RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 Q6YL49 198 aa10.8□□□□□ -0.68
HLA-DQB1-209ENST00000487676 ZNF702PQ9H963 129 aa10.8□□□□□ -0.68
HLA-DQB1-209ENST00000487676 ODF3L2Q3SX64 289 aa10.79□□□□□ -0.68
HLA-DQB1-209ENST00000487676 IGF2RP11717 2491 aa10.79□□□□□ -0.68
HLA-DQB1-209ENST00000487676 TRANK1O15050 2925 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 C18orf65Q6ZTR6 163 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 A0A1W2PPR1 153 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 ESRGQ1W209 222 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 JMJD1CQ15652 2540 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 C3orf84H3BNL1 204 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 APOC4P55056 127 aa10.78□□□□□ -0.68
HLA-DQB1-209ENST00000487676 ZNF73O43830 326 aaPredicted RBP10.77□□□□□ -0.68
HLA-DQB1-209ENST00000487676 Q96MF0 132 aa10.77□□□□□ -0.68
HLA-DQB1-209ENST00000487676 C19orf84I3L1E1 186 aa10.77□□□□□ -0.69
HLA-DQB1-209ENST00000487676 SEC61GP60059 68 aa10.77□□□□□ -0.69
HLA-DQB1-209ENST00000487676 USP9XQ93008 2570 aaPredicted RBP10.76□□□□□ -0.69
HLA-DQB1-209ENST00000487676 ZNF462Q96JM2 2506 aa10.75□□□□□ -0.69
HLA-DQB1-209ENST00000487676 C9orf116Q5BN46 136 aaPredicted RBP10.75□□□□□ -0.69
HLA-DQB1-209ENST00000487676 AVPP01185 164 aa10.75□□□□□ -0.69
HLA-DQB1-209ENST00000487676 LINC00336Q6ZUF6 198 aa10.75□□□□□ -0.69
HLA-DQB1-209ENST00000487676 USP9YO00507 2555 aaPredicted RBP10.74□□□□□ -0.69
HLA-DQB1-209ENST00000487676 SPTSSBQ8NFR3 76 aa10.74□□□□□ -0.69
HLA-DQB1-209ENST00000487676 LAMA3Q16787 3333 aa10.74□□□□□ -0.69
HLA-DQB1-209ENST00000487676 UBE2BP63146 152 aa10.74□□□□□ -0.69
HLA-DQB1-209ENST00000487676 Q6ZQT0 140 aa10.73□□□□□ -0.69
HLA-DQB1-209ENST00000487676 FN1P02751 2386 aaKnown RBP10.73□□□□□ -0.69
HLA-DQB1-209ENST00000487676 NDUFB1O75438 58 aa10.73□□□□□ -0.69
HLA-DQB1-209ENST00000487676 CEP295Q9C0D2 2601 aa10.72□□□□□ -0.69
HLA-DQB1-209ENST00000487676 TRAV10A0A0B4J240 114 aa10.72□□□□□ -0.69
HLA-DQB1-209ENST00000487676 LRCOL1A6NCL2 159 aa10.72□□□□□ -0.69
HLA-DQB1-209ENST00000487676 UNQ6190/PRO20217Q6UXQ8 127 aa10.72□□□□□ -0.69
HLA-DQB1-209ENST00000487676 CELA1Q9UNI1 258 aa10.72□□□□□ -0.69
HLA-DQB1-209ENST00000487676 UNC80Q8N2C7 3258 aa10.72□□□□□ -0.69
HLA-DQB1-209ENST00000487676 IGKV2D-24A0A075B6R9 120 aa10.71□□□□□ -0.69
HLA-DQB1-209ENST00000487676 SPART-AS1P0CW21 52 aa10.71□□□□□ -0.69
HLA-DQB1-209ENST00000487676 KLKP1Q107X0 134 aa10.71□□□□□ -0.69
HLA-DQB1-209ENST00000487676 BBC3Q96PG8 261 aaPredicted RBP10.71□□□□□ -0.69
HLA-DQB1-209ENST00000487676 FAM30AQ9NZY2 134 aa10.71□□□□□ -0.69
HLA-DQB1-209ENST00000487676 LOC110117498A0A087WWA1 95 aa10.71□□□□□ -0.7
HLA-DQB1-209ENST00000487676 CYSRT1A8MQ03 144 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 A8MTW9 85 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 M0R378 163 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 LINC00482Q8N8I6 264 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 RANBP2P49792 3224 aaKnown RBP10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 A0A1B0GUV1 79 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 H7BZZ5 65 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 PRR4Q16378 134 aa10.7□□□□□ -0.7
HLA-DQB1-209ENST00000487676 LYRM9A8MSI8 78 aa10.69□□□□□ -0.7
HLA-DQB1-209ENST00000487676 C9orf129Q5T035 196 aaKnown RBP10.69□□□□□ -0.7
HLA-DQB1-209ENST00000487676 J3QKU1 62 aa10.69□□□□□ -0.7
HLA-DQB1-209ENST00000487676 SPATA3Q8NHX4 192 aa10.69□□□□□ -0.7
HLA-DQB1-209ENST00000487676 DEFB4AO15263 64 aa10.68□□□□□ -0.7
HLA-DQB1-209ENST00000487676 C6orf223Q8N319 242 aa10.68□□□□□ -0.7
HLA-DQB1-209ENST00000487676 TM2D3Q9BRN9 247 aa10.67□□□□□ -0.7
HLA-DQB1-209ENST00000487676 WFDC10AQ9H1F0 79 aa10.67□□□□□ -0.7
HLA-DQB1-209ENST00000487676 SETD2Q9BYW2 2564 aaPredicted RBP10.66□□□□□ -0.7
HLA-DQB1-209ENST00000487676 ANKRD11Q6UB99 2663 aaPredicted RBP10.66□□□□□ -0.7
HLA-DQB1-209ENST00000487676 LY6G6DO95868 133 aa10.66□□□□□ -0.7
HLA-DQB1-209ENST00000487676 PMAIP1Q13794 54 aa10.66□□□□□ -0.7
HLA-DQB1-209ENST00000487676 DEFB135Q30KP9 77 aa10.66□□□□□ -0.7
HLA-DQB1-209ENST00000487676 TLN2Q9Y4G6 2542 aa10.65□□□□□ -0.7
HLA-DQB1-209ENST00000487676 CDK2AP2O75956 126 aa10.65□□□□□ -0.7
HLA-DQB1-209ENST00000487676 FASNP49327 2511 aaKnown RBP10.65□□□□□ -0.7
HLA-DQB1-209ENST00000487676 LINC01006Q8NI28 216 aa10.65□□□□□ -0.7
HLA-DQB1-209ENST00000487676 OBSCN-AS1Q96MR7 158 aa10.65□□□□□ -0.71
HLA-DQB1-209ENST00000487676 LRRK2Q5S007 2527 aa10.64□□□□□ -0.71
HLA-DQB1-209ENST00000487676 PSPHP1O15172 72 aa10.64□□□□□ -0.71
HLA-DQB1-209ENST00000487676 Q8N9L7 120 aa10.63□□□□□ -0.71
HLA-DQB1-209ENST00000487676 CHKB-CPT1BH3BT56 60 aa10.62□□□□□ -0.71
HLA-DQB1-209ENST00000487676 LINC00474Q9P2X8 69 aa10.62□□□□□ -0.71
HLA-DQB1-209ENST00000487676 DNAH14Q0VDD8 3507 aa10.62□□□□□ -0.71
HLA-DQB1-209ENST00000487676 FAM104AQ969W3 186 aa10.62□□□□□ -0.71
HLA-DQB1-209ENST00000487676 CYSTM1Q9H1C7 97 aa10.61□□□□□ -0.71
HLA-DQB1-209ENST00000487676 HIGD2AQ9BW72 106 aa10.61□□□□□ -0.71
HLA-DQB1-209ENST00000487676 IGHV4-31P0DP07 118 aa10.61□□□□□ -0.71
HLA-DQB1-209ENST00000487676 Q5XG85 94 aa10.6□□□□□ -0.71
HLA-DQB1-209ENST00000487676 PLAC8L1A1L4L8 177 aa10.6□□□□□ -0.71
HLA-DQB1-209ENST00000487676 DEFB113Q30KQ7 82 aa10.6□□□□□ -0.71
HLA-DQB1-209ENST00000487676 DNAJC9-AS1A6NH13 148 aa10.59□□□□□ -0.71
HLA-DQB1-209ENST00000487676 F8WDY8 70 aa10.59□□□□□ -0.71
HLA-DQB1-209ENST00000487676 ERC2-IT1O76042 136 aa10.59□□□□□ -0.71
HLA-DQB1-209ENST00000487676 DHRS4-AS1Q9P1J3 65 aa10.59□□□□□ -0.71
HLA-DQB1-209ENST00000487676 LELP1Q5T871 98 aa10.59□□□□□ -0.71
HLA-DQB1-209ENST00000487676 UBE2AP49459 152 aa10.58□□□□□ -0.72
HLA-DQB1-209ENST00000487676 A6NED7 52 aa10.58□□□□□ -0.72
HLA-DQB1-209ENST00000487676 C9orf66Q5T8R8 295 aa10.57□□□□□ -0.72
HLA-DQB1-209ENST00000487676 WFDC13Q8IUB5 93 aa10.57□□□□□ -0.72
HLA-DQB1-209ENST00000487676 XIRP2A4UGR9 3374 aa10.56□□□□□ -0.72
HLA-DQB1-209ENST00000487676 NBEAQ8NFP9 2946 aa10.56□□□□□ -0.72
HLA-DQB1-209ENST00000487676 WFDC10BQ8IUB3 73 aa10.56□□□□□ -0.72
HLA-DQB1-209ENST00000487676 EGFEM1PQ0D2K5 195 aa10.56□□□□□ -0.72
HLA-DQB1-209ENST00000487676 C1orf137Q5JT78 98 aa10.54□□□□□ -0.72
HLA-DQB1-209ENST00000487676 SYCNQ0VAF6 134 aa10.54□□□□□ -0.72
HLA-DQB1-209ENST00000487676 LINC00167Q96N53 147 aa10.54□□□□□ -0.72
HLA-DQB1-209ENST00000487676 NANOS2P60321 138 aaKnown RBP10.54□□□□□ -0.72
HLA-DQB1-209ENST00000487676 NDUFS5O43920 106 aa10.53□□□□□ -0.72
HLA-DQB1-209ENST00000487676 ABCA12Q86UK0 2595 aa10.53□□□□□ -0.72
HLA-DQB1-209ENST00000487676 PLA2G2AP14555 144 aa10.53□□□□□ -0.72
HLA-DQB1-209ENST00000487676 RETNQ9HD89 108 aa10.53□□□□□ -0.72
HLA-DQB1-209ENST00000487676 PKD1L2Q7Z442 2459 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms