RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 AEBP2Q6ZN18 517 aaPredicted RBP17.24■□□□□ 0.35
CD44-229ENST00000528672 CHIC1Q5VXU3 224 aa16.13■□□□□ 0.17
CD44-229ENST00000528672 SENP3Q9H4L4 574 aaPredicted RBP14.74□□□□□ -0.05
CD44-229ENST00000528672 PHF23Q9BUL5 403 aaPredicted RBP14.53□□□□□ -0.08
CD44-229ENST00000528672 FOXD1Q16676 465 aa13.77□□□□□ -0.21
CD44-229ENST00000528672 POTEDQ86YR6 584 aa13.11□□□□□ -0.31
CD44-229ENST00000528672 MSH5O43196 834 aa12.99□□□□□ -0.33
CD44-229ENST00000528672 PIAS4Q8N2W9 510 aaPredicted RBP12.79□□□□□ -0.36
CD44-229ENST00000528672 PLPPR3Q6T4P5 718 aa12.77□□□□□ -0.37
CD44-229ENST00000528672 PPP6R1Q9UPN7 881 aa12.7□□□□□ -0.38
CD44-229ENST00000528672 ADRA2BP18089 450 aa12.63□□□□□ -0.39
CD44-229ENST00000528672 MAPK8IP2Q13387 824 aaPredicted RBP11.68□□□□□ -0.54
CD44-229ENST00000528672 DMRT2Q9Y5R5 561 aa11.66□□□□□ -0.54
CD44-229ENST00000528672 SCAF1Q9H7N4 1312 aaKnown RBP11.57□□□□□ -0.56
CD44-229ENST00000528672 CACNB1Q02641 598 aaPredicted RBP11.3□□□□□ -0.6
CD44-229ENST00000528672 DCAF8L1A6NGE4 600 aa11.16□□□□□ -0.62
CD44-229ENST00000528672 PPP4R3CPQ6ZMV5 832 aa11.16□□□□□ -0.62
CD44-229ENST00000528672 HOXD11P31277 338 aaPredicted RBP11.13□□□□□ -0.63
CD44-229ENST00000528672 RNF39Q9H2S5 420 aa11.07□□□□□ -0.64
CD44-229ENST00000528672 CNKSR2Q8WXI2 1034 aa11.01□□□□□ -0.65
CD44-229ENST00000528672 RNF216Q9NWF9 866 aaPredicted RBP10.98□□□□□ -0.65
CD44-229ENST00000528672 C1QBPQ07021 282 aaKnown RBP10.9□□□□□ -0.66
CD44-229ENST00000528672 NCBP3Q53F19 620 aaKnown RBP10.82□□□□□ -0.68
CD44-229ENST00000528672 DNAJC5BQ9UF47 199 aa10.82□□□□□ -0.68
CD44-229ENST00000528672 KCNA4P22459 653 aa10.65□□□□□ -0.7
CD44-229ENST00000528672 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-229ENST00000528672 NPM3O75607 178 aaKnown RBP10.57□□□□□ -0.72
CD44-229ENST00000528672 U3KPZ7 1027 aaPredicted RBP10.33□□□□□ -0.76
CD44-229ENST00000528672 DSG3P32926 999 aa10.28□□□□□ -0.76
CD44-229ENST00000528672 SPINK5Q9NQ38 1064 aaPredicted RBP10.27□□□□□ -0.77
CD44-229ENST00000528672 CAPN15O75808 1086 aa10.26□□□□□ -0.77
CD44-229ENST00000528672 POTEHQ6S545 545 aa10.23□□□□□ -0.77
CD44-229ENST00000528672 SLC4A1APQ9BWU0 796 aaKnown RBP10.18□□□□□ -0.78
CD44-229ENST00000528672 EHMT2Q96KQ7 1210 aa10.16□□□□□ -0.78
CD44-229ENST00000528672 SLC4A2P04920 1241 aa10.1□□□□□ -0.79
CD44-229ENST00000528672 TRHP20396 242 aaPredicted RBP10.03□□□□□ -0.8
CD44-229ENST00000528672 APLP2Q06481 763 aa10.03□□□□□ -0.8
CD44-229ENST00000528672 ZNF219Q9P2Y4 722 aaPredicted RBP10.01□□□□□ -0.81
CD44-229ENST00000528672 ABCB7O75027 752 aa9.98□□□□□ -0.81
CD44-229ENST00000528672 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.97□□□□□ -0.81
CD44-229ENST00000528672 HNRNPUL2Q1KMD3 747 aaKnown RBP9.97□□□□□ -0.81
CD44-229ENST00000528672 FOXD4L1Q9NU39 408 aa9.92□□□□□ -0.82
CD44-229ENST00000528672 ZBTB22O15209 634 aa9.9□□□□□ -0.82
CD44-229ENST00000528672 SAMD1Q6SPF0 538 aaPredicted RBP9.9□□□□□ -0.82
CD44-229ENST00000528672 CSRNP3Q8WYN3 585 aa9.9□□□□□ -0.82
CD44-229ENST00000528672 MYCNP04198 464 aaPredicted RBP9.85□□□□□ -0.83
CD44-229ENST00000528672 RBM42Q9BTD8 480 aaKnown RBP9.8□□□□□ -0.84
CD44-229ENST00000528672 POLA2Q14181 598 aa9.72□□□□□ -0.85
CD44-229ENST00000528672 CHRDL2Q6WN34 429 aa9.69□□□□□ -0.86
CD44-229ENST00000528672 ATXN8OSP0DMR3 200 aa9.68□□□□□ -0.86
CD44-229ENST00000528672 AKT1S1Q96B36 256 aa9.53□□□□□ -0.88
CD44-229ENST00000528672 ATF5Q9Y2D1 282 aaPredicted RBP9.51□□□□□ -0.89
CD44-229ENST00000528672 ZBTB12Q9Y330 459 aaPredicted RBP9.5□□□□□ -0.89
CD44-229ENST00000528672 SP7Q8TDD2 431 aaPredicted RBP9.46□□□□□ -0.9
CD44-229ENST00000528672 REM2Q8IYK8 340 aaPredicted RBP9.44□□□□□ -0.9
CD44-229ENST00000528672 PIP4P2Q8N4L2 257 aa9.41□□□□□ -0.9
CD44-229ENST00000528672 OSCARQ8IYS5 282 aa9.4□□□□□ -0.9
CD44-229ENST00000528672 PITPNM1O00562 1244 aa9.33□□□□□ -0.92
CD44-229ENST00000528672 FXR2P51116 673 aaKnown RBP eCLIP9.32□□□□□ -0.92
CD44-229ENST00000528672 HAX1O00165 279 aa9.31□□□□□ -0.92
CD44-229ENST00000528672 SPDYE2BA6NHP3 402 aa9.19□□□□□ -0.94
CD44-229ENST00000528672 SPDYE6P0CI01 402 aa9.19□□□□□ -0.94
CD44-229ENST00000528672 SPDYE2Q495Y8 402 aa9.19□□□□□ -0.94
CD44-229ENST00000528672 FBLN2P98095 1184 aa9.18□□□□□ -0.94
CD44-229ENST00000528672 EVX2Q03828 476 aa9.18□□□□□ -0.94
CD44-229ENST00000528672 PRKAR2AP13861 404 aaKnown RBP9.09□□□□□ -0.95
CD44-229ENST00000528672 SPDYE1Q8NFV5 336 aaPredicted RBP9.09□□□□□ -0.95
CD44-229ENST00000528672 MKRN4PQ13434 485 aaPredicted RBP9.07□□□□□ -0.96
CD44-229ENST00000528672 CLEC11AQ9Y240 323 aa9.07□□□□□ -0.96
CD44-229ENST00000528672 ZNF692Q9BU19 519 aaPredicted RBP9.04□□□□□ -0.96
CD44-229ENST00000528672 C19orf67A6NJJ6 358 aa9.03□□□□□ -0.96
CD44-229ENST00000528672 SSUH2Q9Y2M2 353 aa9.03□□□□□ -0.96
CD44-229ENST00000528672 GABBR2O75899 941 aa8.96□□□□□ -0.98
CD44-229ENST00000528672 CHADLQ6NUI6 762 aa8.92□□□□□ -0.98
CD44-229ENST00000528672 PRR29P0C7W0 189 aa8.9□□□□□ -0.98
CD44-229ENST00000528672 FKBP8Q14318 412 aa8.89□□□□□ -0.99
CD44-229ENST00000528672 PABPN1Q86U42 306 aaKnown RBP eCLIP8.89□□□□□ -0.99
CD44-229ENST00000528672 LHX8Q68G74 356 aa8.88□□□□□ -0.99
CD44-229ENST00000528672 SPDYE4A6NLX3 237 aa8.86□□□□□ -0.99
CD44-229ENST00000528672 PROM2Q8N271 834 aa8.81□□□□□ -1
CD44-229ENST00000528672 FARP1Q9Y4F1 1045 aaPredicted RBP8.79□□□□□ -1
CD44-229ENST00000528672 CD44P16070 742 aaKnown RBP8.78□□□□□ -1
CD44-229ENST00000528672 POTEIP0CG38 1075 aa8.76□□□□□ -1.01
CD44-229ENST00000528672 CLCN6P51797 869 aa8.76□□□□□ -1.01
CD44-229ENST00000528672 STAG3Q9UJ98 1225 aa8.72□□□□□ -1.01
CD44-229ENST00000528672 DCBLD2Q96PD2 775 aa8.65□□□□□ -1.02
CD44-229ENST00000528672 ZNF579Q8NAF0 562 aaKnown RBP8.64□□□□□ -1.03
CD44-229ENST00000528672 CREBZFQ9NS37 354 aa8.62□□□□□ -1.03
CD44-229ENST00000528672 ZRANB1Q9UGI0 708 aa8.62□□□□□ -1.03
CD44-229ENST00000528672 FBXO3Q9UK99 471 aa8.6□□□□□ -1.03
CD44-229ENST00000528672 GALR2O43603 387 aaPredicted RBP8.55□□□□□ -1.04
CD44-229ENST00000528672 RTN4Q9NQC3 1192 aaKnown RBP8.55□□□□□ -1.04
CD44-229ENST00000528672 PAK3O75914 559 aaPredicted RBP8.49□□□□□ -1.05
CD44-229ENST00000528672 OTUD5Q96G74 571 aa8.49□□□□□ -1.05
CD44-229ENST00000528672 PLSCR2Q9NRY7 297 aa8.49□□□□□ -1.05
CD44-229ENST00000528672 POTEB2H3BUK9 544 aa8.47□□□□□ -1.05
CD44-229ENST00000528672 PHF12Q96QT6 1004 aa8.47□□□□□ -1.05
CD44-229ENST00000528672 PLEKHG5O94827 1062 aa8.46□□□□□ -1.06
CD44-229ENST00000528672 NPM1P06748 294 aaKnown RBP eCLIP8.45□□□□□ -1.06
CD44-229ENST00000528672 MNX1P50219 401 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms