RNA–Protein interactions for RNA: YBL067C

UBP13, Transcript of Ubiquitin-specific protease that cleaves Ub-protein fusions, yeast

Gene UBP13, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP13	YBL067C	KIP1	P28742	1111 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	7.36	□□□□□ -1.23	not detected
UBP13	YBL067C	ALG3	P38179	458 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	FUN12	P39730	1002 aa	Known RBP	7.36	□□□□□ -1.23
UBP13	YBL067C	MET18	P40469	1032 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	YGL242C	P53066	181 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	LRS4	Q04087	347 aa	Known RBP	7.36	□□□□□ -1.23
UBP13	YBL067C	HRQ1	Q05549	1077 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	MSC3	Q05812	728 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	APC2	Q12440	853 aa		7.36	□□□□□ -1.23
UBP13	YBL067C	CDC19	P00549	500 aa	Known RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	GCD1	P09032	578 aa	Predicted RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	PHO91	P27514	894 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	MSP1	P28737	362 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	EFB1	P32471	206 aa	Known RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	YME1	P32795	747 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	ADD66	P36040	267 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	UTP9	P38882	575 aa	Known RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	YJR061W	P40355	935 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	MSN5	P52918	1224 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	MGR3	Q04472	501 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	IWR1	Q07532	353 aa	Predicted RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	PSF3	Q12146	194 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	YIL002W-A	Q3E7Z5	69 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	CET1	O13297	549 aa	Predicted RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	7.35	□□□□□ -1.23	not detected
UBP13	YBL067C	MSN4	P33749	630 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	TSL1	P38427	1098 aa	Known RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	YIL077C	P40508	320 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	ALT2	P52892	507 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	DAM1	P53267	343 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	LSC1	P53598	329 aa	Known RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	YNR040W	P53736	256 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	DFG5	Q05031	458 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	YDR344C	Q05510	147 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	ADE13	Q05911	482 aa	Known RBP	7.35	□□□□□ -1.23
UBP13	YBL067C	YBR182C-A	Q8TGU6	64 aa		7.35	□□□□□ -1.23
UBP13	YBL067C	APE3	P37302	537 aa	Known RBP	7.34	□□□□□ -1.23
UBP13	YBL067C	SSN3	P39073	555 aa		7.34	□□□□□ -1.23
UBP13	YBL067C	LRO1	P40345	661 aa		7.34	□□□□□ -1.23
UBP13	YBL067C	GCV2	P49095	1034 aa		7.34	□□□□□ -1.23
UBP13	YBL067C	HNT2	P49775	206 aa		7.34	□□□□□ -1.23
UBP13	YBL067C	CUS1	Q02554	436 aa	Predicted RBP	7.34	□□□□□ -1.23
UBP13	YBL067C	LEE1	Q02799	301 aa	Known RBP	7.34	□□□□□ -1.23
UBP13	YBL067C	ARR2	Q06597	130 aa		7.34	□□□□□ -1.23
UBP13	YBL067C	RPL11A	P0C0W9	174 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	AMS1	P22855	1083 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	CRM1	P30822	1084 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	MRP20	P32387	263 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	MGM101	P32787	269 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	THI2	P38141	450 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	MMM1	P41800	426 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	ETT1	Q08421	412 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	IOC2	Q12072	812 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	RPL11B	Q3E757	174 aa	Predicted RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	YBL111C	Q3E7Y5	667 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	RPS9A	O13516	197 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	TUB2	P02557	457 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	ADE8	P04161	214 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	RPS9B	P05755	195 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	YEL076C-A	P0CX16	216 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	YLR464W	P0CX17	216 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	UNG1	P12887	359 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	AFT1	P22149	690 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	SNT1	P25357	1226 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	HSP104	P31539	908 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	RMA1	P36001	430 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	KDX1	P36005	433 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	MSG5	P38590	489 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	YEL076C	P39971	216 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	YOR059C	Q08448	450 aa	Known RBP	7.33	□□□□□ -1.24
UBP13	YBL067C	HER1	Q12276	1246 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	YRF1-4	O13559	1382 aa		7.33	□□□□□ -1.24
UBP13	YBL067C	TFA2	P36145	328 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	SRP68	P38687	599 aa	Known RBP	7.32	□□□□□ -1.24
UBP13	YBL067C	NUP85	P46673	744 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	MNT4	P53745	580 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	YNR071C	P53757	342 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	STE11	P23561	717 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	MF(ALPHA)2	P32435	120 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	PHO11	P35842	467 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	ECM4	P36156	370 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	DAD2	P36162	133 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	PHO12	P38693	467 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	MNT2	P53059	558 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	NOP15	P53927	220 aa	Predicted RBP	7.32	□□□□□ -1.24
UBP13	YBL067C	YDR514C	Q04408	483 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	ROY1	Q04847	553 aa		7.32	□□□□□ -1.24
UBP13	YBL067C	LEU9	Q12166	604 aa	Known RBP	7.32	□□□□□ -1.24
UBP13	YBL067C	RPL1A	P0CX43	217 aa	Known RBP	7.31	□□□□□ -1.24
UBP13	YBL067C	RPL1B	P0CX44	217 aa	Known RBP	7.31	□□□□□ -1.24
UBP13	YBL067C	SPT23	P35210	1082 aa		7.31	□□□□□ -1.24
UBP13	YBL067C	DSE4	P53753	1117 aa		7.31	□□□□□ -1.24
UBP13	YBL067C	RTC4	P53850	401 aa		7.31	□□□□□ -1.24
UBP13	YBL067C	EFR3	Q03653	782 aa	Known RBP	7.31	□□□□□ -1.24
UBP13	YBL067C	RPC11	Q04307	110 aa	Predicted RBP	7.31	□□□□□ -1.24
UBP13	YBL067C	PEX19	Q07418	342 aa		7.31	□□□□□ -1.24
UBP13	YBL067C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	7.31	□□□□□ -1.24	not detected
UBP13	YBL067C	TAF3	Q12297	353 aa		7.31	□□□□□ -1.24
UBP13	YBL067C	YBR126W-A	Q8TGU7	68 aa		7.31	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms