RBP18.71■□□□□ 0.59
VPS13A-211ENST00000484581 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
VPS13A-211ENST00000484581 PPP6R1Q9UPN7 881 aa18.53■□□□□ 0.56
VPS13A-211ENST00000484581 ADRA2BP18089 450 aa18.44■□□□□ 0.54
VPS13A-211ENST00000484581 MAPK8IP2Q13387 824 aaPredicted RBP17.05■□□□□ 0.32
VPS13A-211ENST00000484581 DMRT2Q9Y5R5 561 aa17.02■□□□□ 0.32
VPS13A-211ENST00000484581 SCAF1Q9H7N4 1312 aaKnown RBP16.85■□□□□ 0.29
VPS13A-211ENST00000484581 CACNB1Q02641 598 aaPredicted RBP16.5■□□□□ 0.23
VPS13A-211ENST00000484581 DCAF8L1A6NGE4 600 aa16.33■□□□□ 0.2
VPS13A-211ENST00000484581 PPP4R3CPQ6ZMV5 832 aa16.32■□□□□ 0.2
VPS13A-211ENST00000484581 HOXD11P31277 338 aaPredicted RBP16.24■□□□□ 0.19
VPS13A-211ENST00000484581 RNF39Q9H2S5 420 aa16.16■□□□□ 0.18
VPS13A-211ENST00000484581 CNKSR2Q8WXI2 1034 aa16.06■□□□□ 0.16
VPS13A-211ENST00000484581 RNF216Q9NWF9 866 aaPredicted RBP16.02■□□□□ 0.16
VPS13A-211ENST00000484581 C1QBPQ07021 282 aaKnown RBP15.89■□□□□ 0.13
VPS13A-211ENST00000484581 NCBP3Q53F19 620 aaKnown RBP15.78■□□□□ 0.12
VPS13A-211ENST00000484581 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
VPS13A-211ENST00000484581 NPM3O75607 178 aaKnown RBP15.47■□□□□ 0.07
VPS13A-211ENST00000484581 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.46■□□□□ 0.071e-6■□□□□ 8.7
VPS13A-211ENST00000484581 KCNA4P22459 653 aa15.26■□□□□ 0.03
VPS13A-211ENST00000484581 U3KPZ7 1027 aaPredicted RBP15.12■□□□□ 0.01
VPS13A-211ENST00000484581 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
VPS13A-211ENST00000484581 DSG3P32926 999 aa15□□□□□ -0.01
VPS13A-211ENST00000484581 CAPN15O75808 1086 aa14.99□□□□□ -0.01
VPS13A-211ENST00000484581 POTEHQ6S545 545 aa14.94□□□□□ -0.02
VPS13A-211ENST00000484581 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
VPS13A-211ENST00000484581 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
VPS13A-211ENST00000484581 APLP2Q06481 763 aa14.63□□□□□ -0.07
VPS13A-211ENST00000484581 ABCB7O75027 752 aa14.62□□□□□ -0.07
VPS13A-211ENST00000484581 ZNF219Q9P2Y4 722 aaPredicted RBP14.62□□□□□ -0.07
VPS13A-211ENST00000484581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.53□□□□□ -0.08
VPS13A-211ENST00000484581 HNRNPUL2Q1KMD3 747 aaKnown RBP14.53□□□□□ -0.08
VPS13A-211ENST00000484581 SLC4A1APQ9BWU0 796 aaKnown RBP14.47□□□□□ -0.09
VPS13A-211ENST00000484581 SAMD1Q6SPF0 538 aaPredicted RBP14.44□□□□□ -0.1
VPS13A-211ENST00000484581 MYCNP04198 464 aaPredicted RBP14.33□□□□□ -0.12
VPS13A-211ENST00000484581 RBM42Q9BTD8 480 aaKnown RBP14.31□□□□□ -0.12
VPS13A-211ENST00000484581 FOXD4L1Q9NU39 408 aa14.23□□□□□ -0.13
VPS13A-211ENST00000484581 POLA2Q14181 598 aa14.18□□□□□ -0.14
VPS13A-211ENST00000484581 CHRDL2Q6WN34 429 aa14.16□□□□□ -0.14
VPS13A-211ENST00000484581 ZBTB22O15209 634 aa13.98□□□□□ -0.17
VPS13A-211ENST00000484581 ATF5Q9Y2D1 282 aaPredicted RBP13.94□□□□□ -0.18
VPS13A-211ENST00000484581 AKT1S1Q96B36 256 aa13.9□□□□□ -0.18
VPS13A-211ENST00000484581 ZBTB12Q9Y330 459 aaPredicted RBP13.86□□□□□ -0.19
VPS13A-211ENST00000484581 SP7Q8TDD2 431 aaPredicted RBP13.83□□□□□ -0.2
VPS13A-211ENST00000484581 ATXN8OSP0DMR3 200 aa13.8□□□□□ -0.2
VPS13A-211ENST00000484581 REM2Q8IYK8 340 aaPredicted RBP13.78□□□□□ -0.2
VPS13A-211ENST00000484581 OSCARQ8IYS5 282 aa13.77□□□□□ -0.21
VPS13A-211ENST00000484581 PIP4P2Q8N4L2 257 aa13.74□□□□□ -0.21
VPS13A-211ENST00000484581 PITPNM1O00562 1244 aa13.65□□□□□ -0.22
VPS13A-211ENST00000484581 FXR2P51116 673 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS13A-211ENST00000484581 HAX1O00165 279 aa13.59□□□□□ -0.23
VPS13A-211ENST00000484581 FBLN2P98095 1184 aa13.5□□□□□ -0.25
VPS13A-211ENST00000484581 CSRNP3Q8WYN3 585 aa13.47□□□□□ -0.25
VPS13A-211ENST00000484581 EVX2Q03828 476 aa13.41□□□□□ -0.26
VPS13A-211ENST00000484581 SPDYE2BA6NHP3 402 aa13.4□□□□□ -0.26
VPS13A-211ENST00000484581 SPDYE6P0CI01 402 aa13.4□□□□□ -0.26
VPS13A-211ENST00000484581 SPDYE2Q495Y8 402 aa13.4□□□□□ -0.26
VPS13A-211ENST00000484581 EHMT2Q96KQ7 1210 aa13.4□□□□□ -0.26
VPS13A-211ENST00000484581 MKRN4PQ13434 485 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-211ENST00000484581 PRKAR2AP13861 404 aaKnown RBP13.28□□□□□ -0.28
VPS13A-211ENST00000484581 SPDYE1Q8NFV5 336 aaPredicted RBP13.26□□□□□ -0.29
VPS13A-211ENST00000484581 CLEC11AQ9Y240 323 aa13.25□□□□□ -0.29
VPS13A-211ENST00000484581 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
VPS13A-211ENST00000484581 SSUH2Q9Y2M2 353 aa13.2□□□□□ -0.3
VPS13A-211ENST00000484581 C19orf67A6NJJ6 358 aa13.18□□□□□ -0.3
VPS13A-211ENST00000484581 GABBR2O75899 941 aa13.08□□□□□ -0.32
VPS13A-211ENST00000484581 CHADLQ6NUI6 762 aa13.06□□□□□ -0.32
VPS13A-211ENST00000484581 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS13A-211ENST00000484581 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
VPS13A-211ENST00000484581 LHX8Q68G74 356 aa12.96□□□□□ -0.33
VPS13A-211ENST00000484581 CD44P16070 742 aaKnown RBP12.84□□□□□ -0.35
VPS13A-211ENST00000484581 FARP1Q9Y4F1 1045 aaPredicted RBP12.82□□□□□ -0.36
VPS13A-211ENST00000484581 POTEIP0CG38 1075 aa12.81□□□□□ -0.36
VPS13A-211ENST00000484581 SPDYE4A6NLX3 237 aa12.8□□□□□ -0.36
VPS13A-211ENST00000484581 CLCN6P51797 869 aa12.72□□□□□ -0.37
VPS13A-211ENST00000484581 STAG3Q9UJ98 1225 aa12.71□□□□□ -0.37
VPS13A-211ENST00000484581 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
VPS13A-211ENST00000484581 DCBLD2Q96PD2 775 aa12.63□□□□□ -0.39
VPS13A-211ENST00000484581 ZRANB1Q9UGI0 708 aa12.6□□□□□ -0.39
VPS13A-211ENST00000484581 CREBZFQ9NS37 354 aa12.59□□□□□ -0.39
VPS13A-211ENST00000484581 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-211ENST00000484581 PLSCR2Q9NRY7 297 aa12.44□□□□□ -0.42
VPS13A-211ENST00000484581 PROM2Q8N271 834 aa12.41□□□□□ -0.42
VPS13A-211ENST00000484581 OTUD5Q96G74 571 aa12.41□□□□□ -0.42
VPS13A-211ENST00000484581 PAK3O75914 559 aaPredicted RBP12.4□□□□□ -0.42
VPS13A-211ENST00000484581 PHF12Q96QT6 1004 aa12.4□□□□□ -0.42
VPS13A-211ENST00000484581 POTEB2H3BUK9 544 aa12.38□□□□□ -0.43
VPS13A-211ENST00000484581 NPM1P06748 294 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS13A-211ENST00000484581 MNX1P50219 401 aaPredicted RBP12.33□□□□□ -0.44
VPS13A-211ENST00000484581 PELP1Q8IZL8 1130 aaKnown RBP12.3□□□□□ -0.44
VPS13A-211ENST00000484581 PLEKHG5O94827 1062 aa12.27□□□□□ -0.45
VPS13A-211ENST00000484581 FKBP8Q14318 412 aa12.26□□□□□ -0.45
VPS13A-211ENST00000484581 MIER1Q8N108 512 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms