RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 AEBP2Q6ZN18 517 aaPredicted RBP30.73■■■□□ 2.51
NPAS3-208ENST00000550662 CHIC1Q5VXU3 224 aa29.22■■■□□ 2.27
NPAS3-208ENST00000550662 SENP3Q9H4L4 574 aaPredicted RBP26.12■■□□□ 1.77
NPAS3-208ENST00000550662 PHF23Q9BUL5 403 aaPredicted RBP25.84■■□□□ 1.73
NPAS3-208ENST00000550662 FOXD1Q16676 465 aa24.39■■□□□ 1.49
NPAS3-208ENST00000550662 PLPPR3Q6T4P5 718 aa23.35■■□□□ 1.33
NPAS3-208ENST00000550662 PPP6R1Q9UPN7 881 aa22.91■■□□□ 1.26
NPAS3-208ENST00000550662 ADRA2BP18089 450 aa22.81■■□□□ 1.24
NPAS3-208ENST00000550662 PIAS4Q8N2W9 510 aaPredicted RBP22.76■■□□□ 1.23
NPAS3-208ENST00000550662 MSH5O43196 834 aa22.73■■□□□ 1.23
NPAS3-208ENST00000550662 POTEDQ86YR6 584 aa22.09■■□□□ 1.13
NPAS3-208ENST00000550662 MAPK8IP2Q13387 824 aaPredicted RBP20.94■□□□□ 0.94
NPAS3-208ENST00000550662 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
NPAS3-208ENST00000550662 DMRT2Q9Y5R5 561 aa20.75■□□□□ 0.91
NPAS3-208ENST00000550662 PPP4R3CPQ6ZMV5 832 aa20.5■□□□□ 0.87
NPAS3-208ENST00000550662 CNKSR2Q8WXI2 1034 aa20.09■□□□□ 0.81
NPAS3-208ENST00000550662 KCNA4P22459 653 aa20.08■□□□□ 0.81
NPAS3-208ENST00000550662 HOXD11P31277 338 aaPredicted RBP20.04■□□□□ 0.8
NPAS3-208ENST00000550662 RNF216Q9NWF9 866 aaPredicted RBP19.89■□□□□ 0.77
NPAS3-208ENST00000550662 DCAF8L1A6NGE4 600 aa19.83■□□□□ 0.77
NPAS3-208ENST00000550662 NCBP3Q53F19 620 aaKnown RBP19.68■□□□□ 0.74
NPAS3-208ENST00000550662 NPM3O75607 178 aaKnown RBP19.46■□□□□ 0.71
NPAS3-208ENST00000550662 CACNB1Q02641 598 aaPredicted RBP19.45■□□□□ 0.7
NPAS3-208ENST00000550662 RNF39Q9H2S5 420 aa19.44■□□□□ 0.7
NPAS3-208ENST00000550662 EHMT2Q96KQ7 1210 aa19.41■□□□□ 0.7
NPAS3-208ENST00000550662 DNAJC5BQ9UF47 199 aa19.33■□□□□ 0.68
NPAS3-208ENST00000550662 SLC4A1APQ9BWU0 796 aaKnown RBP19.29■□□□□ 0.68
NPAS3-208ENST00000550662 C1QBPQ07021 282 aaKnown RBP19.14■□□□□ 0.65
NPAS3-208ENST00000550662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.03■□□□□ 0.64
NPAS3-208ENST00000550662 CSRNP3Q8WYN3 585 aa18.91■□□□□ 0.62
NPAS3-208ENST00000550662 U3KPZ7 1027 aaPredicted RBP18.69■□□□□ 0.58
NPAS3-208ENST00000550662 SLC4A2P04920 1241 aa18.6■□□□□ 0.57
NPAS3-208ENST00000550662 ZBTB22O15209 634 aa18.46■□□□□ 0.55
NPAS3-208ENST00000550662 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
NPAS3-208ENST00000550662 FOXD4L1Q9NU39 408 aa18.37■□□□□ 0.53
NPAS3-208ENST00000550662 CAPN15O75808 1086 aa18.31■□□□□ 0.52
NPAS3-208ENST00000550662 DSG3P32926 999 aa18.25■□□□□ 0.51
NPAS3-208ENST00000550662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.12■□□□□ 0.49
NPAS3-208ENST00000550662 HNRNPUL2Q1KMD3 747 aaKnown RBP18.12■□□□□ 0.49
NPAS3-208ENST00000550662 APLP2Q06481 763 aa18.08■□□□□ 0.48
NPAS3-208ENST00000550662 TRHP20396 242 aaPredicted RBP18.05■□□□□ 0.48
NPAS3-208ENST00000550662 SAMD1Q6SPF0 538 aaPredicted RBP18.03■□□□□ 0.48
NPAS3-208ENST00000550662 ZNF219Q9P2Y4 722 aaPredicted RBP18■□□□□ 0.47
NPAS3-208ENST00000550662 MYCNP04198 464 aaPredicted RBP17.96■□□□□ 0.47
NPAS3-208ENST00000550662 ABCB7O75027 752 aa17.91■□□□□ 0.46
NPAS3-208ENST00000550662 ATXN8OSP0DMR3 200 aa17.73■□□□□ 0.43
NPAS3-208ENST00000550662 POLA2Q14181 598 aa17.61■□□□□ 0.41
NPAS3-208ENST00000550662 ATF5Q9Y2D1 282 aaPredicted RBP17.61■□□□□ 0.41
NPAS3-208ENST00000550662 RBM42Q9BTD8 480 aaKnown RBP17.33■□□□□ 0.36
NPAS3-208ENST00000550662 POTEHQ6S545 545 aa17.32■□□□□ 0.36
NPAS3-208ENST00000550662 ZBTB12Q9Y330 459 aaPredicted RBP17.19■□□□□ 0.34
NPAS3-208ENST00000550662 FKBP8Q14318 412 aa17.07■□□□□ 0.32
NPAS3-208ENST00000550662 OSCARQ8IYS5 282 aa17.02■□□□□ 0.32
NPAS3-208ENST00000550662 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
NPAS3-208ENST00000550662 CHRDL2Q6WN34 429 aa16.96■□□□□ 0.31
NPAS3-208ENST00000550662 REM2Q8IYK8 340 aaPredicted RBP16.85■□□□□ 0.29
NPAS3-208ENST00000550662 FBLN2P98095 1184 aa16.81■□□□□ 0.28
NPAS3-208ENST00000550662 MKRN4PQ13434 485 aaPredicted RBP16.8■□□□□ 0.28
NPAS3-208ENST00000550662 AMER1Q5JTC6 1135 aaPredicted RBP16.77■□□□□ 0.28
NPAS3-208ENST00000550662 SPDYE2BA6NHP3 402 aa16.71■□□□□ 0.27
NPAS3-208ENST00000550662 SPDYE6P0CI01 402 aa16.71■□□□□ 0.27
NPAS3-208ENST00000550662 SPDYE2Q495Y8 402 aa16.71■□□□□ 0.27
NPAS3-208ENST00000550662 PITPNM1O00562 1244 aa16.66■□□□□ 0.26
NPAS3-208ENST00000550662 RTN4Q9NQC3 1192 aaKnown RBP16.63■□□□□ 0.25
NPAS3-208ENST00000550662 PIP4P2Q8N4L2 257 aa16.59■□□□□ 0.25
NPAS3-208ENST00000550662 FXR2P51116 673 aaKnown RBP eCLIP16.53■□□□□ 0.24
NPAS3-208ENST00000550662 ZNF692Q9BU19 519 aaPredicted RBP16.53■□□□□ 0.24
NPAS3-208ENST00000550662 SSUH2Q9Y2M2 353 aa16.52■□□□□ 0.24
NPAS3-208ENST00000550662 SPDYE4A6NLX3 237 aa16.47■□□□□ 0.23
NPAS3-208ENST00000550662 FBXO3Q9UK99 471 aa16.4■□□□□ 0.22
NPAS3-208ENST00000550662 SPDYE1Q8NFV5 336 aaPredicted RBP16.39■□□□□ 0.21
NPAS3-208ENST00000550662 CLEC11AQ9Y240 323 aa16.36■□□□□ 0.21
NPAS3-208ENST00000550662 PROM2Q8N271 834 aa16.32■□□□□ 0.2
NPAS3-208ENST00000550662 PABPN1Q86U42 306 aaKnown RBP eCLIP16.29■□□□□ 0.2
NPAS3-208ENST00000550662 SP7Q8TDD2 431 aaPredicted RBP16.26■□□□□ 0.19
NPAS3-208ENST00000550662 HAX1O00165 279 aa16.24■□□□□ 0.19
NPAS3-208ENST00000550662 PRKAR2AP13861 404 aaKnown RBP16.22■□□□□ 0.19
NPAS3-208ENST00000550662 SLC24A1O60721 1099 aa16.13■□□□□ 0.17
NPAS3-208ENST00000550662 EVX2Q03828 476 aa16.13■□□□□ 0.17
NPAS3-208ENST00000550662 PRR29P0C7W0 189 aa16.11■□□□□ 0.17
NPAS3-208ENST00000550662 VASPP50552 380 aaPredicted RBP16.08■□□□□ 0.16
NPAS3-208ENST00000550662 CHADLQ6NUI6 762 aa16.08■□□□□ 0.16
NPAS3-208ENST00000550662 C19orf67A6NJJ6 358 aa15.98■□□□□ 0.15
NPAS3-208ENST00000550662 IFNLR1Q8IU57 520 aaPredicted RBP15.87■□□□□ 0.13
NPAS3-208ENST00000550662 FARP1Q9Y4F1 1045 aaPredicted RBP15.84■□□□□ 0.13
NPAS3-208ENST00000550662 STAG3Q9UJ98 1225 aa15.83■□□□□ 0.12
NPAS3-208ENST00000550662 CREBZFQ9NS37 354 aa15.77■□□□□ 0.12
NPAS3-208ENST00000550662 GABBR2O75899 941 aa15.72■□□□□ 0.11
NPAS3-208ENST00000550662 CD44P16070 742 aaKnown RBP15.7■□□□□ 0.1
NPAS3-208ENST00000550662 KLHL34Q8N239 644 aa15.67■□□□□ 0.1
NPAS3-208ENST00000550662 SPOCK2Q92563 424 aa15.64■□□□□ 0.09
NPAS3-208ENST00000550662 PLCD3Q8N3E9 789 aa15.62■□□□□ 0.09
NPAS3-208ENST00000550662 PKD2Q13563 968 aa15.59■□□□□ 0.09
NPAS3-208ENST00000550662 MIER1Q8N108 512 aa15.56■□□□□ 0.08
NPAS3-208ENST00000550662 MNX1P50219 401 aaPredicted RBP15.54■□□□□ 0.08
NPAS3-208ENST00000550662 PLEKHG5O94827 1062 aa15.52■□□□□ 0.08
NPAS3-208ENST00000550662 DCAF8L2P0C7V8 631 aa15.5■□□□□ 0.07
NPAS3-208ENST00000550662 ZBTB47Q9UFB7 747 aaPredicted RBP15.49■□□□□ 0.07
NPAS3-208ENST00000550662 ZRANB1Q9UGI0 708 aa15.49■□□□□ 0.07
NPAS3-208ENST00000550662 ZNF579Q8NAF0 562 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms