RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C TY1B-GR1Q12141 1755 aa8.27□□□□□ -1.08
VPS1YKR001C TY1B-BLQ12490 1755 aa8.27□□□□□ -1.08
VPS1YKR001C NUP159P40477 1460 aa8.27□□□□□ -1.09
VPS1YKR001C DRS2P39524 1355 aa8.27□□□□□ -1.09
VPS1YKR001C POL1P13382 1468 aa8.25□□□□□ -1.09
VPS1YKR001C RPO21P04050 1733 aaKnown RBP8.24□□□□□ -1.09
VPS1YKR001C DNF2Q12675 1612 aa8.22□□□□□ -1.09
VPS1YKR001C URN1Q06525 465 aaKnown RBP8.22□□□□□ -1.09
VPS1YKR001C SPP41P38904 1435 aa8.22□□□□□ -1.09
VPS1YKR001C SMC4Q12267 1418 aa8.22□□□□□ -1.09
VPS1YKR001C YOR1P53049 1477 aa8.2□□□□□ -1.1
VPS1YKR001C VTH1P40438 1549 aa8.18□□□□□ -1.1
VPS1YKR001C VTH2P40890 1549 aa8.18□□□□□ -1.1
VPS1YKR001C TSC11P40061 1430 aa8.15□□□□□ -1.1
VPS1YKR001C STU1P38198 1513 aa8.15□□□□□ -1.11
VPS1YKR001C NUP170P38181 1502 aa8.13□□□□□ -1.11
VPS1YKR001C SPO14P36126 1683 aa8.12□□□□□ -1.11
VPS1YKR001C TFA1P36100 482 aa8.11□□□□□ -1.11
VPS1YKR001C MYO4P32492 1471 aa8.1□□□□□ -1.11
VPS1YKR001C SNT2P53127 1403 aa8.07□□□□□ -1.12
VPS1YKR001C YOR093CQ12275 1648 aa8.07□□□□□ -1.12
VPS1YKR001C ULS1Q08562 1619 aa8.06□□□□□ -1.12
VPS1YKR001C DOP1Q03921 1698 aa8.06□□□□□ -1.12
VPS1YKR001C SNQ2P32568 1501 aaKnown RBP8.05□□□□□ -1.12
VPS1YKR001C PDR12Q02785 1511 aa7.98□□□□□ -1.13
VPS1YKR001C TRM3Q07527 1436 aa7.97□□□□□ -1.13
VPS1YKR001C MET10P39692 1035 aa7.96□□□□□ -1.13
VPS1YKR001C MLP2P40457 1679 aa7.95□□□□□ -1.14
VPS1YKR001C GDB1Q06625 1536 aa7.93□□□□□ -1.14
VPS1YKR001C IQG1Q12280 1495 aa7.92□□□□□ -1.14
VPS1YKR001C PDR10P51533 1564 aa7.92□□□□□ -1.14
VPS1YKR001C STH1P32597 1359 aa7.92□□□□□ -1.14
VPS1YKR001C YTA7P40340 1379 aa7.89□□□□□ -1.15
VPS1YKR001C BUD3P25558 1636 aa7.89□□□□□ -1.15
VPS1YKR001C CHC1P22137 1653 aaKnown RBP7.88□□□□□ -1.15
VPS1YKR001C PDR15Q04182 1529 aaKnown RBP7.86□□□□□ -1.15
VPS1YKR001C DNF3Q12674 1656 aa7.86□□□□□ -1.15
VPS1YKR001C RTT106P40161 455 aa7.85□□□□□ -1.15
VPS1YKR001C NUP157P40064 1391 aaKnown RBP7.84□□□□□ -1.15
VPS1YKR001C ARO1P08566 1588 aaKnown RBP7.84□□□□□ -1.15
VPS1YKR001C SIS2P36024 562 aa7.81□□□□□ -1.16
VPS1YKR001C EBP2P36049 427 aaKnown RBP7.75□□□□□ -1.17
VPS1YKR001C SEC7P11075 2009 aaKnown RBP7.73□□□□□ -1.17
VPS1YKR001C TY3B-GQ99315 1547 aa7.7□□□□□ -1.18
VPS1YKR001C USO1P25386 1790 aa7.69□□□□□ -1.18
VPS1YKR001C CAB3P36076 571 aa7.69□□□□□ -1.18
VPS1YKR001C YAP3P38749 330 aa7.65□□□□□ -1.18
VPS1YKR001C YBT1P32386 1661 aa7.65□□□□□ -1.19
VPS1YKR001C YFR016CP43597 1233 aaKnown RBP7.63□□□□□ -1.19
VPS1YKR001C CAT8P39113 1433 aa7.62□□□□□ -1.19
VPS1YKR001C MAK10Q02197 733 aa7.62□□□□□ -1.19
VPS1YKR001C BNR1P40450 1375 aa7.61□□□□□ -1.19
VPS1YKR001C YSP2Q06681 1438 aa7.58□□□□□ -1.2
VPS1YKR001C YRB30P53107 440 aaPredicted RBP7.55□□□□□ -1.2
VPS1YKR001C SAS10Q12136 610 aaPredicted RBP7.55□□□□□ -1.2
VPS1YKR001C NOP2P40991 618 aaKnown RBP7.54□□□□□ -1.2
VPS1YKR001C TY1B-NL2Q99337 1749 aaKnown RBP7.54□□□□□ -1.2
VPS1YKR001C GEA1P47102 1408 aaPredicted RBP7.54□□□□□ -1.2
VPS1YKR001C IFH1P39520 1085 aa7.54□□□□□ -1.2
VPS1YKR001C IML1P47170 1584 aa7.51□□□□□ -1.21
VPS1YKR001C NUP188P52593 1655 aaKnown RBP7.51□□□□□ -1.21
VPS1YKR001C NAP1P25293 417 aaKnown RBP7.51□□□□□ -1.21
VPS1YKR001C HAP1P0CE41 1502 aa7.51□□□□□ -1.21
VPS1YKR001C AVT3P36062 692 aa7.5□□□□□ -1.21
VPS1YKR001C CKB1P43639 278 aa7.49□□□□□ -1.21
VPS1YKR001C IOC4Q04213 475 aa7.48□□□□□ -1.21
VPS1YKR001C RPS0BP46654 252 aaKnown RBP7.46□□□□□ -1.22
VPS1YKR001C YMR196WQ04336 1088 aa7.46□□□□□ -1.22
VPS1YKR001C THI12P42883 340 aa7.45□□□□□ -1.22
VPS1YKR001C THI5P43534 340 aa7.45□□□□□ -1.22
VPS1YKR001C THI11P47183 340 aa7.45□□□□□ -1.22
VPS1YKR001C THI13Q07748 340 aa7.45□□□□□ -1.22
VPS1YKR001C DIP2Q12220 943 aaPredicted RBP7.44□□□□□ -1.22
VPS1YKR001C KRI1P42846 591 aaKnown RBP7.42□□□□□ -1.22
VPS1YKR001C VMR1P38735 1592 aa7.41□□□□□ -1.22
VPS1YKR001C LEO1P38439 464 aa7.4□□□□□ -1.23
VPS1YKR001C IPL1P38991 367 aa7.4□□□□□ -1.23
VPS1YKR001C SRB8P25648 1427 aa7.38□□□□□ -1.23
VPS1YKR001C GLN1P32288 370 aaKnown RBP7.35□□□□□ -1.23
VPS1YKR001C YAH1Q12184 172 aaKnown RBP7.34□□□□□ -1.23
VPS1YKR001C TYS1P36421 394 aaKnown RBP7.33□□□□□ -1.24
VPS1YKR001C AIM44Q99299 758 aa7.3□□□□□ -1.24
VPS1YKR001C BUD21Q08492 214 aaPredicted RBP7.28□□□□□ -1.24
VPS1YKR001C PDR5P33302 1511 aaKnown RBP7.27□□□□□ -1.25
VPS1YKR001C YIL055CP40523 627 aaKnown RBP7.27□□□□□ -1.25
VPS1YKR001C DMA1P38823 416 aa7.25□□□□□ -1.25
VPS1YKR001C APP1P53933 587 aa7.24□□□□□ -1.25
VPS1YKR001C BCK1Q01389 1478 aa7.22□□□□□ -1.25
VPS1YKR001C MNN4P36044 1178 aa7.22□□□□□ -1.25
VPS1YKR001C PTP3P40048 928 aa7.22□□□□□ -1.25
VPS1YKR001C CWC22P53333 577 aaKnown RBP7.21□□□□□ -1.25
VPS1YKR001C PRI1P10363 409 aa7.19□□□□□ -1.26
VPS1YKR001C CFT1Q06632 1357 aaKnown RBP7.19□□□□□ -1.26
VPS1YKR001C PDR11P40550 1411 aa7.18□□□□□ -1.26
VPS1YKR001C YMR074CQ04773 145 aa7.18□□□□□ -1.26
VPS1YKR001C GCN2P15442 1659 aa7.18□□□□□ -1.26
VPS1YKR001C KRE5P22023 1365 aa7.17□□□□□ -1.26
VPS1YKR001C YRF1-2P40105 1681 aa7.17□□□□□ -1.26
VPS1YKR001C SNU71P53207 620 aaKnown RBP7.16□□□□□ -1.26
VPS1YKR001C YPR148CQ06523 435 aa7.15□□□□□ -1.27
Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms