RNA–Protein interactions for RNA: ENST00000640001.1

HNRNPU-223, Transcript of heterogeneous nuclear ribonucleoprotein U, human

TSL 5 BASIC

Gene HNRNPU, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPU-223	ENST00000640001	CHIC2	Q9UKJ5	165 aa		11.09	□□□□□ -0.63
HNRNPU-223	ENST00000640001	SCAF1	Q9H7N4	1312 aa	Known RBP	11.09	□□□□□ -0.63
HNRNPU-223	ENST00000640001	DNAJC5B	Q9UF47	199 aa		11.06	□□□□□ -0.64
HNRNPU-223	ENST00000640001	ARHGAP35	Q9NRY4	1499 aa		11.06	□□□□□ -0.64
HNRNPU-223	ENST00000640001	BIVM-ERCC5	R4GMW8	1640 aa		11.05	□□□□□ -0.64
HNRNPU-223	ENST00000640001	PELP1	Q8IZL8	1130 aa	Known RBP	11.05	□□□□□ -0.64
HNRNPU-223	ENST00000640001	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.04	□□□□□ -0.64
HNRNPU-223	ENST00000640001	SIN3A	Q96ST3	1273 aa		11.04	□□□□□ -0.64
HNRNPU-223	ENST00000640001	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.04	□□□□□ -0.64
HNRNPU-223	ENST00000640001	CLSPN	Q9HAW4	1339 aa		11.03	□□□□□ -0.64
HNRNPU-223	ENST00000640001	RRP7BP	Q9NSQ0	103 aa		11.02	□□□□□ -0.64
HNRNPU-223	ENST00000640001	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.01	□□□□□ -0.65
HNRNPU-223	ENST00000640001	RAB3GAP2	Q9H2M9	1393 aa		11.01	□□□□□ -0.65
HNRNPU-223	ENST00000640001	POLR3GL	Q9BT43	218 aa		11.01	□□□□□ -0.65
HNRNPU-223	ENST00000640001	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.01	□□□□□ -0.65
HNRNPU-223	ENST00000640001	DHX57	Q6P158	1386 aa	Known RBP	11.01	□□□□□ -0.65
HNRNPU-223	ENST00000640001	TONSL	Q96HA7	1378 aa		11.01	□□□□□ -0.65
HNRNPU-223	ENST00000640001	TOPBP1	Q92547	1522 aa		11	□□□□□ -0.65
HNRNPU-223	ENST00000640001	POLA1	P09884	1462 aa	Predicted RBP	11	□□□□□ -0.65
HNRNPU-223	ENST00000640001	DDX10	Q13206	875 aa	Known RBP	11	□□□□□ -0.65
HNRNPU-223	ENST00000640001	CNGB1	Q14028	1251 aa	Predicted RBP	10.99	□□□□□ -0.65
HNRNPU-223	ENST00000640001	ERCC6	Q03468	1493 aa		10.99	□□□□□ -0.65
HNRNPU-223	ENST00000640001	SETD5	Q9C0A6	1442 aa		10.98	□□□□□ -0.65
HNRNPU-223	ENST00000640001	FMN1	Q68DA7	1419 aa		10.98	□□□□□ -0.65
HNRNPU-223	ENST00000640001	GAPVD1	Q14C86	1478 aa		10.97	□□□□□ -0.65
HNRNPU-223	ENST00000640001	ZNF326	Q5BKZ1	582 aa	Known RBP	10.95	□□□□□ -0.66
HNRNPU-223	ENST00000640001	PHLDB1	Q86UU1	1377 aa		10.95	□□□□□ -0.66
HNRNPU-223	ENST00000640001	DNMBP	Q6XZF7	1577 aa		10.94	□□□□□ -0.66
HNRNPU-223	ENST00000640001	ANP32C	O43423	234 aa		10.94	□□□□□ -0.66
HNRNPU-223	ENST00000640001	NEFL	P07196	543 aa		10.94	□□□□□ -0.66
HNRNPU-223	ENST00000640001	LRRC9	Q6ZRR7	1453 aa		10.93	□□□□□ -0.66
HNRNPU-223	ENST00000640001	RRBP1	Q9P2E9	1410 aa	Known RBP	10.92	□□□□□ -0.66
HNRNPU-223	ENST00000640001	AQR	O60306	1485 aa	Known RBP eCLIP	10.91	□□□□□ -0.66	1e-7	■■■■□ 25.3
HNRNPU-223	ENST00000640001	ABCA10	Q8WWZ4	1543 aa		10.91	□□□□□ -0.66
HNRNPU-223	ENST00000640001	MYT1L	Q9UL68	1186 aa		10.91	□□□□□ -0.66
HNRNPU-223	ENST00000640001	URB2	Q14146	1524 aa	Known RBP	10.87	□□□□□ -0.67
HNRNPU-223	ENST00000640001	TIAM1	Q13009	1591 aa		10.87	□□□□□ -0.67
HNRNPU-223	ENST00000640001	CASKIN1	Q8WXD9	1431 aa		10.87	□□□□□ -0.67
HNRNPU-223	ENST00000640001	CFDP1	Q9UEE9	299 aa	Predicted RBP	10.87	□□□□□ -0.67
HNRNPU-223	ENST00000640001	BCAN	Q96GW7	911 aa		10.85	□□□□□ -0.67
HNRNPU-223	ENST00000640001	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.85	□□□□□ -0.67
HNRNPU-223	ENST00000640001	LAMC3	Q9Y6N6	1575 aa		10.85	□□□□□ -0.67
HNRNPU-223	ENST00000640001	PLEKHD1	A6NEE1	506 aa		10.85	□□□□□ -0.67
HNRNPU-223	ENST00000640001	FYCO1	Q9BQS8	1478 aa		10.84	□□□□□ -0.67
HNRNPU-223	ENST00000640001	FGD6	Q6ZV73	1430 aa		10.83	□□□□□ -0.68
HNRNPU-223	ENST00000640001	PCF11	O94913	1555 aa	Known RBP	10.82	□□□□□ -0.68
HNRNPU-223	ENST00000640001	FOXD1	Q16676	465 aa		10.82	□□□□□ -0.68
HNRNPU-223	ENST00000640001	EFCAB5	A4FU69	1503 aa		10.82	□□□□□ -0.68
HNRNPU-223	ENST00000640001	TSPY4	P0CV99	314 aa		10.81	□□□□□ -0.68
HNRNPU-223	ENST00000640001	TSPY10	P0CW01	314 aa		10.81	□□□□□ -0.68
HNRNPU-223	ENST00000640001	MRC2	Q9UBG0	1479 aa		10.8	□□□□□ -0.68
HNRNPU-223	ENST00000640001	PPP1R15A	O75807	674 aa	Predicted RBP	10.8	□□□□□ -0.68
HNRNPU-223	ENST00000640001	TIMELESS	Q9UNS1	1208 aa		10.79	□□□□□ -0.68
HNRNPU-223	ENST00000640001	GRIN2B	Q13224	1484 aa		10.79	□□□□□ -0.68
HNRNPU-223	ENST00000640001	NCOA2	Q15596	1464 aa		10.78	□□□□□ -0.68
HNRNPU-223	ENST00000640001	MYOM3	Q5VTT5	1437 aa		10.78	□□□□□ -0.68
HNRNPU-223	ENST00000640001	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
HNRNPU-223	ENST00000640001	JPH4	Q96JJ6	628 aa		10.78	□□□□□ -0.68
HNRNPU-223	ENST00000640001	CCDC18	Q5T9S5	1454 aa		10.78	□□□□□ -0.68
HNRNPU-223	ENST00000640001	CUL7	Q14999	1698 aa		10.77	□□□□□ -0.68
HNRNPU-223	ENST00000640001	KCNH8	Q96L42	1107 aa		10.77	□□□□□ -0.68
HNRNPU-223	ENST00000640001	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.77	□□□□□ -0.69	2e-14	■■□□□ 13.7
HNRNPU-223	ENST00000640001	MPHOSPH9	Q99550	1183 aa		10.76	□□□□□ -0.69
HNRNPU-223	ENST00000640001	CARMIL2	Q6F5E8	1435 aa		10.76	□□□□□ -0.69
HNRNPU-223	ENST00000640001	KDM2A	Q9Y2K7	1162 aa		10.75	□□□□□ -0.69
HNRNPU-223	ENST00000640001	PRDM2	Q13029	1718 aa		10.75	□□□□□ -0.69
HNRNPU-223	ENST00000640001	MAP3K1	Q13233	1512 aa		10.75	□□□□□ -0.69
HNRNPU-223	ENST00000640001	ZNF644	Q9H582	1327 aa	Predicted RBP	10.74	□□□□□ -0.69
HNRNPU-223	ENST00000640001	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
HNRNPU-223	ENST00000640001	FKBP8	Q14318	412 aa		10.73	□□□□□ -0.69
HNRNPU-223	ENST00000640001	IFT140	Q96RY7	1462 aa		10.72	□□□□□ -0.69
HNRNPU-223	ENST00000640001	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.71	□□□□□ -0.69
HNRNPU-223	ENST00000640001	SNAPC4	Q5SXM2	1469 aa		10.71	□□□□□ -0.69
HNRNPU-223	ENST00000640001	HSPA5	P11021	654 aa	Known RBP	10.71	□□□□□ -0.7
HNRNPU-223	ENST00000640001	FAM9B	Q8IZU0	186 aa		10.71	□□□□□ -0.7
HNRNPU-223	ENST00000640001	L3MBTL2	Q969R5	705 aa		10.7	□□□□□ -0.7
HNRNPU-223	ENST00000640001	CDK13	Q14004	1512 aa	Known RBP	10.69	□□□□□ -0.7
HNRNPU-223	ENST00000640001	UACA	Q9BZF9	1416 aa		10.69	□□□□□ -0.7
HNRNPU-223	ENST00000640001	EHBP1L1	Q8N3D4	1523 aa		10.68	□□□□□ -0.7
HNRNPU-223	ENST00000640001	PKD2	Q13563	968 aa		10.68	□□□□□ -0.7
HNRNPU-223	ENST00000640001	IQGAP2	Q13576	1575 aa		10.68	□□□□□ -0.7
HNRNPU-223	ENST00000640001	RGL3	Q3MIN7	710 aa		10.67	□□□□□ -0.7
HNRNPU-223	ENST00000640001	MRS2	Q9HD23	443 aa		10.67	□□□□□ -0.7
HNRNPU-223	ENST00000640001	KIF21A	Q7Z4S6	1674 aa		10.66	□□□□□ -0.7
HNRNPU-223	ENST00000640001	HFM1	A2PYH4	1435 aa		10.66	□□□□□ -0.7
HNRNPU-223	ENST00000640001	EPRS	P07814	1512 aa	Known RBP	10.66	□□□□□ -0.7
HNRNPU-223	ENST00000640001	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
HNRNPU-223	ENST00000640001	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
HNRNPU-223	ENST00000640001	KIAA0586	Q9BVV6	1533 aa		10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	NAIP	Q13075	1403 aa		10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	HECW1	Q76N89	1606 aa		10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	CTTNBP2	Q8WZ74	1663 aa		10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	ANKRD30A	Q9BXX3	1397 aa		10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	WDR97	A6NE52	1622 aa		10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	SUPT6H	Q7KZ85	1726 aa	Known RBP	10.64	□□□□□ -0.71
HNRNPU-223	ENST00000640001	PRG4	Q92954	1404 aa	Predicted RBP	10.63	□□□□□ -0.71
HNRNPU-223	ENST00000640001	NUP155	O75694	1391 aa		10.63	□□□□□ -0.71
HNRNPU-223	ENST00000640001	PTPRK	Q15262	1439 aa		10.63	□□□□□ -0.71
HNRNPU-223	ENST00000640001	PTPRG	P23470	1445 aa		10.62	□□□□□ -0.71
HNRNPU-223	ENST00000640001	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms