RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SDHAF1A6NFY7 115 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 A6NIN4 97 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 A8MUU9 505 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 TMEM14DPA8MWL7 114 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 ERC2-IT1O76042 136 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 PPYP01298 95 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 IGKV3-11P04433 115 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 MSMBP08118 114 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 PRB4P10163 310 aaPredicted RBP1.92□□□□□ -2.1
CD44-229ENST00000528672 S100A3P33764 101 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 LINC00315P59091 139 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 ATXN8Q156A1 80 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 KRTAP5-5Q701N2 237 aaPredicted RBP1.92□□□□□ -2.1
CD44-229ENST00000528672 CLECL1Q8IZS7 167 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 U3KQK5 164 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 VCANP13611 3396 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 ADGRB2O60241 1585 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 ABCC8Q09428 1581 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 C5P01031 1676 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 PLCH1Q4KWH8 1693 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 PLXNA1Q9UIW2 1896 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 TTC28Q96AY4 2481 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 LTBP2Q14767 1821 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 ATAD5Q96QE3 1844 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 ITPR3Q14573 2671 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 LOC285556D6RIA3 1793 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 TRAV1-2A0A0B4J238 106 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 LINC01549A6NIU2 74 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 H3BQ85 93 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 CRPP02741 224 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 DEFA4P12838 97 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 KPRPQ5T749 579 aaPredicted RBP1.91□□□□□ -2.1
CD44-229ENST00000528672 SPINT4Q6UDR6 99 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 ZNF818PQ6ZRF7 136 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 ZNF563Q8TA94 476 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 LIMD2Q9BT23 127 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 TMEM14BQ9NUH8 114 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 ABCA2Q9BZC7 2435 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 PCNX2A6NKB5 2137 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 KIAA2026Q5HYC2 2103 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 PKD1L3Q7Z443 1732 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 TNS1Q9HBL0 1735 aaKnown RBP1.91□□□□□ -2.1
CD44-229ENST00000528672 ARID1AO14497 2285 aa1.91□□□□□ -2.1
CD44-229ENST00000528672 NYNRINQ9P2P1 1898 aaKnown RBP1.9□□□□□ -2.1
CD44-229ENST00000528672 IQGAP1P46940 1657 aa1.9□□□□□ -2.1
CD44-229ENST00000528672 CFAP47Q6ZTR5 3102 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 GREB1Q4ZG55 1949 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 CXorf51AA0A1B0GTR3 108 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 LRCOL1A6NCL2 159 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 ZNF815PA8K554 130 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 C17orf98A8MV24 154 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 CHKB-CPT1BH3BT56 60 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 TFF1P04155 84 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 COX6CP09669 75 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 P0C880 135 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 HMGA1P17096 107 aaKnown RBP1.9□□□□□ -2.11
CD44-229ENST00000528672 CD24P25063 80 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 SPINT3P49223 89 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 EDDM3BP56851 147 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 C2orf82Q6UX34 121 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 MUC7Q8TAX7 377 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 CDC42SE2Q9NRR3 84 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 MGAMO43451 1857 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 ZNF407Q9C0G0 2248 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 GCC2Q8IWJ2 1684 aa1.9□□□□□ -2.11
CD44-229ENST00000528672 HECTD1Q9ULT8 2610 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 MED13Q9UHV7 2174 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 ZNF236Q9UL36 1845 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 FMN2Q9NZ56 1722 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 KIAA1549Q9HCM3 1950 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 PLXNA3P51805 1871 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 CPAMD8Q8IZJ3 1885 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 A0A087WSZ3 146 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 TRBV6-8A0A0A6YYG3 113 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 LOC101927531A0A1B0GV80 90 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 RTL8CO15255 209 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 PSCAO43653 123 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 MIR22HGQ0VDD5 57 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 NNATQ16517 81 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 FAM27BQ5VT28 67 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 ATP5EP2Q5VTU8 51 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 CASC2Q6XLA1 102 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
CD44-229ENST00000528672 COL14A1Q05707 1796 aaKnown RBP1.89□□□□□ -2.11
CD44-229ENST00000528672 PCLOQ9Y6V0 5065 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 IGKV1D-37A0A075B6S9 117 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 IGHV3-53P01767 116 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 IFI6P09912 130 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 BAALC-AS2P0C853 105 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 MGST1P10620 155 aaKnown RBP1.88□□□□□ -2.11
CD44-229ENST00000528672 C10orf128Q5T292 105 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 FAM215AQ9Y5M1 114 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 AFDNP55196 1824 aaKnown RBP1.88□□□□□ -2.11
CD44-229ENST00000528672 PLXNA2O75051 1894 aa1.88□□□□□ -2.11
CD44-229ENST00000528672 GOLGB1Q14789 3259 aaKnown RBP1.88□□□□□ -2.11
CD44-229ENST00000528672 LAMB2P55268 1798 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 DLG5Q8TDM6 1919 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 NINQ8N4C6 2090 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 IGKV1D-42A0A075B6H8 117 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 TRBV30A0A0K0K1B3 111 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms