RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 KIF27Q86VH2 1401 aa14.56□□□□□ -0.08
VPS39-214ENST00000614932 NESP48681 1621 aa14.55□□□□□ -0.08
VPS39-214ENST00000614932 CUX2O14529 1486 aa14.54□□□□□ -0.08
VPS39-214ENST00000614932 PLEKHG5O94827 1062 aa14.54□□□□□ -0.08
VPS39-214ENST00000614932 VPS8Q8N3P4 1428 aa14.53□□□□□ -0.08
VPS39-214ENST00000614932 BCANQ96GW7 911 aa14.53□□□□□ -0.08
VPS39-214ENST00000614932 PRXQ9BXM0 1461 aa14.52□□□□□ -0.08
VPS39-214ENST00000614932 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.51□□□□□ -0.09
VPS39-214ENST00000614932 FGD5Q6ZNL6 1462 aa14.49□□□□□ -0.09
VPS39-214ENST00000614932 P3H3Q8IVL6 736 aa14.49□□□□□ -0.09
VPS39-214ENST00000614932 KANK4Q5T7N3 995 aaPredicted RBP14.48□□□□□ -0.09
VPS39-214ENST00000614932 FANCD2Q9BXW9 1451 aa14.48□□□□□ -0.09
VPS39-214ENST00000614932 PODXL2Q9NZ53 605 aa14.47□□□□□ -0.09
VPS39-214ENST00000614932 IGF1RP08069 1367 aa14.46□□□□□ -0.09
VPS39-214ENST00000614932 RAD54L2Q9Y4B4 1467 aa14.45□□□□□ -0.1
VPS39-214ENST00000614932 FKBP8Q14318 412 aa14.45□□□□□ -0.1
VPS39-214ENST00000614932 ATP1B4Q9UN42 357 aaPredicted RBP14.45□□□□□ -0.1
VPS39-214ENST00000614932 ARAP1Q96P48 1450 aa14.44□□□□□ -0.1
VPS39-214ENST00000614932 ERICH3Q5RHP9 1530 aa14.42□□□□□ -0.1
VPS39-214ENST00000614932 ITGAEP38570 1179 aa14.42□□□□□ -0.1
VPS39-214ENST00000614932 CARMIL1Q5VZK9 1371 aa14.41□□□□□ -0.1
VPS39-214ENST00000614932 IL27Q8NEV9 243 aa14.39□□□□□ -0.11
VPS39-214ENST00000614932 PRDM2Q13029 1718 aa14.38□□□□□ -0.11
VPS39-214ENST00000614932 ARHGAP35Q9NRY4 1499 aa14.36□□□□□ -0.11
VPS39-214ENST00000614932 RTN4Q9NQC3 1192 aaKnown RBP14.34□□□□□ -0.11
VPS39-214ENST00000614932 TOPBP1Q92547 1522 aa14.34□□□□□ -0.11
VPS39-214ENST00000614932 TDRD9Q8NDG6 1382 aaKnown RBP14.33□□□□□ -0.11
VPS39-214ENST00000614932 POLA1P09884 1462 aaPredicted RBP14.33□□□□□ -0.11
VPS39-214ENST00000614932 NEFLP07196 543 aa14.33□□□□□ -0.12
VPS39-214ENST00000614932 DNMBPQ6XZF7 1577 aa14.28□□□□□ -0.12
VPS39-214ENST00000614932 URB2Q14146 1524 aaKnown RBP14.28□□□□□ -0.12
VPS39-214ENST00000614932 NBR1Q14596 966 aa14.26□□□□□ -0.13
VPS39-214ENST00000614932 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
VPS39-214ENST00000614932 FHOD3Q2V2M9 1422 aa14.24□□□□□ -0.13
VPS39-214ENST00000614932 ABCA10Q8WWZ4 1543 aa14.22□□□□□ -0.13
VPS39-214ENST00000614932 FAM50AQ14320 339 aaKnown RBP14.21□□□□□ -0.14
VPS39-214ENST00000614932 PDS5BQ9NTI5 1447 aa14.21□□□□□ -0.14
VPS39-214ENST00000614932 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
VPS39-214ENST00000614932 RTL5Q5HYW3 569 aaPredicted RBP14.2□□□□□ -0.14
VPS39-214ENST00000614932 NOP58Q9Y2X3 529 aaKnown RBP14.2□□□□□ -0.14
VPS39-214ENST00000614932 GLIPR1L2Q4G1C9 344 aa14.19□□□□□ -0.14
VPS39-214ENST00000614932 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
VPS39-214ENST00000614932 ARID3CA6NKF2 412 aa14.17□□□□□ -0.14
VPS39-214ENST00000614932 CCNB3Q8WWL7 1395 aa14.17□□□□□ -0.14
VPS39-214ENST00000614932 GAPVD1Q14C86 1478 aa14.14□□□□□ -0.15
VPS39-214ENST00000614932 ZMYND15Q9H091 742 aa14.14□□□□□ -0.15
VPS39-214ENST00000614932 AQRO60306 1485 aaKnown RBP eCLIP14.13□□□□□ -0.15
VPS39-214ENST00000614932 PHLDB1Q86UU1 1377 aa14.12□□□□□ -0.15
VPS39-214ENST00000614932 RRBP1Q9P2E9 1410 aaKnown RBP14.11□□□□□ -0.15
VPS39-214ENST00000614932 C11orf95C9JLR9 678 aaPredicted RBP14.11□□□□□ -0.15
VPS39-214ENST00000614932 DHX57Q6P158 1386 aaKnown RBP14.11□□□□□ -0.15
VPS39-214ENST00000614932 PCF11O94913 1555 aaKnown RBP14.11□□□□□ -0.15
VPS39-214ENST00000614932 TIAM1Q13009 1591 aa14.11□□□□□ -0.15
VPS39-214ENST00000614932 LRRC9Q6ZRR7 1453 aa14.09□□□□□ -0.15
VPS39-214ENST00000614932 PAK3O75914 559 aaPredicted RBP14.09□□□□□ -0.15
VPS39-214ENST00000614932 KCNH8Q96L42 1107 aa14.09□□□□□ -0.15
VPS39-214ENST00000614932 FHAD1B1AJZ9 1412 aa14.09□□□□□ -0.15
VPS39-214ENST00000614932 RSPH6AQ9H0K4 717 aa14.08□□□□□ -0.16
VPS39-214ENST00000614932 VSIG10Q8N0Z9 540 aa14.06□□□□□ -0.16
VPS39-214ENST00000614932 TIMELESSQ9UNS1 1208 aa14.05□□□□□ -0.16
VPS39-214ENST00000614932 CUL7Q14999 1698 aa14.05□□□□□ -0.16
VPS39-214ENST00000614932 WDR97A6NE52 1622 aa14.04□□□□□ -0.16
VPS39-214ENST00000614932 RAB3GAP2Q9H2M9 1393 aa14.04□□□□□ -0.16
VPS39-214ENST00000614932 ABCA5Q8WWZ7 1642 aa14.04□□□□□ -0.16
VPS39-214ENST00000614932 WASHC2AQ641Q2 1341 aa14.03□□□□□ -0.16
VPS39-214ENST00000614932 FBLN2P98095 1184 aa14.02□□□□□ -0.17
VPS39-214ENST00000614932 ZNF608Q9ULD9 1512 aaPredicted RBP14.02□□□□□ -0.17
VPS39-214ENST00000614932 CTTNBP2Q8WZ74 1663 aa14.01□□□□□ -0.17
VPS39-214ENST00000614932 MTUS2Q5JR59 1369 aa14.01□□□□□ -0.17
VPS39-214ENST00000614932 WASHC2CQ9Y4E1 1318 aa14□□□□□ -0.17
VPS39-214ENST00000614932 TARBP1Q13395 1621 aaKnown RBP14□□□□□ -0.17
VPS39-214ENST00000614932 CASKIN1Q8WXD9 1431 aa13.99□□□□□ -0.17
VPS39-214ENST00000614932 SIN3AQ96ST3 1273 aa13.99□□□□□ -0.17
VPS39-214ENST00000614932 MRC2Q9UBG0 1479 aa13.99□□□□□ -0.17
VPS39-214ENST00000614932 FMN1Q68DA7 1419 aa13.98□□□□□ -0.17
VPS39-214ENST00000614932 FYCO1Q9BQS8 1478 aa13.97□□□□□ -0.17
VPS39-214ENST00000614932 EFCAB5A4FU69 1503 aa13.97□□□□□ -0.17
VPS39-214ENST00000614932 ERCC6Q03468 1493 aa13.97□□□□□ -0.17
VPS39-214ENST00000614932 MAP3K1Q13233 1512 aa13.95□□□□□ -0.18
VPS39-214ENST00000614932 SETD5Q9C0A6 1442 aa13.94□□□□□ -0.18
VPS39-214ENST00000614932 CHIC2Q9UKJ5 165 aa13.94□□□□□ -0.18
VPS39-214ENST00000614932 SNAPC4Q5SXM2 1469 aa13.94□□□□□ -0.18
VPS39-214ENST00000614932 CFAP43Q8NDM7 1665 aa13.94□□□□□ -0.18
VPS39-214ENST00000614932 BRPF3Q9ULD4 1205 aa13.94□□□□□ -0.18
VPS39-214ENST00000614932 IPO9Q96P70 1041 aaKnown RBP13.93□□□□□ -0.18
VPS39-214ENST00000614932 USP35Q9P2H5 1018 aa13.92□□□□□ -0.18
VPS39-214ENST00000614932 ZBTB47Q9UFB7 747 aaPredicted RBP13.92□□□□□ -0.18
VPS39-214ENST00000614932 PDE4CQ08493 712 aa13.91□□□□□ -0.18
VPS39-214ENST00000614932 FGD1P98174 961 aa13.91□□□□□ -0.18
VPS39-214ENST00000614932 PBRM1Q86U86 1689 aa13.91□□□□□ -0.18
VPS39-214ENST00000614932 GRIN2BQ13224 1484 aa13.9□□□□□ -0.18
VPS39-214ENST00000614932 A0A0U1RQG5 324 aaPredicted RBP13.89□□□□□ -0.19
VPS39-214ENST00000614932 ANP32AP39687 249 aaKnown RBP13.89□□□□□ -0.19
VPS39-214ENST00000614932 HIRIP3Q9BW71 556 aaPredicted RBP13.89□□□□□ -0.19
VPS39-214ENST00000614932 SAMD9Q5K651 1589 aa13.89□□□□□ -0.19
VPS39-214ENST00000614932 CHMP7Q8WUX9 453 aaPredicted RBP13.88□□□□□ -0.19
VPS39-214ENST00000614932 RRP7BPQ9NSQ0 103 aa13.88□□□□□ -0.19
VPS39-214ENST00000614932 FGD6Q6ZV73 1430 aa13.88□□□□□ -0.19
VPS39-214ENST00000614932 TRIM52Q96A61 297 aa13.88□□□□□ -0.19
VPS39-214ENST00000614932 LRRIQ1Q96JM4 1722 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms