RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 CC2D2AQ9P2K1 1620 aa17.88■□□□□ 0.45
MSH6-215ENST00000622629 RRP7BPQ9NSQ0 103 aa17.86■□□□□ 0.45
MSH6-215ENST00000622629 CARMIL1Q5VZK9 1371 aa17.85■□□□□ 0.45
MSH6-215ENST00000622629 PDS5BQ9NTI5 1447 aa17.84■□□□□ 0.45
MSH6-215ENST00000622629 CLSPNQ9HAW4 1339 aa17.84■□□□□ 0.45
MSH6-215ENST00000622629 HNRNPUQ00839 825 aaKnown RBP eCLIP17.84■□□□□ 0.451e-6■□□□□ 11
MSH6-215ENST00000622629 CDK11AQ9UQ88 783 aaPredicted RBP17.82■□□□□ 0.44
MSH6-215ENST00000622629 TDRD9Q8NDG6 1382 aaKnown RBP17.78■□□□□ 0.44
MSH6-215ENST00000622629 FAM9BQ8IZU0 186 aa17.76■□□□□ 0.43
MSH6-215ENST00000622629 NESP48681 1621 aa17.75■□□□□ 0.43
MSH6-215ENST00000622629 FANCD2Q9BXW9 1451 aa17.73■□□□□ 0.43
MSH6-215ENST00000622629 FHAD1B1AJZ9 1412 aa17.69■□□□□ 0.42
MSH6-215ENST00000622629 RAB3GAP2Q9H2M9 1393 aa17.68■□□□□ 0.42
MSH6-215ENST00000622629 IRX6P78412 446 aaPredicted RBP17.68■□□□□ 0.42
MSH6-215ENST00000622629 SLC4A1APQ9BWU0 796 aaKnown RBP17.66■□□□□ 0.42
MSH6-215ENST00000622629 EIF4G2P78344 907 aaKnown RBP eCLIP17.65■□□□□ 0.42
MSH6-215ENST00000622629 SETD5Q9C0A6 1442 aa17.64■□□□□ 0.41
MSH6-215ENST00000622629 MRS2Q9HD23 443 aa17.63■□□□□ 0.41
MSH6-215ENST00000622629 DHX57Q6P158 1386 aaKnown RBP17.63■□□□□ 0.41
MSH6-215ENST00000622629 SUPT16HQ9Y5B9 1047 aaKnown RBP17.61■□□□□ 0.41
MSH6-215ENST00000622629 KDM2AQ9Y2K7 1162 aa17.6■□□□□ 0.41
MSH6-215ENST00000622629 HMGXB3Q12766 1538 aa17.58■□□□□ 0.41
MSH6-215ENST00000622629 SLC24A1O60721 1099 aa17.58■□□□□ 0.41
MSH6-215ENST00000622629 SYNJ1O43426 1573 aa17.57■□□□□ 0.4
MSH6-215ENST00000622629 DAXXQ9UER7 740 aaPredicted RBP17.57■□□□□ 0.4
MSH6-215ENST00000622629 SALL2Q9Y467 1007 aaPredicted RBP17.57■□□□□ 0.4
MSH6-215ENST00000622629 SENP3-EIF4A1A0A087X0R7 540 aa17.56■□□□□ 0.4
MSH6-215ENST00000622629 CFTRP13569 1480 aa17.55■□□□□ 0.4
MSH6-215ENST00000622629 FHOD3Q2V2M9 1422 aa17.55■□□□□ 0.4
MSH6-215ENST00000622629 TSPY4P0CV99 314 aa17.55■□□□□ 0.4
MSH6-215ENST00000622629 TSPY10P0CW01 314 aa17.55■□□□□ 0.4
MSH6-215ENST00000622629 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.54■□□□□ 0.41e-10■■■□□ 14.8
MSH6-215ENST00000622629 KIF21BO75037 1637 aa17.53■□□□□ 0.4
MSH6-215ENST00000622629 ARHGAP35Q9NRY4 1499 aa17.52■□□□□ 0.4
MSH6-215ENST00000622629 RAD54L2Q9Y4B4 1467 aa17.52■□□□□ 0.4
MSH6-215ENST00000622629 TMC1Q8TDI8 760 aa17.51■□□□□ 0.39
MSH6-215ENST00000622629 KCNH8Q96L42 1107 aa17.51■□□□□ 0.39
MSH6-215ENST00000622629 CFDP1Q9UEE9 299 aaPredicted RBP17.51■□□□□ 0.39
MSH6-215ENST00000622629 TIMELESSQ9UNS1 1208 aa17.5■□□□□ 0.39
MSH6-215ENST00000622629 IGF1RP08069 1367 aa17.5■□□□□ 0.39
MSH6-215ENST00000622629 FOXD1Q16676 465 aa17.48■□□□□ 0.39
MSH6-215ENST00000622629 PPP1R15AO75807 674 aaPredicted RBP17.48■□□□□ 0.39
MSH6-215ENST00000622629 FGD5Q6ZNL6 1462 aa17.48■□□□□ 0.39
MSH6-215ENST00000622629 RTL5Q5HYW3 569 aaPredicted RBP17.46■□□□□ 0.38
MSH6-215ENST00000622629 PLEKHD1A6NEE1 506 aa17.45■□□□□ 0.38
MSH6-215ENST00000622629 ARAP1Q96P48 1450 aa17.43■□□□□ 0.38
MSH6-215ENST00000622629 FMN1Q68DA7 1419 aa17.42■□□□□ 0.38
MSH6-215ENST00000622629 NPM1P06748 294 aaKnown RBP eCLIP17.41■□□□□ 0.38
MSH6-215ENST00000622629 RGL3Q3MIN7 710 aa17.41■□□□□ 0.38
MSH6-215ENST00000622629 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
MSH6-215ENST00000622629 HSPA5P11021 654 aaKnown RBP17.4■□□□□ 0.38
MSH6-215ENST00000622629 CCDC136Q96JN2 1154 aa17.39■□□□□ 0.37
MSH6-215ENST00000622629 AQRO60306 1485 aaKnown RBP eCLIP17.39■□□□□ 0.378e-7■■■■□ 22.6
MSH6-215ENST00000622629 NPM2Q86SE8 214 aaKnown RBP17.37■□□□□ 0.37
MSH6-215ENST00000622629 CCER2I3L3R5 266 aa17.36■□□□□ 0.37
MSH6-215ENST00000622629 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
MSH6-215ENST00000622629 PHLDB1Q86UU1 1377 aa17.34■□□□□ 0.37
MSH6-215ENST00000622629 MPHOSPH9Q99550 1183 aa17.34■□□□□ 0.37
MSH6-215ENST00000622629 ANP32AP39687 249 aaKnown RBP17.33■□□□□ 0.36
MSH6-215ENST00000622629 CARD11Q9BXL7 1154 aa17.33■□□□□ 0.36
MSH6-215ENST00000622629 CHGAP10645 457 aaKnown RBP17.32■□□□□ 0.36
MSH6-215ENST00000622629 CUX1P39880 1505 aa17.31■□□□□ 0.36
MSH6-215ENST00000622629 L3MBTL2Q969R5 705 aa17.3■□□□□ 0.36
MSH6-215ENST00000622629 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
MSH6-215ENST00000622629 TOP2BQ02880 1626 aa17.29■□□□□ 0.36
MSH6-215ENST00000622629 GAPVD1Q14C86 1478 aa17.29■□□□□ 0.36
MSH6-215ENST00000622629 ERICH3Q5RHP9 1530 aa17.28■□□□□ 0.36
MSH6-215ENST00000622629 MRC2Q9UBG0 1479 aa17.26■□□□□ 0.35
MSH6-215ENST00000622629 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
MSH6-215ENST00000622629 CANXP27824 592 aaKnown RBP17.25■□□□□ 0.35
MSH6-215ENST00000622629 RRBP1Q9P2E9 1410 aaKnown RBP17.25■□□□□ 0.35
MSH6-215ENST00000622629 PKD2Q13563 968 aa17.24■□□□□ 0.35
MSH6-215ENST00000622629 JPH4Q96JJ6 628 aa17.24■□□□□ 0.35
MSH6-215ENST00000622629 LRRC9Q6ZRR7 1453 aa17.24■□□□□ 0.35
MSH6-215ENST00000622629 B4GALNT3Q6L9W6 998 aa17.24■□□□□ 0.35
MSH6-215ENST00000622629 TSHZ2Q9NRE2 1034 aa17.23■□□□□ 0.35
MSH6-215ENST00000622629 DCAF11Q8TEB1 546 aa17.23■□□□□ 0.35
MSH6-215ENST00000622629 ANP32EQ9BTT0 268 aa17.2■□□□□ 0.34
MSH6-215ENST00000622629 LAMC3Q9Y6N6 1575 aa17.2■□□□□ 0.34
MSH6-215ENST00000622629 NBR1Q14596 966 aa17.19■□□□□ 0.34
MSH6-215ENST00000622629 PPP4R2Q9NY27 417 aa17.19■□□□□ 0.34
MSH6-215ENST00000622629 CCDC18Q5T9S5 1454 aa17.18■□□□□ 0.34
MSH6-215ENST00000622629 WDR43Q15061 677 aaKnown RBP eCLIP17.17■□□□□ 0.342e-9■□□□□ 9.3
MSH6-215ENST00000622629 RBM19Q9Y4C8 960 aaKnown RBP17.17■□□□□ 0.34
MSH6-215ENST00000622629 FGD6Q6ZV73 1430 aa17.16■□□□□ 0.34
MSH6-215ENST00000622629 URB2Q14146 1524 aaKnown RBP17.13■□□□□ 0.33
MSH6-215ENST00000622629 SENP3Q9H4L4 574 aaPredicted RBP17.13■□□□□ 0.33
MSH6-215ENST00000622629 BCL11AQ9H165 835 aa17.13■□□□□ 0.33
MSH6-215ENST00000622629 ZBTB47Q9UFB7 747 aaPredicted RBP17.12■□□□□ 0.33
MSH6-215ENST00000622629 NUP155O75694 1391 aa17.11■□□□□ 0.33
MSH6-215ENST00000622629 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
MSH6-215ENST00000622629 CC2D1BQ5T0F9 858 aaKnown RBP17.11■□□□□ 0.33
MSH6-215ENST00000622629 OSCARQ8IYS5 282 aa17.1■□□□□ 0.33
MSH6-215ENST00000622629 CARMIL2Q6F5E8 1435 aa17.1■□□□□ 0.33
MSH6-215ENST00000622629 ZNF644Q9H582 1327 aaPredicted RBP17.09■□□□□ 0.33
MSH6-215ENST00000622629 CASKIN1Q8WXD9 1431 aa17.08■□□□□ 0.33
MSH6-215ENST00000622629 PLPPR3Q6T4P5 718 aa17.08■□□□□ 0.32
MSH6-215ENST00000622629 GRIN2BQ13224 1484 aa17.07■□□□□ 0.32
MSH6-215ENST00000622629 IFT140Q96RY7 1462 aa17.07■□□□□ 0.32
MSH6-215ENST00000622629 MYOM3Q5VTT5 1437 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms