RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 NISCHQ9Y2I1 1504 aa26.32■■□□□ 1.8
HLA-DQB1-209ENST00000487676 SUPT5HO00267 1087 aaKnown RBP25.07■■□□□ 1.6
HLA-DQB1-209ENST00000487676 PELP1Q8IZL8 1130 aaKnown RBP24.97■■□□□ 1.59
HLA-DQB1-209ENST00000487676 PCGF6Q9BYE7 350 aa24.71■■□□□ 1.55
HLA-DQB1-209ENST00000487676 HRCP23327 699 aa24.67■■□□□ 1.54
HLA-DQB1-209ENST00000487676 SHROOM4Q9ULL8 1493 aa24.65■■□□□ 1.54
HLA-DQB1-209ENST00000487676 DCAF8L2P0C7V8 631 aa24.43■■□□□ 1.5
HLA-DQB1-209ENST00000487676 MYT1Q01538 1121 aa24.39■■□□□ 1.49
HLA-DQB1-209ENST00000487676 ZEB1P37275 1124 aaPredicted RBP24.19■■□□□ 1.46
HLA-DQB1-209ENST00000487676 PPARGC1BQ86YN6 1023 aaKnown RBP23.99■■□□□ 1.43
HLA-DQB1-209ENST00000487676 CENPBP07199 599 aaPredicted RBP23.9■■□□□ 1.42
HLA-DQB1-209ENST00000487676 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
HLA-DQB1-209ENST00000487676 CHIC1Q5VXU3 224 aa23.71■■□□□ 1.39
HLA-DQB1-209ENST00000487676 EHMT2Q96KQ7 1210 aa23.51■■□□□ 1.35
HLA-DQB1-209ENST00000487676 CCER1Q8TC90 406 aaPredicted RBP23.43■■□□□ 1.34
HLA-DQB1-209ENST00000487676 FAM9AQ8IZU1 332 aaPredicted RBP23.37■■□□□ 1.33
HLA-DQB1-209ENST00000487676 LOC105371045A0A1W2PR82 267 aa23.36■■□□□ 1.33
HLA-DQB1-209ENST00000487676 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
HLA-DQB1-209ENST00000487676 YTHDC1Q96MU7 727 aaKnown RBP23.11■■□□□ 1.29
HLA-DQB1-209ENST00000487676 GTF3C3Q9Y5Q9 886 aa23.06■■□□□ 1.28
HLA-DQB1-209ENST00000487676 SCAF1Q9H7N4 1312 aaKnown RBP23.05■■□□□ 1.28
HLA-DQB1-209ENST00000487676 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
HLA-DQB1-209ENST00000487676 DCAF1Q9Y4B6 1507 aa23.01■■□□□ 1.27
HLA-DQB1-209ENST00000487676 DIEXFQ68CQ4 756 aaKnown RBP22.98■■□□□ 1.27
HLA-DQB1-209ENST00000487676 TTBK1Q5TCY1 1321 aaPredicted RBP22.96■■□□□ 1.27
HLA-DQB1-209ENST00000487676 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.78■■□□□ 1.24
HLA-DQB1-209ENST00000487676 APLP2Q06481 763 aa22.78■■□□□ 1.24
HLA-DQB1-209ENST00000487676 MYO15BQ96JP2 1530 aa22.76■■□□□ 1.23
HLA-DQB1-209ENST00000487676 ERICH6Q7L0X2 663 aa22.69■■□□□ 1.22
HLA-DQB1-209ENST00000487676 NEUROD1Q13562 356 aa22.69■■□□□ 1.22
HLA-DQB1-209ENST00000487676 NEFLP07196 543 aa22.54■■□□□ 1.2
HLA-DQB1-209ENST00000487676 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.19
HLA-DQB1-209ENST00000487676 ZNF316A6NFI3 1004 aaPredicted RBP22.43■■□□□ 1.18
HLA-DQB1-209ENST00000487676 UBTFP17480 764 aaKnown RBP22.42■■□□□ 1.18
HLA-DQB1-209ENST00000487676 HNRNPUL2Q1KMD3 747 aaKnown RBP22.22■■□□□ 1.15
HLA-DQB1-209ENST00000487676 CLSPNQ9HAW4 1339 aa22.22■■□□□ 1.15
HLA-DQB1-209ENST00000487676 ZCCHC6Q5VYS8 1495 aaKnown RBP22.16■■□□□ 1.14
HLA-DQB1-209ENST00000487676 RANGAP1P46060 587 aaPredicted RBP22.07■■□□□ 1.12
HLA-DQB1-209ENST00000487676 BCANQ96GW7 911 aa21.97■■□□□ 1.11
HLA-DQB1-209ENST00000487676 MIER1Q8N108 512 aa21.93■■□□□ 1.1
HLA-DQB1-209ENST00000487676 ANP32EQ9BTT0 268 aa21.91■■□□□ 1.1
HLA-DQB1-209ENST00000487676 BCL11AQ9H165 835 aa21.74■■□□□ 1.07
HLA-DQB1-209ENST00000487676 CDK11AQ9UQ88 783 aaPredicted RBP21.71■■□□□ 1.07
HLA-DQB1-209ENST00000487676 RTL5Q5HYW3 569 aaPredicted RBP21.69■■□□□ 1.06
HLA-DQB1-209ENST00000487676 FKBP8Q14318 412 aa21.67■■□□□ 1.06
HLA-DQB1-209ENST00000487676 ITGAEP38570 1179 aa21.66■■□□□ 1.06
HLA-DQB1-209ENST00000487676 MYT1LQ9UL68 1186 aa21.61■■□□□ 1.05
HLA-DQB1-209ENST00000487676 SUPT16HQ9Y5B9 1047 aaKnown RBP21.59■■□□□ 1.05
HLA-DQB1-209ENST00000487676 ANP32CO43423 234 aa21.54■■□□□ 1.04
HLA-DQB1-209ENST00000487676 CSRNP3Q8WYN3 585 aa21.53■■□□□ 1.04
HLA-DQB1-209ENST00000487676 ATP1B4Q9UN42 357 aaPredicted RBP21.47■■□□□ 1.03
HLA-DQB1-209ENST00000487676 TSHZ2Q9NRE2 1034 aa21.38■■□□□ 1.01
HLA-DQB1-209ENST00000487676 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
HLA-DQB1-209ENST00000487676 DAXXQ9UER7 740 aaPredicted RBP21.35■■□□□ 1.01
HLA-DQB1-209ENST00000487676 CEP162Q5TB80 1403 aa21.31■■□□□ 1
HLA-DQB1-209ENST00000487676 DDX10Q13206 875 aaKnown RBP21.28■■□□□ 1
HLA-DQB1-209ENST00000487676 ANP32AP39687 249 aaKnown RBP21.24■□□□□ 0.99
HLA-DQB1-209ENST00000487676 TRIM52Q96A61 297 aa21.23■□□□□ 0.99
HLA-DQB1-209ENST00000487676 RBM19Q9Y4C8 960 aaKnown RBP21.19■□□□□ 0.98
HLA-DQB1-209ENST00000487676 TNIKQ9UKE5 1360 aa21.17■□□□□ 0.98
HLA-DQB1-209ENST00000487676 FAM50AQ14320 339 aaKnown RBP21.16■□□□□ 0.98
HLA-DQB1-209ENST00000487676 HNRNPUQ00839 825 aaKnown RBP eCLIP21.14■□□□□ 0.97
HLA-DQB1-209ENST00000487676 NBR1Q14596 966 aa21.12■□□□□ 0.97
HLA-DQB1-209ENST00000487676 RB1CC1Q8TDY2 1594 aa21.1■□□□□ 0.97
HLA-DQB1-209ENST00000487676 SCRIBQ14160 1630 aa21.1■□□□□ 0.97
HLA-DQB1-209ENST00000487676 EEA1Q15075 1411 aa21.09■□□□□ 0.97
HLA-DQB1-209ENST00000487676 CLIP1P30622 1438 aa21.04■□□□□ 0.96
HLA-DQB1-209ENST00000487676 POLR3GLQ9BT43 218 aa21.03■□□□□ 0.96
HLA-DQB1-209ENST00000487676 GOLGA3Q08378 1498 aa21.01■□□□□ 0.95
HLA-DQB1-209ENST00000487676 ZBTB47Q9UFB7 747 aaPredicted RBP21.01■□□□□ 0.95
HLA-DQB1-209ENST00000487676 CNGB1Q14028 1251 aaPredicted RBP21■□□□□ 0.95
HLA-DQB1-209ENST00000487676 EIF5BO60841 1220 aaKnown RBP20.99■□□□□ 0.95
HLA-DQB1-209ENST00000487676 IRX6P78412 446 aaPredicted RBP20.99■□□□□ 0.95
HLA-DQB1-209ENST00000487676 ABCC9O60706 1549 aa20.96■□□□□ 0.95
HLA-DQB1-209ENST00000487676 DEKP35659 375 aaKnown RBP20.95■□□□□ 0.94
HLA-DQB1-209ENST00000487676 WRNQ14191 1432 aaPredicted RBP eCLIP20.95■□□□□ 0.94
HLA-DQB1-209ENST00000487676 NPM2Q86SE8 214 aaKnown RBP20.89■□□□□ 0.94
HLA-DQB1-209ENST00000487676 TONSLQ96HA7 1378 aa20.89■□□□□ 0.93
HLA-DQB1-209ENST00000487676 CCDC136Q96JN2 1154 aa20.85■□□□□ 0.93
HLA-DQB1-209ENST00000487676 NOP58Q9Y2X3 529 aaKnown RBP20.85■□□□□ 0.93
HLA-DQB1-209ENST00000487676 PPP4R2Q9NY27 417 aa20.85■□□□□ 0.93
HLA-DQB1-209ENST00000487676 HIRIP3Q9BW71 556 aaPredicted RBP20.82■□□□□ 0.92
HLA-DQB1-209ENST00000487676 CCER2I3L3R5 266 aa20.82■□□□□ 0.92
HLA-DQB1-209ENST00000487676 FAM9BQ8IZU0 186 aa20.81■□□□□ 0.92
HLA-DQB1-209ENST00000487676 CEP164Q9UPV0 1460 aa20.77■□□□□ 0.91
HLA-DQB1-209ENST00000487676 GLIPR1L2Q4G1C9 344 aa20.73■□□□□ 0.91
HLA-DQB1-209ENST00000487676 SOGA1O94964 1423 aa20.72■□□□□ 0.91
HLA-DQB1-209ENST00000487676 ERICH6BQ5W0A0 696 aa20.72■□□□□ 0.91
HLA-DQB1-209ENST00000487676 MRS2Q9HD23 443 aa20.71■□□□□ 0.91
HLA-DQB1-209ENST00000487676 FANCIQ9NVI1 1328 aa20.7■□□□□ 0.91
HLA-DQB1-209ENST00000487676 VPS8Q8N3P4 1428 aa20.68■□□□□ 0.9
HLA-DQB1-209ENST00000487676 RTN4Q9NQC3 1192 aaKnown RBP20.65■□□□□ 0.9
HLA-DQB1-209ENST00000487676 KCNH8Q96L42 1107 aa20.65■□□□□ 0.9
HLA-DQB1-209ENST00000487676 TIMELESSQ9UNS1 1208 aa20.63■□□□□ 0.89
HLA-DQB1-209ENST00000487676 B4GALNT3Q6L9W6 998 aa20.63■□□□□ 0.89
HLA-DQB1-209ENST00000487676 PPM1GO15355 546 aaPredicted RBP20.6■□□□□ 0.89
HLA-DQB1-209ENST00000487676 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
HLA-DQB1-209ENST00000487676 CECR2Q9BXF3 1484 aa20.6■□□□□ 0.89
HLA-DQB1-209ENST00000487676 DHX57Q6P158 1386 aaKnown RBP20.6■□□□□ 0.89
HLA-DQB1-209ENST00000487676 SIN3AQ96ST3 1273 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms