RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 TRBV6-4A0A1B0GX49 114 aa11.69□□□□□ -0.54
CTCF-201ENST00000264010 TRBV30A0A0K0K1B3 111 aa11.68□□□□□ -0.54
CTCF-201ENST00000264010 MIAQ16674 131 aa11.68□□□□□ -0.54
CTCF-201ENST00000264010 OVOL2Q9BRP0 275 aa11.68□□□□□ -0.54
CTCF-201ENST00000264010 TRAV13-2A0A0B4J235 113 aa11.67□□□□□ -0.54
CTCF-201ENST00000264010 ORMDL1Q9P0S3 153 aa11.67□□□□□ -0.54
CTCF-201ENST00000264010 Q9UF83 564 aa11.67□□□□□ -0.54
CTCF-201ENST00000264010 SS18Q15532 418 aa11.67□□□□□ -0.54
CTCF-201ENST00000264010 GYPEP15421 78 aa11.66□□□□□ -0.54
CTCF-201ENST00000264010 UPK3BQ9BT76 320 aa11.66□□□□□ -0.54
CTCF-201ENST00000264010 LST1O00453 97 aa11.66□□□□□ -0.54
CTCF-201ENST00000264010 MRPL55Q7Z7F7 128 aaKnown RBP11.66□□□□□ -0.54
CTCF-201ENST00000264010 IMUPQ9GZP8 106 aa11.66□□□□□ -0.54
CTCF-201ENST00000264010 INAFM1C9JVW0 142 aa11.65□□□□□ -0.54
CTCF-201ENST00000264010 COX7A2LO14548 114 aa11.65□□□□□ -0.54
CTCF-201ENST00000264010 PRR4Q16378 134 aa11.65□□□□□ -0.54
CTCF-201ENST00000264010 CLPSL2Q6UWE3 100 aa11.65□□□□□ -0.54
CTCF-201ENST00000264010 C5orf38Q86SI9 138 aa11.65□□□□□ -0.54
CTCF-201ENST00000264010 IGHV4-28A0A0C4DH34 117 aa11.64□□□□□ -0.55
CTCF-201ENST00000264010 NDUFA1O15239 70 aa11.64□□□□□ -0.55
CTCF-201ENST00000264010 ITPR3Q14573 2671 aa11.64□□□□□ -0.55
CTCF-201ENST00000264010 COX7B2Q8TF08 81 aa11.63□□□□□ -0.55
CTCF-201ENST00000264010 MIR7-3HGQ8N6C7 128 aa11.62□□□□□ -0.55
CTCF-201ENST00000264010 A0A096LPF7 62 aa11.62□□□□□ -0.55
CTCF-201ENST00000264010 LOC100131303A0A0U1RQF7 123 aa11.62□□□□□ -0.55
CTCF-201ENST00000264010 TEX15Q9BXT5 2789 aa11.61□□□□□ -0.55
CTCF-201ENST00000264010 LINC00242Q5T6M2 205 aa11.61□□□□□ -0.55
CTCF-201ENST00000264010 CDC42SE2Q9NRR3 84 aa11.61□□□□□ -0.55
CTCF-201ENST00000264010 PRO0255Q9UI72 69 aa11.61□□□□□ -0.55
CTCF-201ENST00000264010 TRBV6-8A0A0A6YYG3 113 aa11.6□□□□□ -0.55
CTCF-201ENST00000264010 NDUFC2-KCTD14E9PQ53 114 aa11.6□□□□□ -0.55
CTCF-201ENST00000264010 DEFB135Q30KP9 77 aa11.6□□□□□ -0.55
CTCF-201ENST00000264010 UTP20O75691 2785 aaKnown RBP11.6□□□□□ -0.55
CTCF-201ENST00000264010 F8WEM9 126 aa11.6□□□□□ -0.55
CTCF-201ENST00000264010 FASNP49327 2511 aaKnown RBP11.6□□□□□ -0.55
CTCF-201ENST00000264010 FAM240AA0A1B0GVK7 77 aa11.59□□□□□ -0.55
CTCF-201ENST00000264010 DPH3Q96FX2 82 aa11.59□□□□□ -0.55
CTCF-201ENST00000264010 KRTAP1-1Q07627 177 aa11.58□□□□□ -0.56
CTCF-201ENST00000264010 LINC00482Q8N8I6 264 aa11.58□□□□□ -0.56
CTCF-201ENST00000264010 PRO0628Q9UI54 55 aa11.57□□□□□ -0.56
CTCF-201ENST00000264010 FAM222AQ5U5X8 452 aa11.57□□□□□ -0.56
CTCF-201ENST00000264010 XCL1P47992 114 aa11.57□□□□□ -0.56
CTCF-201ENST00000264010 COX6A2Q02221 97 aa11.57□□□□□ -0.56
CTCF-201ENST00000264010 LYRM9A8MSI8 78 aa11.56□□□□□ -0.56
CTCF-201ENST00000264010 DEFB4AO15263 64 aa11.55□□□□□ -0.56
CTCF-201ENST00000264010 LINC00308Q8TCZ7 52 aa11.55□□□□□ -0.56
CTCF-201ENST00000264010 FHL2Q14192 279 aa11.55□□□□□ -0.56
CTCF-201ENST00000264010 ADAMTSL4-AS1Q5T5F5 129 aa11.55□□□□□ -0.56
CTCF-201ENST00000264010 NTM-AS1Q6ZSK4 140 aa11.55□□□□□ -0.56
CTCF-201ENST00000264010 ZANQ9Y493 2812 aa11.55□□□□□ -0.56
CTCF-201ENST00000264010 CXCL5P42830 114 aa11.54□□□□□ -0.56
CTCF-201ENST00000264010 SMIM1B2RUZ4 78 aa11.54□□□□□ -0.56
CTCF-201ENST00000264010 ANGP03950 147 aaKnown RBP11.54□□□□□ -0.56
CTCF-201ENST00000264010 SPART-AS1P0CW21 52 aa11.54□□□□□ -0.56
CTCF-201ENST00000264010 SMIM26A0A096LP01 95 aa11.54□□□□□ -0.56
CTCF-201ENST00000264010 FAM19A1Q7Z5A9 133 aa11.54□□□□□ -0.56
CTCF-201ENST00000264010 AKAP9Q99996 3911 aa11.53□□□□□ -0.56
CTCF-201ENST00000264010 IL17DQ8TAD2 202 aa11.53□□□□□ -0.56
CTCF-201ENST00000264010 H0YGX0 51 aa11.53□□□□□ -0.56
CTCF-201ENST00000264010 IGLV5-45A0A087WSX0 123 aa11.52□□□□□ -0.57
CTCF-201ENST00000264010 NANOS2P60321 138 aaKnown RBP11.52□□□□□ -0.57
CTCF-201ENST00000264010 DEFB105AQ8NG35 78 aa11.5□□□□□ -0.57
CTCF-201ENST00000264010 HECTD1Q9ULT8 2610 aa11.5□□□□□ -0.57
CTCF-201ENST00000264010 GIG44P09565 113 aaPredicted RBP11.5□□□□□ -0.57
CTCF-201ENST00000264010 C19orf73Q9NVV2 129 aa11.5□□□□□ -0.57
CTCF-201ENST00000264010 TRBV7-7A0A0K0K1E9 115 aa11.49□□□□□ -0.57
CTCF-201ENST00000264010 IGLV5-39A0A0G2JS06 123 aa11.49□□□□□ -0.57
CTCF-201ENST00000264010 RMI2Q96E14 147 aa11.49□□□□□ -0.57
CTCF-201ENST00000264010 LINC00846Q9NV44 126 aa11.49□□□□□ -0.57
CTCF-201ENST00000264010 LINC00336Q6ZUF6 198 aa11.48□□□□□ -0.57
CTCF-201ENST00000264010 PSPHP1O15172 72 aa11.48□□□□□ -0.57
CTCF-201ENST00000264010 HELZ2Q9BYK8 2649 aaKnown RBP11.48□□□□□ -0.57
CTCF-201ENST00000264010 FUSP35637 526 aaKnown RBP eCLIP11.48□□□□□ -0.57
CTCF-201ENST00000264010 PMAIP1Q13794 54 aa11.48□□□□□ -0.57
CTCF-201ENST00000264010 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.48□□□□□ -0.57
CTCF-201ENST00000264010 UBR5O95071 2799 aaPredicted RBP11.48□□□□□ -0.57
CTCF-201ENST00000264010 IGLV4-60A0A075B6I1 120 aa11.47□□□□□ -0.57
CTCF-201ENST00000264010 MIFP14174 115 aa11.47□□□□□ -0.57
CTCF-201ENST00000264010 CSNK1G2-AS1Q8NCQ2 148 aa11.47□□□□□ -0.57
CTCF-201ENST00000264010 IGLV10-54A0A075B6I4 117 aa11.46□□□□□ -0.57
CTCF-201ENST00000264010 CHD6Q8TD26 2715 aa11.46□□□□□ -0.57
CTCF-201ENST00000264010 LINC00959A0A1B0GUT2 108 aa11.46□□□□□ -0.58
CTCF-201ENST00000264010 SBSPONQ8IVN8 264 aa11.45□□□□□ -0.58
CTCF-201ENST00000264010 JMJD7-PLA2G4BH0Y9G9 81 aa11.45□□□□□ -0.58
CTCF-201ENST00000264010 SERP1Q9Y6X1 66 aa11.44□□□□□ -0.58
CTCF-201ENST00000264010 IBA57-AS1B1ANH7 110 aa11.44□□□□□ -0.58
CTCF-201ENST00000264010 NIPBLQ6KC79 2804 aaeCLIP11.44□□□□□ -0.58
CTCF-201ENST00000264010 CRYGAP11844 174 aa11.44□□□□□ -0.58
CTCF-201ENST00000264010 LITAFQ99732 161 aa11.44□□□□□ -0.58
CTCF-201ENST00000264010 PLAC8L1A1L4L8 177 aa11.43□□□□□ -0.58
CTCF-201ENST00000264010 LINC00269Q8N2A0 174 aa11.43□□□□□ -0.58
CTCF-201ENST00000264010 APCP25054 2843 aa11.42□□□□□ -0.58
CTCF-201ENST00000264010 A0A087WZ39 114 aa11.42□□□□□ -0.58
CTCF-201ENST00000264010 FAM104AQ969W3 186 aa11.42□□□□□ -0.58
CTCF-201ENST00000264010 NREPQ16612 68 aa11.41□□□□□ -0.58
CTCF-201ENST00000264010 UNC79Q9P2D8 2635 aa11.4□□□□□ -0.58
CTCF-201ENST00000264010 KRTAP10-3P60369 221 aa11.4□□□□□ -0.58
CTCF-201ENST00000264010 X6R8D5 127 aa11.4□□□□□ -0.58
CTCF-201ENST00000264010 REG3AQ06141 175 aa11.4□□□□□ -0.59
CTCF-201ENST00000264010 FAM19A3Q7Z5A8 133 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms