RNA–Protein interactions for RNA: YDR054C

CDC34, Transcript of Ubiquitin-conjugating enzyme (E2), yeastyeast

Gene CDC34, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC34YDR054C ESC1Q03661 1658 aaKnown RBP9.25□□□□□ -0.93
CDC34YDR054C RPA190P10964 1664 aaKnown RBP9.21□□□□□ -0.93
CDC34YDR054C LEU3P08638 886 aa9.2□□□□□ -0.94
CDC34YDR054C SNT2P53127 1403 aa9.19□□□□□ -0.94
CDC34YDR054C PDR15Q04182 1529 aaKnown RBP9.18□□□□□ -0.94
CDC34YDR054C NUP159P40477 1460 aa9.16□□□□□ -0.94
CDC34YDR054C ULS1Q08562 1619 aa9.16□□□□□ -0.94
CDC34YDR054C MET5P47169 1442 aa9.14□□□□□ -0.95
CDC34YDR054C TY1B-JR2P47100 1755 aaKnown RBP9.14□□□□□ -0.95
CDC34YDR054C TY1B-ER2Q03619 1755 aa9.14□□□□□ -0.95
CDC34YDR054C TY1B-MR1Q04214 1755 aa9.14□□□□□ -0.95
CDC34YDR054C TY1B-MR2Q04670 1755 aaKnown RBP9.14□□□□□ -0.95
CDC34YDR054C TY1B-LR1Q12088 1755 aaKnown RBP9.14□□□□□ -0.95
CDC34YDR054C TY1B-NL1Q12112 1755 aa9.14□□□□□ -0.95
CDC34YDR054C TY1B-GR1Q12141 1755 aa9.14□□□□□ -0.95
CDC34YDR054C TY1B-BLQ12490 1755 aa9.14□□□□□ -0.95
CDC34YDR054C IFH1P39520 1085 aa9.14□□□□□ -0.95
CDC34YDR054C NTE1Q04958 1679 aa9.13□□□□□ -0.95
CDC34YDR054C MLP2P40457 1679 aa9.1□□□□□ -0.95
CDC34YDR054C GEA1P47102 1408 aaPredicted RBP9.09□□□□□ -0.95
CDC34YDR054C RPO21P04050 1733 aaKnown RBP9.08□□□□□ -0.96
CDC34YDR054C ISW2Q08773 1120 aa9.08□□□□□ -0.96
CDC34YDR054C RTT106P40161 455 aa9.07□□□□□ -0.96
CDC34YDR054C GEA2P39993 1459 aaKnown RBP9.07□□□□□ -0.96
CDC34YDR054C RPG1P38249 964 aaKnown RBP9.05□□□□□ -0.96
CDC34YDR054C TY3B-GQ99315 1547 aa9.04□□□□□ -0.96
CDC34YDR054C VPS15P22219 1454 aa9.03□□□□□ -0.96
CDC34YDR054C IRC20Q06554 1556 aa9.03□□□□□ -0.96
CDC34YDR054C SSP1P38871 571 aa9.01□□□□□ -0.97
CDC34YDR054C YRF1-1P0CX20 1796 aa9□□□□□ -0.97
CDC34YDR054C YRF1-5P0CX21 1796 aa9□□□□□ -0.97
CDC34YDR054C YRF1-8P0CX22 1796 aa9□□□□□ -0.97
CDC34YDR054C RPL17AP05740 184 aaKnown RBP9□□□□□ -0.97
CDC34YDR054C RPL17BP46990 184 aaKnown RBP9□□□□□ -0.97
CDC34YDR054C MET10P39692 1035 aa8.99□□□□□ -0.97
CDC34YDR054C YCK3P39962 524 aa8.98□□□□□ -0.97
CDC34YDR054C LTE1P07866 1435 aa8.97□□□□□ -0.97
CDC34YDR054C PDR12Q02785 1511 aa8.97□□□□□ -0.97
CDC34YDR054C NUP157P40064 1391 aaKnown RBP8.96□□□□□ -0.98
CDC34YDR054C SPO14P36126 1683 aa8.95□□□□□ -0.98
CDC34YDR054C IKI3Q06706 1349 aaKnown RBP8.95□□□□□ -0.98
CDC34YDR054C GDB1Q06625 1536 aa8.95□□□□□ -0.98
CDC34YDR054C CAT8P39113 1433 aa8.94□□□□□ -0.98
CDC34YDR054C PDR10P51533 1564 aa8.93□□□□□ -0.98
CDC34YDR054C DMA2P53924 522 aa8.92□□□□□ -0.98
CDC34YDR054C NUP170P38181 1502 aa8.9□□□□□ -0.98
CDC34YDR054C SSM4P40318 1319 aa8.9□□□□□ -0.98
CDC34YDR054C YBT1P32386 1661 aa8.9□□□□□ -0.98
CDC34YDR054C RPN1P38764 993 aaKnown RBP8.87□□□□□ -0.99
CDC34YDR054C IQG1Q12280 1495 aa8.87□□□□□ -0.99
CDC34YDR054C ARO1P08566 1588 aaKnown RBP8.86□□□□□ -0.99
CDC34YDR054C CKB1P43639 278 aa8.86□□□□□ -0.99
CDC34YDR054C RIM101P33400 625 aa8.85□□□□□ -0.99
CDC34YDR054C ITT1Q04638 464 aa8.85□□□□□ -0.99
CDC34YDR054C DRS2P39524 1355 aa8.85□□□□□ -0.99
CDC34YDR054C YSP2Q06681 1438 aa8.82□□□□□ -1
CDC34YDR054C TSR3Q12094 313 aaKnown RBP8.82□□□□□ -1
CDC34YDR054C SRB8P25648 1427 aa8.81□□□□□ -1
CDC34YDR054C BUD3P25558 1636 aa8.81□□□□□ -1
CDC34YDR054C REB1P21538 810 aa8.81□□□□□ -1
CDC34YDR054C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.81□□□□□ -1not detected
CDC34YDR054C RLF2Q12495 606 aa8.8□□□□□ -1
CDC34YDR054C BNI1P41832 1953 aa8.78□□□□□ -1
CDC34YDR054C HAA1Q12753 694 aaKnown RBP8.75□□□□□ -1.01
CDC34YDR054C TRM3Q07527 1436 aa8.74□□□□□ -1.01
CDC34YDR054C MMS1Q06211 1407 aa8.73□□□□□ -1.01
CDC34YDR054C SPT21P35209 758 aa8.72□□□□□ -1.01
CDC34YDR054C BNR1P40450 1375 aa8.72□□□□□ -1.01
CDC34YDR054C BUD21Q08492 214 aaPredicted RBP8.7□□□□□ -1.02
CDC34YDR054C YAH1Q12184 172 aaKnown RBP8.7□□□□□ -1.02
CDC34YDR054C DOP1Q03921 1698 aa8.69□□□□□ -1.02
CDC34YDR054C ABP1P15891 592 aaKnown RBP8.67□□□□□ -1.02
CDC34YDR054C AIM44Q99299 758 aa8.65□□□□□ -1.02
CDC34YDR054C CHC1P22137 1653 aaKnown RBP8.63□□□□□ -1.03
CDC34YDR054C OXP1P28273 1286 aa8.6□□□□□ -1.03
CDC34YDR054C MGA2P40578 1113 aa8.58□□□□□ -1.04
CDC34YDR054C YLR271WQ06152 274 aa8.58□□□□□ -1.04
CDC34YDR054C SPB4P25808 606 aaPredicted RBP8.57□□□□□ -1.04
CDC34YDR054C DNF2Q12675 1612 aa8.57□□□□□ -1.04
CDC34YDR054C YIL055CP40523 627 aaKnown RBP8.56□□□□□ -1.04
CDC34YDR054C SEC7P11075 2009 aaKnown RBP8.55□□□□□ -1.04
CDC34YDR054C VMR1P38735 1592 aa8.55□□□□□ -1.04
CDC34YDR054C GCN2P15442 1659 aa8.55□□□□□ -1.04
CDC34YDR054C YOR093CQ12275 1648 aa8.53□□□□□ -1.04
CDC34YDR054C PDR5P33302 1511 aaKnown RBP8.53□□□□□ -1.04
CDC34YDR054C PDR11P40550 1411 aa8.53□□□□□ -1.04
CDC34YDR054C IML1P47170 1584 aa8.5□□□□□ -1.05
CDC34YDR054C TYS1P36421 394 aaKnown RBP8.49□□□□□ -1.05
CDC34YDR054C NUP188P52593 1655 aaKnown RBP8.49□□□□□ -1.05
CDC34YDR054C YAP3P38749 330 aa8.47□□□□□ -1.05
CDC34YDR054C IPL1P38991 367 aa8.46□□□□□ -1.06
CDC34YDR054C HGH1P48362 394 aaKnown RBP8.46□□□□□ -1.06
CDC34YDR054C NOP7P53261 605 aaKnown RBP8.46□□□□□ -1.06
CDC34YDR054C PAF1P38351 445 aa8.45□□□□□ -1.06
CDC34YDR054C URN1Q06525 465 aaKnown RBP8.44□□□□□ -1.06
CDC34YDR054C RAV1P47104 1357 aa8.44□□□□□ -1.06
CDC34YDR054C MRPL32P25348 183 aa8.42□□□□□ -1.06
CDC34YDR054C RTC1Q08281 1341 aa8.4□□□□□ -1.06
CDC34YDR054C NAP1P25293 417 aaKnown RBP8.4□□□□□ -1.06
CDC34YDR054C VPS70P47161 811 aa8.39□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms