RNA–Protein interactions for RNA: ENST00000621396.4

CBWD3-216, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-216ENST00000621396 FAM163AQ96GL9 167 aaPredicted RBP18.84■□□□□ 0.61
CBWD3-216ENST00000621396 MKRN1Q9UHC7 482 aaKnown RBP18.84■□□□□ 0.61
CBWD3-216ENST00000621396 ZNRF3Q9ULT6 936 aa18.84■□□□□ 0.61
CBWD3-216ENST00000621396 LIMCH1Q9UPQ0 1083 aa18.84■□□□□ 0.61
CBWD3-216ENST00000621396 KDM4AO75164 1064 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 AKNAD1Q5T1N1 836 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 MFSD6Q6ZSS7 791 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 ARHGAP27Q6ZUM4 889 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 RAB11FIP4Q86YS3 637 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 MB21D2Q8IYB1 491 aaPredicted RBP18.83■□□□□ 0.61
CBWD3-216ENST00000621396 JDP2Q8WYK2 163 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 NAP1L2Q9ULW6 460 aaPredicted RBP18.83■□□□□ 0.61
CBWD3-216ENST00000621396 MAST2Q6P0Q8 1798 aa18.83■□□□□ 0.61
CBWD3-216ENST00000621396 SHTN1A0MZ66 631 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 PRC1O43663 620 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 PLCD1P51178 756 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 APOBRQ0VD83 1088 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 TRDNQ13061 729 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 ATP8A2Q9NTI2 1148 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 USP40Q9NVE5 1235 aa18.83■□□□□ 0.6
CBWD3-216ENST00000621396 PPFIA3O75145 1194 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 SLURP2P0DP57 97 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 SLF2Q8IX21 1173 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 DYNLL2Q96FJ2 89 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 SENP2Q9HC62 589 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 DDX4Q9NQI0 724 aaKnown RBP18.82■□□□□ 0.6
CBWD3-216ENST00000621396 ZSWIM5Q9P217 1185 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 SUGT1Q9Y2Z0 365 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 ZMYM6O95789 1325 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 LAMA4Q16363 1823 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 MCM2P49736 904 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 NFIAQ12857 509 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 CDC42EP5Q6NZY7 148 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 CCDC83Q8IWF9 413 aa18.82■□□□□ 0.6
CBWD3-216ENST00000621396 RSBN1LQ6PCB5 846 aaPredicted RBP18.81■□□□□ 0.6
CBWD3-216ENST00000621396 FLT1P17948 1338 aa18.81■□□□□ 0.6
CBWD3-216ENST00000621396 HMGB1P09429 215 aaKnown RBP18.81■□□□□ 0.6
CBWD3-216ENST00000621396 MCM5P33992 734 aa18.81■□□□□ 0.6
CBWD3-216ENST00000621396 ST3GAL1Q11201 340 aa18.81■□□□□ 0.6
CBWD3-216ENST00000621396 SLC44A5Q8NCS7 719 aa18.81■□□□□ 0.6
CBWD3-216ENST00000621396 FER1L6Q2WGJ9 1857 aa18.8■□□□□ 0.6
CBWD3-216ENST00000621396 WDHD1O75717 1129 aaPredicted RBP18.8■□□□□ 0.6
CBWD3-216ENST00000621396 VIL1P09327 827 aaKnown RBP18.8■□□□□ 0.6
CBWD3-216ENST00000621396 TCP10Q12799 353 aa18.8■□□□□ 0.6
CBWD3-216ENST00000621396 PRMT6Q96LA8 375 aaPredicted RBP18.8■□□□□ 0.6
CBWD3-216ENST00000621396 PKP1Q13835 747 aa18.8■□□□□ 0.6
CBWD3-216ENST00000621396 ZFPM1Q8IX07 1006 aa18.8■□□□□ 0.6
CBWD3-216ENST00000621396 STAG1Q8WVM7 1258 aa18.8■□□□□ 0.6
CBWD3-216ENST00000621396 TDRD3Q9H7E2 651 aaKnown RBP18.8■□□□□ 0.6
CBWD3-216ENST00000621396 SCAF8Q9UPN6 1271 aaKnown RBP18.8■□□□□ 0.6
CBWD3-216ENST00000621396 POLR3DP05423 398 aaPredicted RBP18.79■□□□□ 0.6
CBWD3-216ENST00000621396 YBX3P16989 372 aaKnown RBP eCLIP18.79■□□□□ 0.6
CBWD3-216ENST00000621396 CFAP100Q494V2 611 aa18.79■□□□□ 0.6
CBWD3-216ENST00000621396 HHIPL2Q6UWX4 724 aa18.79■□□□□ 0.6
CBWD3-216ENST00000621396 RANBP6O60518 1105 aaKnown RBP18.79■□□□□ 0.6
CBWD3-216ENST00000621396 FAM47AQ5JRC9 791 aa18.79■□□□□ 0.6
CBWD3-216ENST00000621396 GIMAP6Q6P9H5 292 aa18.79■□□□□ 0.6
CBWD3-216ENST00000621396 ZDHHC15Q96MV8 337 aa18.79■□□□□ 0.6
CBWD3-216ENST00000621396 CCT2P78371 535 aaKnown RBP18.78■□□□□ 0.6
CBWD3-216ENST00000621396 C12orf60Q5U649 245 aa18.78■□□□□ 0.6
CBWD3-216ENST00000621396 TMED8Q6PL24 325 aaPredicted RBP18.78■□□□□ 0.6
CBWD3-216ENST00000621396 ARPP21Q9UBL0 812 aaPredicted RBP18.78■□□□□ 0.6
CBWD3-216ENST00000621396 GJA3Q9Y6H8 435 aa18.78■□□□□ 0.6
CBWD3-216ENST00000621396 RXRAP19793 462 aa18.78■□□□□ 0.6
CBWD3-216ENST00000621396 NCOA5Q9HCD5 579 aaKnown RBP18.78■□□□□ 0.6
CBWD3-216ENST00000621396 ANAPC4Q9UJX5 808 aa18.78■□□□□ 0.6
CBWD3-216ENST00000621396 BRPF3Q9ULD4 1205 aa18.78■□□□□ 0.6
CBWD3-216ENST00000621396 ZNF646O15015 1829 aaPredicted RBP18.77■□□□□ 0.6
CBWD3-216ENST00000621396 NMT2O60551 498 aa18.77■□□□□ 0.6
CBWD3-216ENST00000621396 PLCG2P16885 1265 aa18.77■□□□□ 0.6
CBWD3-216ENST00000621396 FKBP1AP62942 108 aaKnown RBP18.77■□□□□ 0.6
CBWD3-216ENST00000621396 CUL4AQ13619 759 aa18.77■□□□□ 0.6
CBWD3-216ENST00000621396 CIAPIN1Q6FI81 312 aa18.77■□□□□ 0.6
CBWD3-216ENST00000621396 GMLQ99445 158 aa18.77■□□□□ 0.6
CBWD3-216ENST00000621396 CLRN2A0PK11 232 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 EGFRP00533 1210 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 ANKRD1Q15327 319 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 VPS33BQ9H267 617 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 SERPINA10Q9UK55 444 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 RBM26Q5T8P6 1007 aaKnown RBP18.76■□□□□ 0.59
CBWD3-216ENST00000621396 OGFOD1Q8N543 542 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 MYL10Q9BUA6 226 aa18.76■□□□□ 0.59
CBWD3-216ENST00000621396 DDIT3P35638 169 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 FOXD4L5Q5VV16 416 aaPredicted RBP18.75■□□□□ 0.59
CBWD3-216ENST00000621396 FOXD4L4Q8WXT5 416 aaPredicted RBP18.75■□□□□ 0.59
CBWD3-216ENST00000621396 IFIT3O14879 490 aaKnown RBP18.75■□□□□ 0.59
CBWD3-216ENST00000621396 IGSF3O75054 1194 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 SBK1Q52WX2 424 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 CCDC144CPQ8IYA2 1237 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 IGDCC4Q8TDY8 1250 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 AGXT2Q9BYV1 514 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 KRT23Q9C075 422 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 ALDH8A1Q9H2A2 487 aaPredicted RBP18.75■□□□□ 0.59
CBWD3-216ENST00000621396 RNF41Q9H4P4 317 aaPredicted RBP18.75■□□□□ 0.59
CBWD3-216ENST00000621396 CNNM2Q9H8M5 875 aa18.75■□□□□ 0.59
CBWD3-216ENST00000621396 KLF18A0A0U1RQI7 1052 aa18.74■□□□□ 0.59
CBWD3-216ENST00000621396 SCRN1Q12765 414 aa18.74■□□□□ 0.59
CBWD3-216ENST00000621396 TMEM67Q5HYA8 995 aa18.74■□□□□ 0.59
CBWD3-216ENST00000621396 CHMP4CQ96CF2 233 aa18.74■□□□□ 0.59
CBWD3-216ENST00000621396 ZNF541Q9H0D2 1346 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms