RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 RRBP1Q9P2E9 1410 aaKnown RBP6.53□□□□□ -1.36
SCN1A-210ENST00000635776 ITGAEP38570 1179 aa6.53□□□□□ -1.36
SCN1A-210ENST00000635776 ARHGAP35Q9NRY4 1499 aa6.52□□□□□ -1.36
SCN1A-210ENST00000635776 GAPVD1Q14C86 1478 aa6.52□□□□□ -1.37
SCN1A-210ENST00000635776 CUL7Q14999 1698 aa6.52□□□□□ -1.37
SCN1A-210ENST00000635776 CASKIN1Q8WXD9 1431 aa6.51□□□□□ -1.37
SCN1A-210ENST00000635776 ARAP1Q96P48 1450 aa6.51□□□□□ -1.37
SCN1A-210ENST00000635776 FYCO1Q9BQS8 1478 aa6.51□□□□□ -1.37
SCN1A-210ENST00000635776 P3H3Q8IVL6 736 aa6.5□□□□□ -1.37
SCN1A-210ENST00000635776 IFT140Q96RY7 1462 aa6.5□□□□□ -1.37
SCN1A-210ENST00000635776 MRC2Q9UBG0 1479 aa6.5□□□□□ -1.37
SCN1A-210ENST00000635776 TDRD9Q8NDG6 1382 aaKnown RBP6.5□□□□□ -1.37
SCN1A-210ENST00000635776 SETD5Q9C0A6 1442 aa6.5□□□□□ -1.37
SCN1A-210ENST00000635776 CHMP7Q8WUX9 453 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-210ENST00000635776 ERCC6Q03468 1493 aa6.49□□□□□ -1.37
SCN1A-210ENST00000635776 CCDC18Q5T9S5 1454 aa6.49□□□□□ -1.37
SCN1A-210ENST00000635776 GRIN2BQ13224 1484 aa6.49□□□□□ -1.37
SCN1A-210ENST00000635776 CARMIL2Q6F5E8 1435 aa6.49□□□□□ -1.37
SCN1A-210ENST00000635776 PRDM2Q13029 1718 aa6.48□□□□□ -1.37
SCN1A-210ENST00000635776 KANK4Q5T7N3 995 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-210ENST00000635776 LRRC9Q6ZRR7 1453 aa6.48□□□□□ -1.37
SCN1A-210ENST00000635776 RAD54L2Q9Y4B4 1467 aa6.47□□□□□ -1.37
SCN1A-210ENST00000635776 TONSLQ96HA7 1378 aa6.46□□□□□ -1.38
SCN1A-210ENST00000635776 TIAM1Q13009 1591 aa6.46□□□□□ -1.38
SCN1A-210ENST00000635776 FHOD3Q2V2M9 1422 aa6.45□□□□□ -1.38
SCN1A-210ENST00000635776 WDR97A6NE52 1622 aa6.45□□□□□ -1.38
SCN1A-210ENST00000635776 DHX57Q6P158 1386 aaKnown RBP6.45□□□□□ -1.38
SCN1A-210ENST00000635776 THOC2Q8NI27 1593 aaKnown RBP6.45□□□□□ -1.38
SCN1A-210ENST00000635776 TRIM52Q96A61 297 aa6.44□□□□□ -1.38
SCN1A-210ENST00000635776 NESP48681 1621 aa6.44□□□□□ -1.38
SCN1A-210ENST00000635776 URB2Q14146 1524 aaKnown RBP6.43□□□□□ -1.38
SCN1A-210ENST00000635776 PLEKHD1A6NEE1 506 aa6.43□□□□□ -1.38
SCN1A-210ENST00000635776 MYT1Q01538 1121 aa6.43□□□□□ -1.38
SCN1A-210ENST00000635776 RAB3GAP2Q9H2M9 1393 aa6.43□□□□□ -1.38
SCN1A-210ENST00000635776 MYOM3Q5VTT5 1437 aa6.42□□□□□ -1.38
SCN1A-210ENST00000635776 MIA2Q96PC5 1412 aa6.42□□□□□ -1.38
SCN1A-210ENST00000635776 FBLN2P98095 1184 aa6.42□□□□□ -1.38
SCN1A-210ENST00000635776 EHBP1L1Q8N3D4 1523 aa6.42□□□□□ -1.38
SCN1A-210ENST00000635776 KIAA0586Q9BVV6 1533 aa6.42□□□□□ -1.38
SCN1A-210ENST00000635776 FGD6Q6ZV73 1430 aa6.42□□□□□ -1.38
SCN1A-210ENST00000635776 RSPH4AQ5TD94 716 aa6.41□□□□□ -1.38
SCN1A-210ENST00000635776 TSPY4P0CV99 314 aa6.4□□□□□ -1.38
SCN1A-210ENST00000635776 TSPY10P0CW01 314 aa6.4□□□□□ -1.38
SCN1A-210ENST00000635776 NEFLP07196 543 aa6.4□□□□□ -1.38
SCN1A-210ENST00000635776 ANP32CO43423 234 aa6.4□□□□□ -1.39
SCN1A-210ENST00000635776 NEUROD1Q13562 356 aa6.4□□□□□ -1.39
SCN1A-210ENST00000635776 MAGI1Q96QZ7 1491 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-210ENST00000635776 PHLDB1Q86UU1 1377 aa6.39□□□□□ -1.39
SCN1A-210ENST00000635776 CFDP1Q9UEE9 299 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-210ENST00000635776 HECW1Q76N89 1606 aa6.38□□□□□ -1.39
SCN1A-210ENST00000635776 SCAF1Q9H7N4 1312 aaKnown RBP6.38□□□□□ -1.39
SCN1A-210ENST00000635776 AKNAQ7Z591 1439 aa6.38□□□□□ -1.39
SCN1A-210ENST00000635776 NCOA2Q15596 1464 aa6.38□□□□□ -1.39
SCN1A-210ENST00000635776 UACAQ9BZF9 1416 aa6.37□□□□□ -1.39
SCN1A-210ENST00000635776 HFM1A2PYH4 1435 aa6.37□□□□□ -1.39
SCN1A-210ENST00000635776 IQGAP2Q13576 1575 aa6.37□□□□□ -1.39
SCN1A-210ENST00000635776 ABCA5Q8WWZ7 1642 aa6.36□□□□□ -1.39
SCN1A-210ENST00000635776 YTHDC1Q96MU7 727 aaKnown RBP6.35□□□□□ -1.39
SCN1A-210ENST00000635776 JPH4Q96JJ6 628 aa6.35□□□□□ -1.39
SCN1A-210ENST00000635776 PCF11O94913 1555 aaKnown RBP6.35□□□□□ -1.39
SCN1A-210ENST00000635776 SYNJ2O15056 1496 aa6.35□□□□□ -1.39
SCN1A-210ENST00000635776 ANKRD30AQ9BXX3 1397 aa6.35□□□□□ -1.39
SCN1A-210ENST00000635776 PPP1R15AO75807 674 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-210ENST00000635776 EIF4G2P78344 907 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCN1A-210ENST00000635776 ROCK1Q13464 1354 aa6.34□□□□□ -1.39
SCN1A-210ENST00000635776 WDR62O43379 1518 aa6.34□□□□□ -1.39
SCN1A-210ENST00000635776 UGGT2Q9NYU1 1516 aa6.34□□□□□ -1.39
SCN1A-210ENST00000635776 CCER2I3L3R5 266 aa6.34□□□□□ -1.39
SCN1A-210ENST00000635776 GRIN2AQ12879 1464 aa6.34□□□□□ -1.4
SCN1A-210ENST00000635776 KIF21AQ7Z4S6 1674 aa6.33□□□□□ -1.4
SCN1A-210ENST00000635776 SLC4A1APQ9BWU0 796 aaKnown RBP6.33□□□□□ -1.4
SCN1A-210ENST00000635776 SUPT6HQ7KZ85 1726 aaKnown RBP6.33□□□□□ -1.4
SCN1A-210ENST00000635776 EPRSP07814 1512 aaKnown RBP6.33□□□□□ -1.4
SCN1A-210ENST00000635776 CFAP43Q8NDM7 1665 aa6.33□□□□□ -1.4
SCN1A-210ENST00000635776 ZNF777Q9ULD5 760 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-210ENST00000635776 ADAMTS12P58397 1594 aa6.33□□□□□ -1.4
SCN1A-210ENST00000635776 TROQ12816 1431 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-210ENST00000635776 SNAPC4Q5SXM2 1469 aa6.32□□□□□ -1.4
SCN1A-210ENST00000635776 CTTNBP2Q8WZ74 1663 aa6.32□□□□□ -1.4
SCN1A-210ENST00000635776 SAMD9Q5K651 1589 aa6.32□□□□□ -1.4
SCN1A-210ENST00000635776 CHIC2Q9UKJ5 165 aa6.32□□□□□ -1.4
SCN1A-210ENST00000635776 MIER1Q8N108 512 aa6.32□□□□□ -1.4
SCN1A-210ENST00000635776 RRP7BPQ9NSQ0 103 aa6.32□□□□□ -1.4
SCN1A-210ENST00000635776 PTPRGP23470 1445 aa6.31□□□□□ -1.4
SCN1A-210ENST00000635776 GTF3C3Q9Y5Q9 886 aa6.31□□□□□ -1.4
SCN1A-210ENST00000635776 TCOF1Q13428 1488 aaKnown RBP6.3□□□□□ -1.4
SCN1A-210ENST00000635776 SLC24A1O60721 1099 aa6.3□□□□□ -1.4
SCN1A-210ENST00000635776 MPHOSPH9Q99550 1183 aa6.3□□□□□ -1.4
SCN1A-210ENST00000635776 NPM1P06748 294 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCN1A-210ENST00000635776 TARBP1Q13395 1621 aaKnown RBP6.29□□□□□ -1.4
SCN1A-210ENST00000635776 PLEKHH2Q8IVE3 1493 aa6.29□□□□□ -1.4
SCN1A-210ENST00000635776 ARID3CA6NKF2 412 aa6.28□□□□□ -1.4
SCN1A-210ENST00000635776 ARID4BQ4LE39 1312 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-210ENST00000635776 STAC3Q96MF2 364 aa6.28□□□□□ -1.4
SCN1A-210ENST00000635776 SIN3AQ96ST3 1273 aa6.28□□□□□ -1.4
SCN1A-210ENST00000635776 NAIPQ13075 1403 aa6.28□□□□□ -1.4
SCN1A-210ENST00000635776 DDX10Q13206 875 aaKnown RBP6.27□□□□□ -1.41
SCN1A-210ENST00000635776 NUP160Q12769 1436 aa6.27□□□□□ -1.41
SCN1A-210ENST00000635776 EFCAB2Q5VUJ9 269 aa6.27□□□□□ -1.41
SCN1A-210ENST00000635776 ROCK2O75116 1388 aaKnown RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms