RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W TUF1P02992 437 aaKnown RBP3.81□□□□□ -1.8
UPF3YGR072W VAS1P07806 1104 aaKnown RBP3.81□□□□□ -1.8
UPF3YGR072W MSM1P22438 575 aa3.81□□□□□ -1.8
UPF3YGR072W SSH4P32343 579 aa3.81□□□□□ -1.8
UPF3YGR072W MSS1P32559 526 aaPredicted RBP3.81□□□□□ -1.8
UPF3YGR072W EAF5P39995 279 aa3.81□□□□□ -1.8
UPF3YGR072W SCS2P40075 244 aaKnown RBP3.81□□□□□ -1.8
UPF3YGR072W YIL077CP40508 320 aa3.81□□□□□ -1.8
UPF3YGR072W BUD8P41698 603 aa3.81□□□□□ -1.8
UPF3YGR072W IML2P47031 731 aa3.81□□□□□ -1.8
UPF3YGR072W PUS4P48567 403 aaKnown RBP3.81□□□□□ -1.8
UPF3YGR072W MDR1P53258 950 aa3.81□□□□□ -1.8
UPF3YGR072W DIP5P53388 608 aa3.81□□□□□ -1.8
UPF3YGR072W SPO1P53541 631 aa3.81□□□□□ -1.8
UPF3YGR072W CEG1Q01159 459 aaPredicted RBP3.81□□□□□ -1.8
UPF3YGR072W HLR1Q04429 423 aa3.81□□□□□ -1.8
UPF3YGR072W TMA64Q04600 565 aaKnown RBP3.81□□□□□ -1.8
UPF3YGR072W ARG7Q04728 441 aa3.81□□□□□ -1.8
UPF3YGR072W TRI1Q05024 226 aa3.81□□□□□ -1.8
UPF3YGR072W HIM1Q06674 414 aa3.81□□□□□ -1.8
UPF3YGR072W AIM41Q12032 185 aa3.81□□□□□ -1.8
UPF3YGR072W SEC18P18759 758 aaKnown RBP3.8□□□□□ -1.8
UPF3YGR072W IME1P21190 360 aa3.8□□□□□ -1.8
UPF3YGR072W CWH43P25618 953 aa3.8□□□□□ -1.8
UPF3YGR072W NTH1P32356 751 aa3.8□□□□□ -1.8
UPF3YGR072W PSA1P41940 361 aaKnown RBP3.8□□□□□ -1.8
UPF3YGR072W PEF1P53238 335 aa3.8□□□□□ -1.8
UPF3YGR072W SNF12P53628 566 aa3.8□□□□□ -1.8
UPF3YGR072W NGL2Q03264 515 aaKnown RBP3.8□□□□□ -1.8
UPF3YGR072W BLS1Q06071 122 aa3.8□□□□□ -1.8
UPF3YGR072W VPS36Q06696 566 aa3.8□□□□□ -1.8
UPF3YGR072W BRE1Q07457 700 aaKnown RBP3.8□□□□□ -1.8
UPF3YGR072W AI5_ALPHAQ9ZZX1 630 aa3.8□□□□□ -1.8
UPF3YGR072W SSM4P40318 1319 aa3.79□□□□□ -1.8
UPF3YGR072W CBP3P21560 335 aa3.79□□□□□ -1.8
UPF3YGR072W PRE4P30657 266 aa3.79□□□□□ -1.8
UPF3YGR072W YPT7P32939 208 aa3.79□□□□□ -1.8
UPF3YGR072W APM3P38153 483 aa3.79□□□□□ -1.8
UPF3YGR072W YLF2P38746 405 aa3.79□□□□□ -1.8
UPF3YGR072W SWD1P39706 426 aa3.79□□□□□ -1.8
UPF3YGR072W RCR2Q03446 210 aaKnown RBP3.79□□□□□ -1.8
UPF3YGR072W UFO1Q04511 668 aa3.79□□□□□ -1.8
UPF3YGR072W MIS1P09440 975 aaKnown RBP3.78□□□□□ -1.8
UPF3YGR072W SEC12P11655 471 aa3.78□□□□□ -1.8
UPF3YGR072W APA1P16550 321 aaKnown RBP3.78□□□□□ -1.8
UPF3YGR072W AAD3P25612 363 aa3.78□□□□□ -1.8
UPF3YGR072W MRPL36P36531 177 aa3.78□□□□□ -1.8
UPF3YGR072W PRM2P40534 656 aa3.78□□□□□ -1.8
UPF3YGR072W MNT2P53059 558 aa3.78□□□□□ -1.8
UPF3YGR072W YFT2Q06676 274 aa3.78□□□□□ -1.8
UPF3YGR072W ADH4P10127 382 aa3.77□□□□□ -1.81
UPF3YGR072W HMG2P12684 1045 aa3.77□□□□□ -1.81
UPF3YGR072W EXO84P38261 753 aa3.77□□□□□ -1.81
UPF3YGR072W COS111P38308 924 aa3.77□□□□□ -1.81
UPF3YGR072W RAD26P40352 1085 aa3.77□□□□□ -1.81
UPF3YGR072W MAD2P40958 196 aa3.77□□□□□ -1.81
UPF3YGR072W MAD3P47074 515 aa3.77□□□□□ -1.81
UPF3YGR072W YGL117WP53133 265 aa3.77□□□□□ -1.81
UPF3YGR072W YML131WQ03102 365 aa3.77□□□□□ -1.81
UPF3YGR072W ORM2Q06144 216 aa3.77□□□□□ -1.81
UPF3YGR072W CRD1Q07560 283 aa3.77□□□□□ -1.81
UPF3YGR072W RTK1Q12100 620 aaPredicted RBP3.77□□□□□ -1.81
UPF3YGR072W DBP10Q12389 995 aaKnown RBP3.77□□□□□ -1.81
UPF3YGR072W XRS2P33301 854 aa3.76□□□□□ -1.81
UPF3YGR072W RMA1P36001 430 aaKnown RBP3.76□□□□□ -1.81
UPF3YGR072W ELF1P36053 145 aa3.76□□□□□ -1.81
UPF3YGR072W PSY4P38193 441 aa3.76□□□□□ -1.81
UPF3YGR072W VID27P40157 782 aa3.76□□□□□ -1.81
UPF3YGR072W RPT2P40327 437 aaKnown RBP3.76□□□□□ -1.81
UPF3YGR072W YNR071CP53757 342 aa3.76□□□□□ -1.81
UPF3YGR072W MRPL13Q02204 264 aa3.76□□□□□ -1.81
UPF3YGR072W FDC1Q03034 503 aa3.76□□□□□ -1.81
UPF3YGR072W ARA2Q04212 335 aa3.76□□□□□ -1.81
UPF3YGR072W YMR018WQ04364 514 aa3.76□□□□□ -1.81
UPF3YGR072W YCG1Q06680 1035 aa3.76□□□□□ -1.81
UPF3YGR072W OPY2Q06810 360 aa3.76□□□□□ -1.81
UPF3YGR072W IZH3Q07959 543 aa3.76□□□□□ -1.81
UPF3YGR072W DIN7Q12086 430 aa3.76□□□□□ -1.81
UPF3YGR072W NUC1P08466 329 aa3.75□□□□□ -1.81
UPF3YGR072W PCK1P10963 549 aa3.75□□□□□ -1.81
UPF3YGR072W POL3P15436 1097 aa3.75□□□□□ -1.81
UPF3YGR072W MCM3P24279 971 aaKnown RBP3.75□□□□□ -1.81
UPF3YGR072W GFD2P25370 566 aaKnown RBP3.75□□□□□ -1.81
UPF3YGR072W RER1P25560 188 aa3.75□□□□□ -1.81
UPF3YGR072W ECM32P32644 1121 aaKnown RBP3.75□□□□□ -1.81
UPF3YGR072W SMK1P41808 388 aa3.75□□□□□ -1.81
UPF3YGR072W CPR6P53691 371 aaKnown RBP3.75□□□□□ -1.81
UPF3YGR072W CPR8P53728 308 aa3.75□□□□□ -1.81
UPF3YGR072W GIS2P53849 153 aaKnown RBP RIP-Chip data3.75□□□□□ -1.81not detected
UPF3YGR072W MOT3P54785 490 aaKnown RBP3.75□□□□□ -1.81
UPF3YGR072W IWR1Q07532 353 aaPredicted RBP3.75□□□□□ -1.81
UPF3YGR072W AAD4Q07747 329 aa3.75□□□□□ -1.81
UPF3YGR072W URA3P03962 267 aa3.74□□□□□ -1.81
UPF3YGR072W LEU2P04173 364 aaPredicted RBP3.74□□□□□ -1.81
UPF3YGR072W CTT1P06115 562 aa3.74□□□□□ -1.81
UPF3YGR072W SIR1P21691 654 aa3.74□□□□□ -1.81
UPF3YGR072W MTC7P32633 139 aa3.74□□□□□ -1.81
UPF3YGR072W RPT3P33298 428 aaKnown RBP3.74□□□□□ -1.81
UPF3YGR072W STT3P39007 718 aaKnown RBP3.74□□□□□ -1.81
UPF3YGR072W YEL025CP39991 1188 aa3.74□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms