RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TRBV30A0A0K0K1B3 111 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 PLAC8L1A1L4L8 177 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE7O76087 117 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE12FP0CL80 117 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE12GP0CL81 117 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE12IP0CL82 117 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 ATXN8Q156A1 80 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 SH2D6Q7Z4S9 175 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 TEN1Q86WV5 123 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 CSNK1G2-AS1Q8NCQ2 148 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 PPDPFLQ8WWR9 84 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 PPDPFQ9H3Y8 114 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 MXRA5Q9NR99 2828 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 ZFYVE26Q68DK2 2539 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 PRSS2P07478 247 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 COX6CP09669 75 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 SCGB1A1P11684 91 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 FOXI1Q12951 378 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 MRPL23Q16540 153 aaKnown RBP5.17□□□□□ -1.58
VPS13C-206ENST00000558338 LINC00242Q5T6M2 205 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 SPATA25Q9BR10 227 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 CDC42SE2Q9NRR3 84 aa5.17□□□□□ -1.58
VPS13C-206ENST00000558338 TEX15Q9BXT5 2789 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE12HA6NDE8 117 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 TRIAP1O43715 76 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 INSL3P51460 131 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 SFTA2Q6UW10 78 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 NTM-AS1Q6ZSK4 140 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 MTURNQ8N3F0 131 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 KIR2DL5BQ8NHK3 375 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 APCP25054 2843 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 ITPR3Q14573 2671 aa5.16□□□□□ -1.58
VPS13C-206ENST00000558338 ABCA12Q86UK0 2595 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 SMIM9A6NGZ8 99 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 SMIM1B2RUZ4 78 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 LINC00694P0DN24 101 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 LINC00482Q8N8I6 264 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 SIGMAR1Q99720 223 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 WFDC10AQ9H1F0 79 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 ICOSQ9Y6W8 199 aa5.15□□□□□ -1.58
VPS13C-206ENST00000558338 MAP1AP78559 2803 aaPredicted RBP5.15□□□□□ -1.59
VPS13C-206ENST00000558338 TRAV13-1A0A0B4J241 112 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 H7C2G1 150 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 SLC25A20O43772 301 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 COX6A2Q02221 97 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 ADAMTSL4-AS1Q5T5F5 129 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 LINC01600Q96MT4 127 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 Q9H8V8 135 aa5.15□□□□□ -1.59
VPS13C-206ENST00000558338 C9JAW5 83 aa5.14□□□□□ -1.59
VPS13C-206ENST00000558338 FHL2Q14192 279 aa5.14□□□□□ -1.59
VPS13C-206ENST00000558338 C9orf66Q5T8R8 295 aa5.14□□□□□ -1.59
VPS13C-206ENST00000558338 TRBV6-8A0A0A6YYG3 113 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 TMEM262E9PQX1 116 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 F5H768 121 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 RPL13AP40429 203 aaKnown RBP5.13□□□□□ -1.59
VPS13C-206ENST00000558338 MEIG1Q5JSS6 88 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 PRIMA1Q86XR5 153 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 ANKRD29Q8N6D5 301 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 LINC00612Q8N6U2 182 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-206ENST00000558338 MYO9AB2RTY4 2548 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 TRBV10-2A0A0K0K1G8 114 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 H3BT86 120 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 LINC00308Q8TCZ7 52 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 ZNF625Q96I27 306 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-206ENST00000558338 ANK3Q12955 4377 aaKnown RBP5.13□□□□□ -1.59
VPS13C-206ENST00000558338 CENPEQ02224 2701 aa5.13□□□□□ -1.59
VPS13C-206ENST00000558338 LOC100131303A0A0U1RQF7 123 aa5.12□□□□□ -1.59
VPS13C-206ENST00000558338 CHCHD5Q9BSY4 110 aa5.12□□□□□ -1.59
VPS13C-206ENST00000558338 ZNF469Q96JG9 3925 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-206ENST00000558338 LYRM9A8MSI8 78 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 CRLF1O75462 422 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 LY6G6DO95868 133 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 NPC2P61916 151 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 GAGE6Q13070 117 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 COX7B2Q8TF08 81 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 FLNAP21333 2647 aaKnown RBP5.11□□□□□ -1.59
VPS13C-206ENST00000558338 LST1O00453 97 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 APOC4P55056 127 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 KRTAP10-3P60369 221 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 FAM222AQ5U5X8 452 aa5.11□□□□□ -1.59
VPS13C-206ENST00000558338 LINC01561Q8N1V8 128 aa5.1□□□□□ -1.59
VPS13C-206ENST00000558338 UBE2WQ96B02 151 aa5.1□□□□□ -1.59
VPS13C-206ENST00000558338 CARD19Q96LW7 228 aa5.1□□□□□ -1.59
VPS13C-206ENST00000558338 PRO0255Q9UI72 69 aa5.1□□□□□ -1.59
VPS13C-206ENST00000558338 NBPF19A0A087WUL8 3843 aa5.1□□□□□ -1.59
VPS13C-206ENST00000558338 TRAV13-2A0A0B4J235 113 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 A0A1B0GUV1 79 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 DEFB130BP0DP73 79 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 DEFB130AP0DP74 79 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 C5orf47Q569G3 176 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 C2orf82Q6UX34 121 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 DAND5Q8N907 189 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 PDZD2O15018 2839 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 EPG5Q9HCE0 2579 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 WNK1Q9H4A3 2382 aa5.09□□□□□ -1.59
VPS13C-206ENST00000558338 A0A087WZ39 114 aa5.09□□□□□ -1.6
VPS13C-206ENST00000558338 COX7A2LO14548 114 aa5.09□□□□□ -1.6
VPS13C-206ENST00000558338 SMR3AQ99954 134 aa5.09□□□□□ -1.6
VPS13C-206ENST00000558338 SONP18583 2426 aaKnown RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 475.5 ms