RNA–Protein interactions for RNA: ENST00000635251.1

PSPC1-207, Transcript of paraspeckle component 1, humanhuman

TSL 2

Gene PSPC1, Length 2,285 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-207ENST00000635251 P3H3Q8IVL6 736 aa15.53■□□□□ 0.08
PSPC1-207ENST00000635251 ATP1B4Q9UN42 357 aaPredicted RBP15.53■□□□□ 0.08
PSPC1-207ENST00000635251 FAM50AQ14320 339 aaKnown RBP15.5■□□□□ 0.07
PSPC1-207ENST00000635251 PHLDB1Q86UU1 1377 aa15.49■□□□□ 0.07
PSPC1-207ENST00000635251 SETD5Q9C0A6 1442 aa15.48■□□□□ 0.07
PSPC1-207ENST00000635251 PCF11O94913 1555 aaKnown RBP15.47■□□□□ 0.07
PSPC1-207ENST00000635251 RAD54L2Q9Y4B4 1467 aa15.47■□□□□ 0.07
PSPC1-207ENST00000635251 DNMBPQ6XZF7 1577 aa15.47■□□□□ 0.07
PSPC1-207ENST00000635251 CFAP43Q8NDM7 1665 aa15.46■□□□□ 0.06
PSPC1-207ENST00000635251 FHOD3Q2V2M9 1422 aa15.45■□□□□ 0.06
PSPC1-207ENST00000635251 MAPKBP1O60336 1514 aa15.45■□□□□ 0.06
PSPC1-207ENST00000635251 ABCA10Q8WWZ4 1543 aa15.44■□□□□ 0.06
PSPC1-207ENST00000635251 TOPBP1Q92547 1522 aa15.43■□□□□ 0.06
PSPC1-207ENST00000635251 POLA1P09884 1462 aaPredicted RBP15.43■□□□□ 0.06
PSPC1-207ENST00000635251 EFCAB5A4FU69 1503 aa15.41■□□□□ 0.06
PSPC1-207ENST00000635251 FYCO1Q9BQS8 1478 aa15.4■□□□□ 0.06
PSPC1-207ENST00000635251 NESP48681 1621 aa15.39■□□□□ 0.06
PSPC1-207ENST00000635251 DNAJC5BQ9UF47 199 aa15.39■□□□□ 0.05
PSPC1-207ENST00000635251 CUL7Q14999 1698 aa15.39■□□□□ 0.05
PSPC1-207ENST00000635251 CASKIN1Q8WXD9 1431 aa15.38■□□□□ 0.05
PSPC1-207ENST00000635251 SIN3AQ96ST3 1273 aa15.37■□□□□ 0.05
PSPC1-207ENST00000635251 CTTNBP2Q8WZ74 1663 aa15.36■□□□□ 0.05
PSPC1-207ENST00000635251 AQRO60306 1485 aaKnown RBP eCLIP15.36■□□□□ 0.052e-6■■□□□ 13.8
PSPC1-207ENST00000635251 FMN1Q68DA7 1419 aa15.34■□□□□ 0.05
PSPC1-207ENST00000635251 WDR97A6NE52 1622 aa15.32■□□□□ 0.04
PSPC1-207ENST00000635251 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.31■□□□□ 0.04
PSPC1-207ENST00000635251 TIMELESSQ9UNS1 1208 aa15.3■□□□□ 0.04
PSPC1-207ENST00000635251 MTUS2Q5JR59 1369 aa15.3■□□□□ 0.04
PSPC1-207ENST00000635251 URB2Q14146 1524 aaKnown RBP15.28■□□□□ 0.04
PSPC1-207ENST00000635251 FGD6Q6ZV73 1430 aa15.28■□□□□ 0.04
PSPC1-207ENST00000635251 TDRD9Q8NDG6 1382 aaKnown RBP15.28■□□□□ 0.04
PSPC1-207ENST00000635251 DDX10Q13206 875 aaKnown RBP15.28■□□□□ 0.04
PSPC1-207ENST00000635251 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
PSPC1-207ENST00000635251 SUPT16HQ9Y5B9 1047 aaKnown RBP15.27■□□□□ 0.04
PSPC1-207ENST00000635251 SNAPC4Q5SXM2 1469 aa15.26■□□□□ 0.03
PSPC1-207ENST00000635251 KCNH8Q96L42 1107 aa15.25■□□□□ 0.03
PSPC1-207ENST00000635251 GAPVD1Q14C86 1478 aa15.25■□□□□ 0.03
PSPC1-207ENST00000635251 PPP1R15AO75807 674 aaPredicted RBP15.24■□□□□ 0.03
PSPC1-207ENST00000635251 ABCA5Q8WWZ7 1642 aa15.23■□□□□ 0.03
PSPC1-207ENST00000635251 CCDC18Q5T9S5 1454 aa15.23■□□□□ 0.03
PSPC1-207ENST00000635251 SAMD9Q5K651 1589 aa15.22■□□□□ 0.03
PSPC1-207ENST00000635251 TONSLQ96HA7 1378 aa15.22■□□□□ 0.03
PSPC1-207ENST00000635251 HIRIP3Q9BW71 556 aaPredicted RBP15.22■□□□□ 0.03
PSPC1-207ENST00000635251 PDS5BQ9NTI5 1447 aa15.21■□□□□ 0.03
PSPC1-207ENST00000635251 NCOA2Q15596 1464 aa15.19■□□□□ 0.02
PSPC1-207ENST00000635251 HFM1A2PYH4 1435 aa15.19■□□□□ 0.02
PSPC1-207ENST00000635251 MYOM3Q5VTT5 1437 aa15.18■□□□□ 0.02
PSPC1-207ENST00000635251 GRIN2BQ13224 1484 aa15.18■□□□□ 0.02
PSPC1-207ENST00000635251 UACAQ9BZF9 1416 aa15.18■□□□□ 0.02
PSPC1-207ENST00000635251 PTPRKQ15262 1439 aa15.17■□□□□ 0.02
PSPC1-207ENST00000635251 LRRIQ1Q96JM4 1722 aa15.17■□□□□ 0.02
PSPC1-207ENST00000635251 PTPN23Q9H3S7 1636 aa15.17■□□□□ 0.02
PSPC1-207ENST00000635251 SUPT6HQ7KZ85 1726 aaKnown RBP15.17■□□□□ 0.02
PSPC1-207ENST00000635251 THOC2Q8NI27 1593 aaKnown RBP15.17■□□□□ 0.02
PSPC1-207ENST00000635251 MYT1Q01538 1121 aa15.17■□□□□ 0.02
PSPC1-207ENST00000635251 EHBP1L1Q8N3D4 1523 aa15.16■□□□□ 0.02
PSPC1-207ENST00000635251 ANP32CO43423 234 aa15.15■□□□□ 0.02
PSPC1-207ENST00000635251 NAIPQ13075 1403 aa15.13■□□□□ 0.01
PSPC1-207ENST00000635251 KIF21AQ7Z4S6 1674 aa15.11■□□□□ 0.01
PSPC1-207ENST00000635251 UGGT2Q9NYU1 1516 aa15.1■□□□□ 0.01
PSPC1-207ENST00000635251 CCER2I3L3R5 266 aa15.1■□□□□ 0.01
PSPC1-207ENST00000635251 RRP7BPQ9NSQ0 103 aa15.09■□□□□ 0.01
PSPC1-207ENST00000635251 CHIC2Q9UKJ5 165 aa15.09■□□□□ 0.01
PSPC1-207ENST00000635251 TARBP1Q13395 1621 aaKnown RBP15.08■□□□□ 0.01
PSPC1-207ENST00000635251 HECW1Q76N89 1606 aa15.07■□□□□ 0
PSPC1-207ENST00000635251 MAGI3Q5TCQ9 1506 aa15.07■□□□□ 0
PSPC1-207ENST00000635251 TRIM52Q96A61 297 aa15.06■□□□□ 0
PSPC1-207ENST00000635251 ARHGEF11O15085 1522 aa15.06■□□□□ 0
PSPC1-207ENST00000635251 BCANQ96GW7 911 aa15.05■□□□□ 0
PSPC1-207ENST00000635251 PBRM1Q86U86 1689 aa15.05■□□□□ -0
PSPC1-207ENST00000635251 FKBP8Q14318 412 aa15.05■□□□□ -0
PSPC1-207ENST00000635251 IQGAP2Q13576 1575 aa15.04■□□□□ -0
PSPC1-207ENST00000635251 TCOF1Q13428 1488 aaKnown RBP15.04■□□□□ -0
PSPC1-207ENST00000635251 ARID3CA6NKF2 412 aa15.03■□□□□ -0
PSPC1-207ENST00000635251 EPRSP07814 1512 aaKnown RBP15.03■□□□□ -0
PSPC1-207ENST00000635251 NEFLP07196 543 aa15.02□□□□□ -0.01
PSPC1-207ENST00000635251 TSHZ2Q9NRE2 1034 aa15.01□□□□□ -0.01
PSPC1-207ENST00000635251 GCC2Q8IWJ2 1684 aa15□□□□□ -0.01
PSPC1-207ENST00000635251 ADAMTS12P58397 1594 aa15□□□□□ -0.01
PSPC1-207ENST00000635251 CDK13Q14004 1512 aaKnown RBP15□□□□□ -0.01
PSPC1-207ENST00000635251 MIA2Q96PC5 1412 aa14.98□□□□□ -0.01
PSPC1-207ENST00000635251 KDM5BQ9UGL1 1544 aa14.98□□□□□ -0.01
PSPC1-207ENST00000635251 AKNAQ7Z591 1439 aa14.98□□□□□ -0.01
PSPC1-207ENST00000635251 WDR62O43379 1518 aa14.97□□□□□ -0.01
PSPC1-207ENST00000635251 MRC2Q9UBG0 1479 aa14.96□□□□□ -0.01
PSPC1-207ENST00000635251 HSPA5P11021 654 aaKnown RBP14.96□□□□□ -0.01
PSPC1-207ENST00000635251 MPHOSPH9Q99550 1183 aa14.96□□□□□ -0.01
PSPC1-207ENST00000635251 KDM6BO15054 1643 aa14.95□□□□□ -0.02
PSPC1-207ENST00000635251 DENND4BO75064 1496 aaPredicted RBP14.94□□□□□ -0.02
PSPC1-207ENST00000635251 EIF4G2P78344 907 aaKnown RBP eCLIP14.93□□□□□ -0.02
PSPC1-207ENST00000635251 FOXD1Q16676 465 aa14.91□□□□□ -0.02
PSPC1-207ENST00000635251 WASHC2AQ641Q2 1341 aa14.91□□□□□ -0.02
PSPC1-207ENST00000635251 SLC24A1O60721 1099 aa14.9□□□□□ -0.02
PSPC1-207ENST00000635251 L3MBTL2Q969R5 705 aa14.9□□□□□ -0.02
PSPC1-207ENST00000635251 DAPK1P53355 1430 aa14.89□□□□□ -0.03
PSPC1-207ENST00000635251 HNRNPUQ00839 825 aaKnown RBP eCLIP14.89□□□□□ -0.03
PSPC1-207ENST00000635251 IFT140Q96RY7 1462 aa14.89□□□□□ -0.03
PSPC1-207ENST00000635251 ZNF608Q9ULD9 1512 aaPredicted RBP14.88□□□□□ -0.03
PSPC1-207ENST00000635251 KIAA0586Q9BVV6 1533 aa14.88□□□□□ -0.03
PSPC1-207ENST00000635251 KIAA0556O60303 1618 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms