RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C EFT1P32324 842 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C SMI1P32566 505 aa6.3□□□□□ -1.4
DEF1YKL054C MTC7P32633 139 aa6.3□□□□□ -1.4
DEF1YKL054C SRO77P38163 1010 aa6.3□□□□□ -1.4
DEF1YKL054C SMF1P38925 575 aa6.3□□□□□ -1.4
DEF1YKL054C TIF4631P39935 952 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C BUD16P39988 312 aa6.3□□□□□ -1.4
DEF1YKL054C MET18P40469 1032 aa6.3□□□□□ -1.4
DEF1YKL054C LEM3P42838 414 aa6.3□□□□□ -1.4
DEF1YKL054C RCR2Q03446 210 aaKnown RBP6.3□□□□□ -1.4
DEF1YKL054C YAP6Q03935 383 aa6.3□□□□□ -1.4
DEF1YKL054C PHO92Q06390 306 aa6.3□□□□□ -1.4
DEF1YKL054C ENT4Q07872 247 aa6.3□□□□□ -1.4
DEF1YKL054C YOR022CQ12204 715 aa6.3□□□□□ -1.4
DEF1YKL054C YBR126W-AQ8TGU7 68 aa6.3□□□□□ -1.4
DEF1YKL054C ARP2P32381 391 aaKnown RBP6.29□□□□□ -1.4
DEF1YKL054C MIC60P36112 540 aa6.29□□□□□ -1.4
DEF1YKL054C EFM4P40516 257 aa6.29□□□□□ -1.4
DEF1YKL054C TCB2P48231 1178 aa6.29□□□□□ -1.4
DEF1YKL054C ART5P53244 586 aaKnown RBP6.29□□□□□ -1.4
DEF1YKL054C MMR1Q06324 491 aa6.29□□□□□ -1.4
DEF1YKL054C YPL277CQ08989 487 aa6.29□□□□□ -1.4
DEF1YKL054C COX17Q12287 69 aa6.29□□□□□ -1.4
DEF1YKL054C CDC24P11433 854 aaPredicted RBP6.29□□□□□ -1.4
DEF1YKL054C OM45P16547 393 aa6.29□□□□□ -1.4
DEF1YKL054C HEL1P36113 551 aa6.29□□□□□ -1.4
DEF1YKL054C CCT7P42943 550 aaKnown RBP6.29□□□□□ -1.4
DEF1YKL054C GYL1Q04322 720 aa6.29□□□□□ -1.4
DEF1YKL054C RCL1Q08096 367 aaPredicted RBP6.29□□□□□ -1.4
DEF1YKL054C HUA2Q12134 243 aa6.29□□□□□ -1.4
DEF1YKL054C GPR1Q12361 961 aa6.29□□□□□ -1.4
DEF1YKL054C NAR1P23503 491 aaKnown RBP6.28□□□□□ -1.4
DEF1YKL054C MRPL36P36531 177 aa6.28□□□□□ -1.4
DEF1YKL054C HSM3P38348 480 aa6.28□□□□□ -1.4
DEF1YKL054C FSH1P38777 243 aaKnown RBP6.28□□□□□ -1.4
DEF1YKL054C MRX1P40050 688 aa6.28□□□□□ -1.4
DEF1YKL054C CEP3P40969 608 aa6.28□□□□□ -1.4
DEF1YKL054C YFL066CP43538 392 aa6.28□□□□□ -1.4
DEF1YKL054C YJL045WP47052 634 aa6.28□□□□□ -1.4
DEF1YKL054C FOL2P51601 243 aaKnown RBP6.28□□□□□ -1.4
DEF1YKL054C PEF1P53238 335 aa6.28□□□□□ -1.4
DEF1YKL054C SKG3Q06315 1026 aa6.28□□□□□ -1.4
DEF1YKL054C BMS1Q08965 1183 aaKnown RBP6.28□□□□□ -1.4
DEF1YKL054C SPE3Q12074 293 aaKnown RBP6.28□□□□□ -1.4
DEF1YKL054C URA3P03962 267 aa6.27□□□□□ -1.4
DEF1YKL054C NIP1P32497 812 aaKnown RBP6.27□□□□□ -1.4
DEF1YKL054C ADH5P38113 351 aaKnown RBP6.27□□□□□ -1.4
DEF1YKL054C OSW5P40219 148 aa6.27□□□□□ -1.4
DEF1YKL054C ROK1P45818 564 aaPredicted RBP6.27□□□□□ -1.4
DEF1YKL054C MNP1P53163 194 aaPredicted RBP6.27□□□□□ -1.4
DEF1YKL054C YKR011CQ02209 353 aa6.27□□□□□ -1.4
DEF1YKL054C CRD1Q07560 283 aa6.27□□□□□ -1.4
DEF1YKL054C ATG11Q12527 1178 aa6.27□□□□□ -1.4
DEF1YKL054C YOR111WQ99210 232 aa6.27□□□□□ -1.4
DEF1YKL054C CBS1P14066 229 aa6.27□□□□□ -1.41
DEF1YKL054C ARG1P22768 420 aa6.27□□□□□ -1.41
DEF1YKL054C NIP100P33420 868 aa6.27□□□□□ -1.41
DEF1YKL054C ZIM17P42844 174 aa6.27□□□□□ -1.41
DEF1YKL054C RPN14P53196 417 aa6.27□□□□□ -1.41
DEF1YKL054C GPD1Q00055 391 aaKnown RBP6.27□□□□□ -1.41
DEF1YKL054C RAD30Q04049 632 aa6.27□□□□□ -1.41
DEF1YKL054C RBA50Q04418 439 aa6.27□□□□□ -1.41
DEF1YKL054C RCO1Q04779 684 aa6.27□□□□□ -1.41
DEF1YKL054C GAD1Q04792 585 aa6.27□□□□□ -1.41
DEF1YKL054C AVO1Q08236 1176 aa6.27□□□□□ -1.41
DEF1YKL054C GPM3Q12326 303 aa6.27□□□□□ -1.41
DEF1YKL054C ERS1P17261 260 aa6.26□□□□□ -1.41
DEF1YKL054C PWP1P21304 576 aaKnown RBP6.26□□□□□ -1.41
DEF1YKL054C RFA1P22336 621 aaKnown RBP6.26□□□□□ -1.41
DEF1YKL054C PRP28P23394 588 aa6.26□□□□□ -1.41
DEF1YKL054C YPT7P32939 208 aa6.26□□□□□ -1.41
DEF1YKL054C BFR1P38934 470 aaKnown RBP RIP-Chip data6.26□□□□□ -1.41 RIP-Chip
DEF1YKL054C MET28P40573 187 aa6.26□□□□□ -1.41
DEF1YKL054C ENP2P48234 707 aaKnown RBP6.26□□□□□ -1.41
DEF1YKL054C CSL4P53859 292 aaPredicted RBP6.26□□□□□ -1.41
DEF1YKL054C EOS1P53938 366 aa6.26□□□□□ -1.41
DEF1YKL054C YMR210WQ03649 449 aa6.26□□□□□ -1.41
DEF1YKL054C GIS4Q04233 774 aa6.26□□□□□ -1.41
DEF1YKL054C XYL2Q07993 356 aa6.26□□□□□ -1.41
DEF1YKL054C ICL2Q12031 575 aa6.26□□□□□ -1.41
DEF1YKL054C CET1O13297 549 aaPredicted RBP6.26□□□□□ -1.41
DEF1YKL054C PRC1P00729 532 aa6.26□□□□□ -1.41
DEF1YKL054C LAT1P12695 482 aaKnown RBP6.26□□□□□ -1.41
DEF1YKL054C CWH43P25618 953 aa6.26□□□□□ -1.41
DEF1YKL054C SAP190P36123 1033 aa6.26□□□□□ -1.41
DEF1YKL054C GID8P40208 455 aa6.26□□□□□ -1.41
DEF1YKL054C AGX1P43567 385 aa6.26□□□□□ -1.41
DEF1YKL054C AIP1P46680 615 aaKnown RBP6.26□□□□□ -1.41
DEF1YKL054C SHE4P51534 789 aa6.26□□□□□ -1.41
DEF1YKL054C FMP45Q07651 309 aa6.26□□□□□ -1.41
DEF1YKL054C PML1Q07930 204 aaPredicted RBP6.26□□□□□ -1.41
DEF1YKL054C RCN2Q12044 265 aa6.26□□□□□ -1.41
DEF1YKL054C RPD3P32561 433 aa6.25□□□□□ -1.41
DEF1YKL054C YSC84P32793 468 aa6.25□□□□□ -1.41
DEF1YKL054C SUR1P33300 382 aa6.25□□□□□ -1.41
DEF1YKL054C SWH1P35845 1188 aa6.25□□□□□ -1.41
DEF1YKL054C RMA1P36001 430 aaKnown RBP6.25□□□□□ -1.41
DEF1YKL054C YKR075CP36155 307 aa6.25□□□□□ -1.41
DEF1YKL054C RGI2P40188 164 aa6.25□□□□□ -1.41
DEF1YKL054C COG1P53079 417 aa6.25□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 33.5 ms