RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 SCN7AQ01118 1682 aa-0.15□□□□□ -2.43
NPAS3-208ENST00000550662 MAP1BP46821 2468 aaKnown RBP-0.15□□□□□ -2.43
NPAS3-208ENST00000550662 CGREF1Q99674 301 aa-0.16□□□□□ -2.44
NPAS3-208ENST00000550662 ATRQ13535 2644 aa-0.16□□□□□ -2.44
NPAS3-208ENST00000550662 TENM2Q9NT68 2774 aa-0.16□□□□□ -2.44
NPAS3-208ENST00000550662 SPTA1P02549 2419 aa-0.17□□□□□ -2.44
NPAS3-208ENST00000550662 KRTAP6-1Q3LI64 71 aa-0.17□□□□□ -2.44
NPAS3-208ENST00000550662 TOPAZ1Q8N9V7 1692 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 ZFYVE16Q7Z3T8 1539 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 ZANQ9Y493 2812 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 LINC00846Q9NV44 126 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 C1orf167Q5SNV9 1468 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 FAT1Q14517 4588 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 CHD1O14646 1710 aa-0.18□□□□□ -2.44
NPAS3-208ENST00000550662 PEG3Q9GZU2 1588 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 APC2O95996 2303 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 PKHD1P08F94 4074 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 hADV29S1A0JD25 119 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 SPRR1BP22528 89 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 SEC11AP67812 179 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 CSPG4Q6UVK1 2322 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 WNK1Q9H4A3 2382 aa-0.19□□□□□ -2.44
NPAS3-208ENST00000550662 TSC2P49815 1807 aa-0.2□□□□□ -2.44
NPAS3-208ENST00000550662 HERC1Q15751 4861 aa-0.2□□□□□ -2.44
NPAS3-208ENST00000550662 LINC00959A0A1B0GUT2 108 aa-0.2□□□□□ -2.44
NPAS3-208ENST00000550662 HERC2O95714 4834 aa-0.2□□□□□ -2.44
NPAS3-208ENST00000550662 FAT3Q8TDW7 4589 aa-0.2□□□□□ -2.44
NPAS3-208ENST00000550662 COL6A3P12111 3177 aa-0.2□□□□□ -2.44
NPAS3-208ENST00000550662 NUP188Q5SRE5 1749 aa-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 MAP1AP78559 2803 aaPredicted RBP-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 SETXQ7Z333 2677 aaKnown RBP-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 SPRR2DP22532 72 aa-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 TCEAL7Q9BRU2 100 aa-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 SETBP1Q9Y6X0 1596 aa-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 CHD8Q9HCK8 2581 aa-0.21□□□□□ -2.44
NPAS3-208ENST00000550662 FLGP20930 4061 aaPredicted RBP-0.22□□□□□ -2.44
NPAS3-208ENST00000550662 ABCC5O15440 1437 aa-0.22□□□□□ -2.45
NPAS3-208ENST00000550662 STARD9Q9P2P6 4700 aa-0.23□□□□□ -2.45
NPAS3-208ENST00000550662 ABCA3Q99758 1704 aa-0.23□□□□□ -2.45
NPAS3-208ENST00000550662 HIVEP1P15822 2718 aa-0.23□□□□□ -2.45
NPAS3-208ENST00000550662 ACANP16112 2415 aa-0.23□□□□□ -2.45
NPAS3-208ENST00000550662 SPTBN4Q9H254 2564 aa-0.23□□□□□ -2.45
NPAS3-208ENST00000550662 SRRM2Q9UQ35 2752 aaKnown RBP-0.23□□□□□ -2.45
NPAS3-208ENST00000550662 EP300Q09472 2414 aaPredicted RBP-0.24□□□□□ -2.45
NPAS3-208ENST00000550662 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.24□□□□□ -2.45
NPAS3-208ENST00000550662 NDUFC1O43677 76 aa-0.24□□□□□ -2.45
NPAS3-208ENST00000550662 PRM1P04553 51 aa-0.24□□□□□ -2.45
NPAS3-208ENST00000550662 PDZD2O15018 2839 aa-0.24□□□□□ -2.45
NPAS3-208ENST00000550662 A0A0G2JMZ2 1700 aa-0.24□□□□□ -2.45
NPAS3-208ENST00000550662 URB1O60287 2271 aaKnown RBP-0.25□□□□□ -2.45
NPAS3-208ENST00000550662 STAB2Q8WWQ8 2551 aa-0.25□□□□□ -2.45
NPAS3-208ENST00000550662 TMEM218A2RU14 115 aa-0.25□□□□□ -2.45
NPAS3-208ENST00000550662 K7EQZ3 153 aa-0.25□□□□□ -2.45
NPAS3-208ENST00000550662 BIRC6Q9NR09 4857 aa-0.25□□□□□ -2.45
NPAS3-208ENST00000550662 XRN1Q8IZH2 1706 aaKnown RBP-0.25□□□□□ -2.45
NPAS3-208ENST00000550662 NBPF19A0A087WUL8 3843 aa-0.26□□□□□ -2.45
NPAS3-208ENST00000550662 LCN9Q8WX39 176 aa-0.26□□□□□ -2.45
NPAS3-208ENST00000550662 VAMP8Q9BV40 100 aa-0.26□□□□□ -2.45
NPAS3-208ENST00000550662 FLNBO75369 2602 aaKnown RBP-0.26□□□□□ -2.45
NPAS3-208ENST00000550662 COL4A6Q14031 1691 aa-0.27□□□□□ -2.45
NPAS3-208ENST00000550662 DNHD1Q96M86 4753 aa-0.27□□□□□ -2.45
NPAS3-208ENST00000550662 USMG5Q96IX5 58 aa-0.27□□□□□ -2.45
NPAS3-208ENST00000550662 PDCD11Q14690 1871 aaKnown RBP-0.27□□□□□ -2.45
NPAS3-208ENST00000550662 DNAH9Q9NYC9 4486 aa-0.27□□□□□ -2.45
NPAS3-208ENST00000550662 C14orf144Q96I85 54 aa-0.28□□□□□ -2.45
NPAS3-208ENST00000550662 DNAJC13O75165 2243 aa-0.28□□□□□ -2.45
NPAS3-208ENST00000550662 NBEAL1Q6ZS30 2694 aa-0.28□□□□□ -2.45
NPAS3-208ENST00000550662 SVEP1Q4LDE5 3571 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 PKD1P98161 4303 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 COL12A1Q99715 3063 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 LAMA5O15230 3695 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 GNGT2O14610 69 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 SPRR2BP35325 72 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 KIAA0556O60303 1618 aa-0.29□□□□□ -2.46
NPAS3-208ENST00000550662 CACFD1Q9UGQ2 172 aa-0.3□□□□□ -2.46
NPAS3-208ENST00000550662 DNAH6Q9C0G6 4158 aa-0.3□□□□□ -2.46
NPAS3-208ENST00000550662 PLEKHH2Q8IVE3 1493 aa-0.3□□□□□ -2.46
NPAS3-208ENST00000550662 TGP01266 2768 aa-0.3□□□□□ -2.46
NPAS3-208ENST00000550662 CNOT1A5YKK6 2376 aaKnown RBP-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 VPS13DQ5THJ4 4388 aa-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 TRAV30A0A087WSZ9 112 aa-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 SPINK4O60575 86 aa-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 COX8AP10176 69 aa-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 KRTAP20-2Q3LI61 65 aa-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 KRTAP20-1Q3LI63 56 aa-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 LAMA2P24043 3122 aaKnown RBP-0.31□□□□□ -2.46
NPAS3-208ENST00000550662 DNAH3Q8TD57 4116 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 DOPEY1Q5JWR5 2465 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 A0A087WVE0 104 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 C7orf77A4D0Y5 90 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 SYS1-DBNDD2H3BUS1 97 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 REV3LO60673 3130 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 BPTFQ12830 3046 aa-0.32□□□□□ -2.46
NPAS3-208ENST00000550662 TEP1Q99973 2627 aaKnown RBP-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 PRDM15P57071 1507 aaPredicted RBP-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 NBEAL2Q6ZNJ1 2754 aa-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 NLRP1Q9C000 1473 aa-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 TRBV25-1A0A075B6N4 114 aa-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 MT4P47944 62 aa-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 KRTAP19-7Q3SYF9 63 aa-0.33□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms