RNA–Protein interactions for RNA: YGL244W

RTF1, Transcript of Subunit of RNAPII-associated chromatin remodeling Paf1 complex, yeast

Gene RTF1, Length 1,677 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTF1	YGL244W	YER156C	P40093	338 aa	Known RBP	11.67	□□□□□ -0.54
RTF1	YGL244W	TGL3	P40308	642 aa		11.67	□□□□□ -0.54
RTF1	YGL244W	RRN7	P40992	514 aa		11.67	□□□□□ -0.54
RTF1	YGL244W	FMP32	P43557	207 aa		11.67	□□□□□ -0.54
RTF1	YGL244W	VTC4	P47075	721 aa		11.67	□□□□□ -0.54
RTF1	YGL244W	ELP3	Q02908	557 aa	Known RBP	11.67	□□□□□ -0.54
RTF1	YGL244W	TAF11	Q04226	346 aa		11.67	□□□□□ -0.54
RTF1	YGL244W	SPC2	Q04969	178 aa		11.67	□□□□□ -0.54
RTF1	YGL244W	DBP10	Q12389	995 aa	Known RBP	11.67	□□□□□ -0.54
RTF1	YGL244W	SEM1	O94742	89 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	RPS9B	P05755	195 aa	Known RBP	11.66	□□□□□ -0.54
RTF1	YGL244W	FBP1	P09201	348 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	CNA1	P23287	553 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	PER1	P25625	357 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	ZIP1	P31111	875 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	YMC2	P38087	329 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	MMS4	P38257	691 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	SHU2	P38957	223 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	SNL1	P40548	159 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	MND1	P53102	219 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	YLR455W	Q06188	304 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	YVC1	Q12324	675 aa		11.66	□□□□□ -0.54
RTF1	YGL244W	TSR4	P25040	408 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	DPH2	P32461	534 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	UTR4	P32626	227 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	SPC42	P36094	363 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	CCT7	P42943	550 aa	Known RBP	11.65	□□□□□ -0.54
RTF1	YGL244W	BNA3	P47039	444 aa	Known RBP	11.65	□□□□□ -0.54
RTF1	YGL244W	YJL007C	P47080	104 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	DAN4	P47179	1161 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	TRF5	P48561	642 aa	Known RBP	11.65	□□□□□ -0.54
RTF1	YGL244W	RBL2	P48606	106 aa	Known RBP	11.65	□□□□□ -0.54
RTF1	YGL244W	YNL058C	P53947	316 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	YMR160W	Q03823	816 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	ECM7	Q06200	448 aa		11.65	□□□□□ -0.54
RTF1	YGL244W	SGT2	Q12118	346 aa	Known RBP	11.65	□□□□□ -0.54
RTF1	YGL244W	SUI3	P09064	285 aa	Known RBP	11.65	□□□□□ -0.55
RTF1	YGL244W	ASP3-2	P0CX77	362 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	ASP3-3	P0CX78	362 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	ASP3-4	P0CX79	362 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	ASP3-1	P0CZ17	362 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	VAC17	P25591	423 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	PHA2	P32452	334 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	HXT3	P32466	567 aa	Known RBP	11.65	□□□□□ -0.55
RTF1	YGL244W	TIF3	P34167	436 aa	Known RBP	11.65	□□□□□ -0.55
RTF1	YGL244W	REG2	P38232	338 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	FES1	P38260	290 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	BZZ1	P38822	633 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	YFL012W	P43580	148 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	RSC8	P43609	557 aa	Known RBP	11.65	□□□□□ -0.55
RTF1	YGL244W	SHE4	P51534	789 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	YKR005C	Q02203	525 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	GPI13	Q07830	1017 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	APC9	Q12107	265 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	VPS5	Q92331	675 aa		11.65	□□□□□ -0.55
RTF1	YGL244W	RIB7	P33312	244 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	NUF2	P33895	451 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	NOP4	P37838	685 aa	Known RBP	11.64	□□□□□ -0.55
RTF1	YGL244W	RDH54	P38086	958 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	SEC31	P38968	1273 aa	Known RBP	11.64	□□□□□ -0.55
RTF1	YGL244W	SIT1	P39980	628 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	INP51	P40559	946 aa	Known RBP	11.64	□□□□□ -0.55
RTF1	YGL244W	YPR003C	P53394	754 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	CIR2	Q08822	631 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	YLL058W	Q12198	575 aa		11.64	□□□□□ -0.55
RTF1	YGL244W	CAR1	P00812	333 aa	Known RBP	11.63	□□□□□ -0.55
RTF1	YGL244W	GAL2	P13181	574 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	GAP1	P19145	602 aa	Predicted RBP	11.63	□□□□□ -0.55
RTF1	YGL244W	TKL1	P23254	680 aa	Known RBP	11.63	□□□□□ -0.55
RTF1	YGL244W	CLB2	P24869	491 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	SRB2	P34162	210 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	CRP1	P38845	465 aa	Known RBP	11.63	□□□□□ -0.55
RTF1	YGL244W	MND2	P40577	368 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	FAR10	Q06001	478 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	TPO1	Q07824	586 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	FMP25	Q08023	583 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	YEL077C	Q3E7X8	1277 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	MOT1	P32333	1867 aa		11.63	□□□□□ -0.55
RTF1	YGL244W	GID7	P25569	745 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	HRR25	P29295	494 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	CCR4	P31384	837 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	SRL3	P36167	246 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	OTU2	P38747	307 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	RPT2	P40327	437 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	UBP7	P40453	1071 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	RPA14	P50106	137 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	SKI8	Q02793	397 aa	Predicted RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	NAN1	Q02931	896 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	RKM2	Q03942	479 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	THI21	Q08975	551 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	IZH4	Q99393	312 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	ERR1	P0CX10	437 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	ERR2	P0CX11	437 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	YPK1	P12688	680 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	11.62	□□□□□ -0.55	not detected
RTF1	YGL244W	UTP9	P38882	575 aa	Known RBP	11.62	□□□□□ -0.55
RTF1	YGL244W	DSE1	P40077	573 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	HPM1	P40481	377 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	ERR3	P42222	437 aa		11.62	□□□□□ -0.55
RTF1	YGL244W	ASG7	P46993	209 aa		11.62	□□□□□ -0.55

Retrieved 100 of 5,963 RNA–protein pairs in 33.8 ms