RNA–Protein interactions for RNA: ENST00000632897.1

LIMS4-204, Transcript of LIM zinc finger domain containing 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS4, Length 1,460 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-204ENST00000632897 MAGI1Q96QZ7 1491 aaPredicted RBP22.22■■□□□ 1.15
LIMS4-204ENST00000632897 GAPVD1Q14C86 1478 aa22.21■■□□□ 1.15
LIMS4-204ENST00000632897 GRIN2BQ13224 1484 aa22.2■■□□□ 1.14
LIMS4-204ENST00000632897 SNAPC4Q5SXM2 1469 aa22.2■■□□□ 1.14
LIMS4-204ENST00000632897 ARAP1Q96P48 1450 aa22.15■■□□□ 1.14
LIMS4-204ENST00000632897 PBRM1Q86U86 1689 aa22.14■■□□□ 1.13
LIMS4-204ENST00000632897 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
LIMS4-204ENST00000632897 SYNJ2O15056 1496 aa22.11■■□□□ 1.13
LIMS4-204ENST00000632897 ARHGAP35Q9NRY4 1499 aa22.09■■□□□ 1.13
LIMS4-204ENST00000632897 CLASP1Q7Z460 1538 aa22.07■■□□□ 1.12
LIMS4-204ENST00000632897 RANGAP1P46060 587 aaPredicted RBP22.07■■□□□ 1.12
LIMS4-204ENST00000632897 CTTNBP2Q8WZ74 1663 aa22.06■■□□□ 1.12
LIMS4-204ENST00000632897 CYB5RLQ6IPT4 315 aa22.06■■□□□ 1.12
LIMS4-204ENST00000632897 PPARGC1BQ86YN6 1023 aaKnown RBP22.06■■□□□ 1.12
LIMS4-204ENST00000632897 EFCAB5A4FU69 1503 aa22.01■■□□□ 1.11
LIMS4-204ENST00000632897 FHAD1B1AJZ9 1412 aa22■■□□□ 1.11
LIMS4-204ENST00000632897 ADAMTS12P58397 1594 aa22■■□□□ 1.11
LIMS4-204ENST00000632897 APLP2Q06481 763 aa22■■□□□ 1.11
LIMS4-204ENST00000632897 HRCP23327 699 aa21.98■■□□□ 1.11
LIMS4-204ENST00000632897 GRIN2AQ12879 1464 aa21.89■■□□□ 1.1
LIMS4-204ENST00000632897 MAP3K1Q13233 1512 aa21.87■■□□□ 1.09
LIMS4-204ENST00000632897 SAMD9Q5K651 1589 aa21.85■■□□□ 1.09
LIMS4-204ENST00000632897 TRHP20396 242 aaPredicted RBP21.83■■□□□ 1.09
LIMS4-204ENST00000632897 TTBK1Q5TCY1 1321 aaPredicted RBP21.83■■□□□ 1.09
LIMS4-204ENST00000632897 NUP160Q12769 1436 aa21.8■■□□□ 1.08
LIMS4-204ENST00000632897 FHOD3Q2V2M9 1422 aa21.8■■□□□ 1.08
LIMS4-204ENST00000632897 IQGAP2Q13576 1575 aa21.79■■□□□ 1.08
LIMS4-204ENST00000632897 FYCO1Q9BQS8 1478 aa21.78■■□□□ 1.08
LIMS4-204ENST00000632897 FMN1Q68DA7 1419 aa21.78■■□□□ 1.08
LIMS4-204ENST00000632897 PCF11O94913 1555 aaKnown RBP21.77■■□□□ 1.08
LIMS4-204ENST00000632897 TIAM1Q13009 1591 aa21.77■■□□□ 1.08
LIMS4-204ENST00000632897 CEP170Q5SW79 1584 aa21.77■■□□□ 1.08
LIMS4-204ENST00000632897 CASKIN1Q8WXD9 1431 aa21.76■■□□□ 1.07
LIMS4-204ENST00000632897 CFAP43Q8NDM7 1665 aa21.74■■□□□ 1.07
LIMS4-204ENST00000632897 SHROOM2Q13796 1616 aa21.72■■□□□ 1.07
LIMS4-204ENST00000632897 P3H3Q8IVL6 736 aa21.71■■□□□ 1.07
LIMS4-204ENST00000632897 KIAA0586Q9BVV6 1533 aa21.71■■□□□ 1.07
LIMS4-204ENST00000632897 UGGT2Q9NYU1 1516 aa21.71■■□□□ 1.07
LIMS4-204ENST00000632897 KANK4Q5T7N3 995 aaPredicted RBP21.71■■□□□ 1.07
LIMS4-204ENST00000632897 ZEB1P37275 1124 aaPredicted RBP21.69■■□□□ 1.06
LIMS4-204ENST00000632897 LRRC9Q6ZRR7 1453 aa21.66■■□□□ 1.06
LIMS4-204ENST00000632897 RRBP1Q9P2E9 1410 aaKnown RBP21.62■■□□□ 1.05
LIMS4-204ENST00000632897 ERCC6L2Q5T890 1561 aa21.62■■□□□ 1.05
LIMS4-204ENST00000632897 PRG4Q92954 1404 aaPredicted RBP21.57■■□□□ 1.04
LIMS4-204ENST00000632897 KIAA0556O60303 1618 aa21.56■■□□□ 1.04
LIMS4-204ENST00000632897 JPH4Q96JJ6 628 aa21.54■■□□□ 1.04
LIMS4-204ENST00000632897 DISP1Q96F81 1524 aa21.54■■□□□ 1.04
LIMS4-204ENST00000632897 CCDC18Q5T9S5 1454 aa21.53■■□□□ 1.04
LIMS4-204ENST00000632897 HECW1Q76N89 1606 aa21.53■■□□□ 1.04
LIMS4-204ENST00000632897 ATP1B4Q9UN42 357 aaPredicted RBP21.52■■□□□ 1.04
LIMS4-204ENST00000632897 CCNB3Q8WWL7 1395 aa21.51■■□□□ 1.03
LIMS4-204ENST00000632897 LRRIQ1Q96JM4 1722 aa21.5■■□□□ 1.03
LIMS4-204ENST00000632897 HNRNPUL2Q1KMD3 747 aaKnown RBP21.47■■□□□ 1.03
LIMS4-204ENST00000632897 CCER1Q8TC90 406 aaPredicted RBP21.45■■□□□ 1.03
LIMS4-204ENST00000632897 EHBP1L1Q8N3D4 1523 aa21.45■■□□□ 1.02
LIMS4-204ENST00000632897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.45■■□□□ 1.02
LIMS4-204ENST00000632897 PHLDB1Q86UU1 1377 aa21.44■■□□□ 1.02
LIMS4-204ENST00000632897 CARMIL2Q6F5E8 1435 aa21.44■■□□□ 1.02
LIMS4-204ENST00000632897 MTUS2Q5JR59 1369 aa21.43■■□□□ 1.02
LIMS4-204ENST00000632897 NPM1P06748 294 aaKnown RBP eCLIP21.41■■□□□ 1.02
LIMS4-204ENST00000632897 EPRSP07814 1512 aaKnown RBP21.41■■□□□ 1.02
LIMS4-204ENST00000632897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.39■■□□□ 1.01
LIMS4-204ENST00000632897 RAPGEF6Q8TEU7 1601 aa21.38■■□□□ 1.01
LIMS4-204ENST00000632897 SUPT6HQ7KZ85 1726 aaKnown RBP21.38■■□□□ 1.01
LIMS4-204ENST00000632897 KIF13AQ9H1H9 1805 aa21.36■■□□□ 1.01
LIMS4-204ENST00000632897 MAPKBP1O60336 1514 aa21.35■■□□□ 1.01
LIMS4-204ENST00000632897 NCOA2Q15596 1464 aa21.33■■□□□ 1.01
LIMS4-204ENST00000632897 MAGI3Q5TCQ9 1506 aa21.32■■□□□ 1
LIMS4-204ENST00000632897 NUP153P49790 1475 aaKnown RBP21.32■■□□□ 1
LIMS4-204ENST00000632897 ADCY10Q96PN6 1610 aa21.32■■□□□ 1
LIMS4-204ENST00000632897 FGD6Q6ZV73 1430 aa21.31■■□□□ 1
LIMS4-204ENST00000632897 CDK13Q14004 1512 aaKnown RBP21.31■■□□□ 1
LIMS4-204ENST00000632897 MYOM3Q5VTT5 1437 aa21.28■■□□□ 1
LIMS4-204ENST00000632897 ABCC10Q5T3U5 1492 aa21.28■■□□□ 1
LIMS4-204ENST00000632897 PTPRGP23470 1445 aa21.26■□□□□ 0.99
LIMS4-204ENST00000632897 ABCA8O94911 1581 aa21.24■□□□□ 0.99
LIMS4-204ENST00000632897 DIP2BQ9P265 1576 aa21.24■□□□□ 0.99
LIMS4-204ENST00000632897 FAM50AQ14320 339 aaKnown RBP21.23■□□□□ 0.99
LIMS4-204ENST00000632897 PLB1Q6P1J6 1458 aa21.23■□□□□ 0.99
LIMS4-204ENST00000632897 FAM69CQ0P6D2 419 aa21.22■□□□□ 0.99
LIMS4-204ENST00000632897 CDK11AQ9UQ88 783 aaPredicted RBP21.21■□□□□ 0.99
LIMS4-204ENST00000632897 AEBP2Q6ZN18 517 aaPredicted RBP21.2■□□□□ 0.98
LIMS4-204ENST00000632897 CLSPNQ9HAW4 1339 aa21.19■□□□□ 0.98
LIMS4-204ENST00000632897 TCOF1Q13428 1488 aaKnown RBP21.18■□□□□ 0.98
LIMS4-204ENST00000632897 PTPN23Q9H3S7 1636 aa21.18■□□□□ 0.98
LIMS4-204ENST00000632897 ITGAEP38570 1179 aa21.18■□□□□ 0.98
LIMS4-204ENST00000632897 MIA2Q96PC5 1412 aa21.18■□□□□ 0.98
LIMS4-204ENST00000632897 TROQ12816 1431 aaPredicted RBP21.16■□□□□ 0.98
LIMS4-204ENST00000632897 ABCC2Q92887 1545 aa21.16■□□□□ 0.98
LIMS4-204ENST00000632897 SETD5Q9C0A6 1442 aa21.16■□□□□ 0.98
LIMS4-204ENST00000632897 UHRF1BP1LA0JNW5 1464 aa21.15■□□□□ 0.98
LIMS4-204ENST00000632897 DHX57Q6P158 1386 aaKnown RBP21.14■□□□□ 0.98
LIMS4-204ENST00000632897 RAB3GAP2Q9H2M9 1393 aa21.12■□□□□ 0.97
LIMS4-204ENST00000632897 ARID3CA6NKF2 412 aa21.12■□□□□ 0.97
LIMS4-204ENST00000632897 UACAQ9BZF9 1416 aa21.11■□□□□ 0.97
LIMS4-204ENST00000632897 TSPOAP1O95153 1857 aa21.08■□□□□ 0.97
LIMS4-204ENST00000632897 KDM6BO15054 1643 aa21.08■□□□□ 0.97
LIMS4-204ENST00000632897 ATP10BO94823 1461 aa21.08■□□□□ 0.96
LIMS4-204ENST00000632897 ITSN2Q9NZM3 1697 aa21.06■□□□□ 0.96
LIMS4-204ENST00000632897 ASXL2Q76L83 1435 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms