RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SUPT4H1P63272 117 aaKnown RBP1.41□□□□□ -2.18
HMGB1-201ENST00000326004 ZNF56Q15929 161 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 RTL8BQ17RB0 113 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 VMA21Q3ZAQ7 101 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 TMEM155Q4W5P6 130 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 AAED1Q7RTV5 226 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 LHFPL1Q86WI0 220 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 RPS19BP1Q86WX3 136 aaKnown RBP1.41□□□□□ -2.18
HMGB1-201ENST00000326004 C20orf166-AS1Q96NR2 134 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 CYSTM1Q9H1C7 97 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 HIGD1BQ9P298 99 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 AMMECR1Q9Y4X0 333 aaPredicted RBP1.41□□□□□ -2.18
HMGB1-201ENST00000326004 HLA-DRB4X5D2U9 266 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 INTS1Q8N201 2190 aaKnown RBP1.41□□□□□ -2.18
HMGB1-201ENST00000326004 NCOA6Q14686 2063 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-201ENST00000326004 EML6Q6ZMW3 1958 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 TRAV7A0A075B6U4 112 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 IGHV1-24A0A0C4DH33 117 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 TRBV7-7A0A0K0K1E9 115 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 TCRBV4S1A1TA0A5B7 111 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 H3BSH0 61 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 SSSCA1O60232 199 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 CST7O76096 145 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 NCR2O95944 276 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 IGKCP01834 107 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 TCRAP04437 139 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 MSMBP08118 114 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 PYYP10082 97 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 COX6A1P12074 109 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 PSMB8P28062 276 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 EFNA4P52798 201 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 LINC01545Q5VT33 79 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 C22orf39Q6P5X5 142 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 LCA10Q71F78 164 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 C6orf201Q7Z4U5 140 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 SBSPONQ8IVN8 264 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 DYNAPQ8N1N2 210 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 MORN4Q8NDC4 146 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 Q8NDZ9 215 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 NUP35Q8NFH5 326 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 OR10AC1Q8NH08 325 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 WFDC6Q9BQY6 131 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 DPH3P1Q9H4G8 78 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 NXT2Q9NPJ8 142 aaKnown RBP1.4□□□□□ -2.19
HMGB1-201ENST00000326004 EPDR1Q9UM22 224 aa1.4□□□□□ -2.19
HMGB1-201ENST00000326004 TIMM8BQ9Y5J9 83 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-201ENST00000326004 CCDC88CQ9P219 2028 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 TRAV12-2A0A075B6T6 113 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 TRAV17A0A0B4J275 112 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 A0A0D9SEW6 157 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 LOC107984156A0A0G2JMH3 177 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 LEPROTL1O95214 131 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 IGKV1-16P04430 117 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 GYPBP06028 91 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 CRYGSP22914 178 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 S100A4P26447 101 aaKnown RBP1.39□□□□□ -2.19
HMGB1-201ENST00000326004 GCHFRP30047 84 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 FCER1GP30273 86 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 NPC2P61916 151 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 CIRBPQ14011 172 aaKnown RBP1.39□□□□□ -2.19
HMGB1-201ENST00000326004 SS18Q15532 418 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 LINC01554Q52M75 96 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 GDF5OSQ5U4N7 250 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 MIC13Q5XKP0 118 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 SFTA2Q6UW10 78 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 LYZL1Q6UWQ5 148 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 MIR17HGQ75NE6 70 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 ARL17AQ8IVW1 177 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 RPP25LQ8N5L8 163 aaKnown RBP1.39□□□□□ -2.19
HMGB1-201ENST00000326004 DCANP1Q8TF63 244 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 CHCHD1Q96BP2 118 aaKnown RBP1.39□□□□□ -2.19
HMGB1-201ENST00000326004 Q96M85 177 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 GPX7Q96SL4 187 aaPredicted RBP1.39□□□□□ -2.19
HMGB1-201ENST00000326004 RTL8AQ9BWD3 113 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 SPANXDQ9BXN6 97 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 IMUPQ9GZP8 106 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 PSORS1C2Q9UIG4 136 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 TIMM9Q9Y5J7 89 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 SERP1Q9Y6X1 66 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 ABCA1O95477 2261 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 MDC1Q14676 2089 aaKnown RBP1.39□□□□□ -2.19
HMGB1-201ENST00000326004 MYOFQ9NZM1 2061 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 UNC13CQ8NB66 2214 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 KIAA2026Q5HYC2 2103 aa1.39□□□□□ -2.19
HMGB1-201ENST00000326004 NCKAP5O14513 1909 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 SORL1Q92673 2214 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 CTXND1A0A1B0GTU2 59 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 CRYM-AS1A6NIL9 109 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 H7C2G1 150 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 PPYP01298 95 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 PEBP1P30086 187 aaKnown RBP1.38□□□□□ -2.19
HMGB1-201ENST00000326004 SNRPD3P62318 126 aaKnown RBP1.38□□□□□ -2.19
HMGB1-201ENST00000326004 FXYD3Q14802 87 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 FAM27BQ5VT28 67 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 SLC48A1Q6P1K1 146 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 FP248Q71RG6 208 aaPredicted RBP1.38□□□□□ -2.19
HMGB1-201ENST00000326004 LINC00305Q7Z4B0 112 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 KTN1-AS1Q86SY8 53 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 OR5AS1Q8N127 324 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 PFN4Q8NHR9 129 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 239 ms