RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 GEMIN7Q9H840 131 aaKnown RBP11.93□□□□□ -0.5
LIMK1-203ENST00000435201 TRBV6-4A0A1B0GX49 114 aa11.92□□□□□ -0.5
LIMK1-203ENST00000435201 INSL3P51460 131 aa11.92□□□□□ -0.5
LIMK1-203ENST00000435201 TIRAPP58753 221 aa11.92□□□□□ -0.5
LIMK1-203ENST00000435201 PGPEP1Q9NXJ5 209 aa11.92□□□□□ -0.5
LIMK1-203ENST00000435201 CSDC2Q9Y534 153 aaKnown RBP11.92□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE12JA6NER3 117 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE4Q13068 117 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE5Q13069 117 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE13Q4V321 117 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 VSIG2Q96IQ7 327 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 JMJD1CQ15652 2540 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 SBSPONQ8IVN8 264 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 C10orf126Q8N4M7 172 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 GTSF1LQ9H1H1 148 aa11.91□□□□□ -0.5
LIMK1-203ENST00000435201 HECTD1Q9ULT8 2610 aa11.9□□□□□ -0.5
LIMK1-203ENST00000435201 IGLV5-45A0A087WSX0 123 aa11.9□□□□□ -0.5
LIMK1-203ENST00000435201 A0A0J9YXY3 114 aa11.9□□□□□ -0.5
LIMK1-203ENST00000435201 K7ERU9 68 aa11.9□□□□□ -0.5
LIMK1-203ENST00000435201 NIPBLQ6KC79 2804 aaeCLIP11.9□□□□□ -0.5
LIMK1-203ENST00000435201 TRAV8-3A0A0A6YYJ7 113 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 RBX1P62877 108 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 NTM-AS1Q6ZSK4 140 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 CBY1Q9Y3M2 126 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 APOMO95445 188 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 HERVK_113P63121 156 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 C9orf66Q5T8R8 295 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 FAM19A3Q7Z5A8 133 aa11.89□□□□□ -0.51
LIMK1-203ENST00000435201 TRGV4A0A0C4DH28 118 aa11.88□□□□□ -0.51
LIMK1-203ENST00000435201 SPINK8P0C7L1 97 aa11.88□□□□□ -0.51
LIMK1-203ENST00000435201 LINC00694P0DN24 101 aa11.88□□□□□ -0.51
LIMK1-203ENST00000435201 RPL24P83731 157 aaKnown RBP11.88□□□□□ -0.51
LIMK1-203ENST00000435201 TSPAN13O95857 204 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 NDUFA12Q9UI09 145 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 H7C423 109 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 CFC1BP0CG36 223 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 CFC1P0CG37 223 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 LYRM7Q5U5X0 104 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 TMEM243Q9BU79 118 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 CDKN2A-AS1Q9UH64 79 aa11.87□□□□□ -0.51
LIMK1-203ENST00000435201 F8W1H4 67 aa11.86□□□□□ -0.51
LIMK1-203ENST00000435201 UBE2L6O14933 153 aa11.86□□□□□ -0.51
LIMK1-203ENST00000435201 ZFAND6Q6FIF0 208 aa11.86□□□□□ -0.51
LIMK1-203ENST00000435201 OTOGQ6ZRI0 2925 aa11.86□□□□□ -0.51
LIMK1-203ENST00000435201 FHL2Q14192 279 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 KIR2DL5BQ8NHK3 375 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 CRLF1O75462 422 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 LINC00242Q5T6M2 205 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 MUSTN1Q8IVN3 82 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 TMEM101Q96IK0 257 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 CDC42SE2Q9NRR3 84 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 PRO1854Q9UHT4 67 aa11.85□□□□□ -0.51
LIMK1-203ENST00000435201 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.84□□□□□ -0.51
LIMK1-203ENST00000435201 A4D1N5 150 aa11.84□□□□□ -0.51
LIMK1-203ENST00000435201 H3BMG7 143 aa11.84□□□□□ -0.51
LIMK1-203ENST00000435201 LITAFQ99732 161 aa11.84□□□□□ -0.51
LIMK1-203ENST00000435201 SPANXDQ9BXN6 97 aa11.84□□□□□ -0.51
LIMK1-203ENST00000435201 SPANXCQ9NY87 97 aa11.84□□□□□ -0.51
LIMK1-203ENST00000435201 A0A0B4J2C4 111 aa11.83□□□□□ -0.52
LIMK1-203ENST00000435201 LOC100131303A0A0U1RQF7 123 aa11.83□□□□□ -0.52
LIMK1-203ENST00000435201 SMIM9A6NGZ8 99 aa11.83□□□□□ -0.52
LIMK1-203ENST00000435201 RNF151Q2KHN1 245 aa11.83□□□□□ -0.52
LIMK1-203ENST00000435201 LINC00612Q8N6U2 182 aa11.83□□□□□ -0.52
LIMK1-203ENST00000435201 IGLV5-39A0A0G2JS06 123 aa11.82□□□□□ -0.52
LIMK1-203ENST00000435201 TIMM17BO60830 172 aa11.82□□□□□ -0.52
LIMK1-203ENST00000435201 COX6A2Q02221 97 aa11.82□□□□□ -0.52
LIMK1-203ENST00000435201 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.82□□□□□ -0.52
LIMK1-203ENST00000435201 NOTCH3Q9UM47 2321 aa11.82□□□□□ -0.52
LIMK1-203ENST00000435201 NSD1Q96L73 2696 aaPredicted RBP11.82□□□□□ -0.52
LIMK1-203ENST00000435201 LOC107984156A0A0G2JMH3 177 aa11.81□□□□□ -0.52
LIMK1-203ENST00000435201 NDUFA1O15239 70 aa11.81□□□□□ -0.52
LIMK1-203ENST00000435201 ARL17AQ8IVW1 177 aa11.81□□□□□ -0.52
LIMK1-203ENST00000435201 A8MZ25 164 aa11.8□□□□□ -0.52
LIMK1-203ENST00000435201 MIAQ16674 131 aa11.8□□□□□ -0.52
LIMK1-203ENST00000435201 X6R8D5 127 aa11.8□□□□□ -0.52
LIMK1-203ENST00000435201 C2CD3Q4AC94 2353 aa11.8□□□□□ -0.52
LIMK1-203ENST00000435201 TRAV13-1A0A0B4J241 112 aa11.8□□□□□ -0.52
LIMK1-203ENST00000435201 CITED1Q99966 193 aa11.8□□□□□ -0.52
LIMK1-203ENST00000435201 NOTCH2Q04721 2471 aa11.79□□□□□ -0.52
LIMK1-203ENST00000435201 TRBV6-8A0A0A6YYG3 113 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 DEFB130BP0DP73 79 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 DEFB130AP0DP74 79 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 VPS25Q9BRG1 176 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 PRO0461Q9UI25 63 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 TRBV20-1A0A075B6N2 111 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 G3V4G9 280 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 IGHV3-33P01772 117 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 ADAMTSL4-AS1Q5T5F5 129 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 SPATA3Q8NHX4 192 aa11.78□□□□□ -0.52
LIMK1-203ENST00000435201 SMIM1B2RUZ4 78 aa11.77□□□□□ -0.53
LIMK1-203ENST00000435201 PRSS2P07478 247 aa11.77□□□□□ -0.53
LIMK1-203ENST00000435201 PSMB2P49721 201 aa11.77□□□□□ -0.53
LIMK1-203ENST00000435201 WFDC2Q14508 124 aa11.77□□□□□ -0.53
LIMK1-203ENST00000435201 RNF183Q96D59 192 aa11.77□□□□□ -0.53
LIMK1-203ENST00000435201 ERG28Q9UKR5 140 aa11.77□□□□□ -0.53
LIMK1-203ENST00000435201 EIF4EBP3O60516 100 aaPredicted RBP11.76□□□□□ -0.53
LIMK1-203ENST00000435201 IFITM1P13164 125 aa11.76□□□□□ -0.53
LIMK1-203ENST00000435201 APOC4P55056 127 aa11.76□□□□□ -0.53
LIMK1-203ENST00000435201 CIRBPQ14011 172 aaKnown RBP11.76□□□□□ -0.53
LIMK1-203ENST00000435201 SFTA2Q6UW10 78 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms