RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MRPL23Q16540 153 aaKnown RBP7.7□□□□□ -1.18
CLIP1-213ENST00000540338 SPANXDQ9BXN6 97 aa7.7□□□□□ -1.18
CLIP1-213ENST00000540338 SPANXCQ9NY87 97 aa7.7□□□□□ -1.18
CLIP1-213ENST00000540338 HECTD1Q9ULT8 2610 aa7.69□□□□□ -1.18
CLIP1-213ENST00000540338 TRAV13-2A0A0B4J235 113 aa7.69□□□□□ -1.18
CLIP1-213ENST00000540338 GAGE12HA6NDE8 117 aa7.69□□□□□ -1.18
CLIP1-213ENST00000540338 TEN1Q86WV5 123 aa7.69□□□□□ -1.18
CLIP1-213ENST00000540338 LINC01620Q4KN68 170 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 KIR2DL5BQ8NHK3 375 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 FHL2Q14192 279 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.68□□□□□ -1.18
CLIP1-213ENST00000540338 DCHS2Q6V1P9 2916 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 TEX15Q9BXT5 2789 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 COX6A2Q02221 97 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 ANKRD29Q8N6D5 301 aa7.68□□□□□ -1.18
CLIP1-213ENST00000540338 TRAV8-4A0A0B4J246 113 aa7.67□□□□□ -1.18
CLIP1-213ENST00000540338 FOXI1Q12951 378 aa7.67□□□□□ -1.18
CLIP1-213ENST00000540338 LINC00308Q8TCZ7 52 aa7.67□□□□□ -1.18
CLIP1-213ENST00000540338 NTN5Q8WTR8 489 aaPredicted RBP7.67□□□□□ -1.18
CLIP1-213ENST00000540338 SND1-IT1Q9HBX3 110 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 NTM-AS1Q6ZSK4 140 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 UBE2WQ96B02 151 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 MIFP14174 115 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 MIR7-3HGQ8N6C7 128 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 CARD19Q96LW7 228 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 SMIM1B2RUZ4 78 aa7.66□□□□□ -1.18
CLIP1-213ENST00000540338 TRAV26-1A0A087WT03 109 aa7.65□□□□□ -1.18
CLIP1-213ENST00000540338 TRBV30A0A0K0K1B3 111 aa7.65□□□□□ -1.18
CLIP1-213ENST00000540338 IGLV10-54A0A075B6I4 117 aa7.65□□□□□ -1.18
CLIP1-213ENST00000540338 IGHV4-28A0A0C4DH34 117 aa7.65□□□□□ -1.18
CLIP1-213ENST00000540338 COX7A2LO14548 114 aa7.65□□□□□ -1.18
CLIP1-213ENST00000540338 UTP20O75691 2785 aaKnown RBP7.65□□□□□ -1.19
CLIP1-213ENST00000540338 ADAMTSL4-AS1Q5T5F5 129 aa7.65□□□□□ -1.19
CLIP1-213ENST00000540338 HELZ2Q9BYK8 2649 aaKnown RBP7.65□□□□□ -1.19
CLIP1-213ENST00000540338 SPENQ96T58 3664 aaKnown RBP7.64□□□□□ -1.19
CLIP1-213ENST00000540338 ASH1LQ9NR48 2969 aaKnown RBP7.64□□□□□ -1.19
CLIP1-213ENST00000540338 TRIAP1O43715 76 aa7.64□□□□□ -1.19
CLIP1-213ENST00000540338 BSNQ9UPA5 3926 aa7.64□□□□□ -1.19
CLIP1-213ENST00000540338 TRBV10-2A0A0K0K1G8 114 aa7.64□□□□□ -1.19
CLIP1-213ENST00000540338 CLEC2BQ92478 149 aa7.63□□□□□ -1.19
CLIP1-213ENST00000540338 S100A7L2Q5SY68 101 aa7.63□□□□□ -1.19
CLIP1-213ENST00000540338 LINC00269Q8N2A0 174 aa7.63□□□□□ -1.19
CLIP1-213ENST00000540338 IL17DQ8TAD2 202 aa7.63□□□□□ -1.19
CLIP1-213ENST00000540338 C19orf73Q9NVV2 129 aa7.63□□□□□ -1.19
CLIP1-213ENST00000540338 IGLV4-60A0A075B6I1 120 aa7.62□□□□□ -1.19
CLIP1-213ENST00000540338 LINC00959A0A1B0GUT2 108 aa7.62□□□□□ -1.19
CLIP1-213ENST00000540338 GIG44P09565 113 aaPredicted RBP7.62□□□□□ -1.19
CLIP1-213ENST00000540338 IGLV5-45A0A087WSX0 123 aa7.62□□□□□ -1.19
CLIP1-213ENST00000540338 CSNK1G2-AS1Q8NCQ2 148 aa7.61□□□□□ -1.19
CLIP1-213ENST00000540338 IGLV5-39A0A0G2JS06 123 aa7.61□□□□□ -1.19
CLIP1-213ENST00000540338 IBA57-AS1B1ANH7 110 aa7.61□□□□□ -1.19
CLIP1-213ENST00000540338 H3BT86 120 aa7.61□□□□□ -1.19
CLIP1-213ENST00000540338 ZANQ9Y493 2812 aa7.61□□□□□ -1.19
CLIP1-213ENST00000540338 REG3AQ06141 175 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 TTC32Q5I0X7 151 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 IGHV4-30-4P0DP06 118 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 CHD6Q8TD26 2715 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 CXCL5P42830 114 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 DEFB121Q5J5C9 76 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 KLK12Q9UKR0 248 aa7.6□□□□□ -1.19
CLIP1-213ENST00000540338 A0A1B0GV72 72 aa7.59□□□□□ -1.19
CLIP1-213ENST00000540338 CHCHD10Q8WYQ3 142 aaPredicted RBP7.59□□□□□ -1.19
CLIP1-213ENST00000540338 RNF183Q96D59 192 aa7.59□□□□□ -1.19
CLIP1-213ENST00000540338 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
CLIP1-213ENST00000540338 BAALC-AS2P0C853 105 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 KRTAP10-3P60369 221 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 A0A087WZ39 114 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 GAGE2BQ13066 116 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 GAGE2EQ4V326 116 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 SBSPONQ8IVN8 264 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 GAGE2DQ9UEU5 116 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 X6R8D5 127 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 PLAC8L1A1L4L8 177 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 H0YGX0 51 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 CRYBG3Q68DQ2 2970 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 UNC79Q9P2D8 2635 aa7.58□□□□□ -1.2
CLIP1-213ENST00000540338 OXLD1Q5BKU9 147 aa7.57□□□□□ -1.2
CLIP1-213ENST00000540338 A0A1B0GUV1 79 aa7.57□□□□□ -1.2
CLIP1-213ENST00000540338 INAFM2P0DMQ5 153 aa7.57□□□□□ -1.2
CLIP1-213ENST00000540338 CD164L2Q6UWJ8 174 aa7.57□□□□□ -1.2
CLIP1-213ENST00000540338 SPAG11BQ08648 103 aa7.56□□□□□ -1.2
CLIP1-213ENST00000540338 SHISA2Q6UWI4 295 aa7.56□□□□□ -1.2
CLIP1-213ENST00000540338 UBR5O95071 2799 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-213ENST00000540338 LST1O00453 97 aa7.55□□□□□ -1.2
CLIP1-213ENST00000540338 LELP1Q5T871 98 aa7.55□□□□□ -1.2
CLIP1-213ENST00000540338 LITAFQ99732 161 aa7.55□□□□□ -1.2
CLIP1-213ENST00000540338 PRO0461Q9UI25 63 aa7.55□□□□□ -1.2
CLIP1-213ENST00000540338 CITED1Q99966 193 aa7.55□□□□□ -1.2
CLIP1-213ENST00000540338 IGHV3OR16-9A0A0B4J2B5 98 aa7.54□□□□□ -1.2
CLIP1-213ENST00000540338 APCP25054 2843 aa7.54□□□□□ -1.2
CLIP1-213ENST00000540338 SCGB1A1P11684 91 aa7.54□□□□□ -1.2
CLIP1-213ENST00000540338 Q8IZM0 81 aa7.54□□□□□ -1.2
CLIP1-213ENST00000540338 TEX49A0A1B0GTD5 131 aa7.54□□□□□ -1.2
CLIP1-213ENST00000540338 CCL18P55774 89 aa7.53□□□□□ -1.2
CLIP1-213ENST00000540338 GAGE2AQ6NT46 116 aa7.53□□□□□ -1.2
CLIP1-213ENST00000540338 FAM19A3Q7Z5A8 133 aa7.53□□□□□ -1.2
CLIP1-213ENST00000540338 FAM104AQ969W3 186 aa7.53□□□□□ -1.2
CLIP1-213ENST00000540338 C1orf43Q9BWL3 253 aa7.52□□□□□ -1.21
CLIP1-213ENST00000540338 FLNBO75369 2602 aaKnown RBP7.52□□□□□ -1.21
CLIP1-213ENST00000540338 F8P00451 2351 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms