RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 CFTRP13569 1480 aa20.08■□□□□ 0.8
COL6A1-207ENST00000612273 ARID3CA6NKF2 412 aa20.06■□□□□ 0.8
COL6A1-207ENST00000612273 FKBP8Q14318 412 aa20.05■□□□□ 0.8
COL6A1-207ENST00000612273 SETD5Q9C0A6 1442 aa20.03■□□□□ 0.8
COL6A1-207ENST00000612273 FHOD3Q2V2M9 1422 aa20.02■□□□□ 0.8
COL6A1-207ENST00000612273 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
COL6A1-207ENST00000612273 CADPSQ9ULU8 1353 aa19.98■□□□□ 0.79
COL6A1-207ENST00000612273 RAD54L2Q9Y4B4 1467 aa19.95■□□□□ 0.78
COL6A1-207ENST00000612273 TSHZ2Q9NRE2 1034 aa19.95■□□□□ 0.78
COL6A1-207ENST00000612273 CHIC2Q9UKJ5 165 aa19.95■□□□□ 0.78
COL6A1-207ENST00000612273 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
COL6A1-207ENST00000612273 MAPKBP1O60336 1514 aa19.94■□□□□ 0.78
COL6A1-207ENST00000612273 LRRC9Q6ZRR7 1453 aa19.94■□□□□ 0.78
COL6A1-207ENST00000612273 WDR97A6NE52 1622 aa19.92■□□□□ 0.78
COL6A1-207ENST00000612273 CNGB1Q14028 1251 aaPredicted RBP19.91■□□□□ 0.78
COL6A1-207ENST00000612273 ANP32CO43423 234 aa19.9■□□□□ 0.78
COL6A1-207ENST00000612273 TIAM1Q13009 1591 aa19.89■□□□□ 0.78
COL6A1-207ENST00000612273 PPP1R15AO75807 674 aaPredicted RBP19.88■□□□□ 0.77
COL6A1-207ENST00000612273 RRP7BPQ9NSQ0 103 aa19.88■□□□□ 0.77
COL6A1-207ENST00000612273 NEFLP07196 543 aa19.86■□□□□ 0.77
COL6A1-207ENST00000612273 IRX6P78412 446 aaPredicted RBP19.86■□□□□ 0.77
COL6A1-207ENST00000612273 TONSLQ96HA7 1378 aa19.86■□□□□ 0.77
COL6A1-207ENST00000612273 MTUS2Q5JR59 1369 aa19.85■□□□□ 0.77
COL6A1-207ENST00000612273 FHAD1B1AJZ9 1412 aa19.84■□□□□ 0.77
COL6A1-207ENST00000612273 TDRD9Q8NDG6 1382 aaKnown RBP19.84■□□□□ 0.77
COL6A1-207ENST00000612273 MYT1Q01538 1121 aa19.84■□□□□ 0.77
COL6A1-207ENST00000612273 NESP48681 1621 aa19.81■□□□□ 0.76
COL6A1-207ENST00000612273 FANCD2Q9BXW9 1451 aa19.8■□□□□ 0.76
COL6A1-207ENST00000612273 DNAJC5BQ9UF47 199 aa19.78■□□□□ 0.76
COL6A1-207ENST00000612273 PCF11O94913 1555 aaKnown RBP19.78■□□□□ 0.76
COL6A1-207ENST00000612273 FOXD1Q16676 465 aa19.78■□□□□ 0.76
COL6A1-207ENST00000612273 HNRNPUQ00839 825 aaKnown RBP eCLIP19.75■□□□□ 0.75
COL6A1-207ENST00000612273 SENP3-EIF4A1A0A087X0R7 540 aa19.71■□□□□ 0.75
COL6A1-207ENST00000612273 PTPRKQ15262 1439 aa19.69■□□□□ 0.74
COL6A1-207ENST00000612273 POLA1P09884 1462 aaPredicted RBP19.68■□□□□ 0.74
COL6A1-207ENST00000612273 POLR3GLQ9BT43 218 aa19.68■□□□□ 0.74
COL6A1-207ENST00000612273 FGD6Q6ZV73 1430 aa19.67■□□□□ 0.74
COL6A1-207ENST00000612273 CCDC18Q5T9S5 1454 aa19.65■□□□□ 0.74
COL6A1-207ENST00000612273 CASKIN1Q8WXD9 1431 aa19.63■□□□□ 0.73
COL6A1-207ENST00000612273 CC2D2AQ9P2K1 1620 aa19.63■□□□□ 0.73
COL6A1-207ENST00000612273 HSPA5P11021 654 aaKnown RBP19.63■□□□□ 0.73
COL6A1-207ENST00000612273 TIMELESSQ9UNS1 1208 aa19.63■□□□□ 0.73
COL6A1-207ENST00000612273 FAM9BQ8IZU0 186 aa19.62■□□□□ 0.73
COL6A1-207ENST00000612273 MAP3K1Q13233 1512 aa19.62■□□□□ 0.73
COL6A1-207ENST00000612273 TOPBP1Q92547 1522 aa19.61■□□□□ 0.73
COL6A1-207ENST00000612273 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.73
COL6A1-207ENST00000612273 CCER2I3L3R5 266 aa19.6■□□□□ 0.73
COL6A1-207ENST00000612273 RBM19Q9Y4C8 960 aaKnown RBP19.6■□□□□ 0.73
COL6A1-207ENST00000612273 CCDC184Q52MB2 194 aa19.59■□□□□ 0.73
COL6A1-207ENST00000612273 FMN1Q68DA7 1419 aa19.59■□□□□ 0.73
COL6A1-207ENST00000612273 ZNF326Q5BKZ1 582 aaKnown RBP19.59■□□□□ 0.73
COL6A1-207ENST00000612273 FYCO1Q9BQS8 1478 aa19.58■□□□□ 0.73
COL6A1-207ENST00000612273 ANP32EQ9BTT0 268 aa19.57■□□□□ 0.72
COL6A1-207ENST00000612273 NCOA2Q15596 1464 aa19.55■□□□□ 0.72
COL6A1-207ENST00000612273 WASHC2AQ641Q2 1341 aa19.54■□□□□ 0.72
COL6A1-207ENST00000612273 ABCA10Q8WWZ4 1543 aa19.54■□□□□ 0.72
COL6A1-207ENST00000612273 L3MBTL2Q969R5 705 aa19.54■□□□□ 0.72
COL6A1-207ENST00000612273 NAIPQ13075 1403 aa19.53■□□□□ 0.72
COL6A1-207ENST00000612273 UACAQ9BZF9 1416 aa19.52■□□□□ 0.72
COL6A1-207ENST00000612273 EIF4G2P78344 907 aaKnown RBP eCLIP19.51■□□□□ 0.71
COL6A1-207ENST00000612273 C11orf95C9JLR9 678 aaPredicted RBP19.5■□□□□ 0.71
COL6A1-207ENST00000612273 MPHOSPH9Q99550 1183 aa19.5■□□□□ 0.71
COL6A1-207ENST00000612273 HFM1A2PYH4 1435 aa19.5■□□□□ 0.71
COL6A1-207ENST00000612273 MYOM3Q5VTT5 1437 aa19.49■□□□□ 0.71
COL6A1-207ENST00000612273 ZNF644Q9H582 1327 aaPredicted RBP19.49■□□□□ 0.71
COL6A1-207ENST00000612273 ZNF777Q9ULD5 760 aaPredicted RBP19.49■□□□□ 0.71
COL6A1-207ENST00000612273 CFAP43Q8NDM7 1665 aa19.49■□□□□ 0.71
COL6A1-207ENST00000612273 DNMBPQ6XZF7 1577 aa19.49■□□□□ 0.71
COL6A1-207ENST00000612273 MRS2Q9HD23 443 aa19.47■□□□□ 0.71
COL6A1-207ENST00000612273 GAPVD1Q14C86 1478 aa19.47■□□□□ 0.71
COL6A1-207ENST00000612273 URB2Q14146 1524 aaKnown RBP19.45■□□□□ 0.7
COL6A1-207ENST00000612273 SNAPC4Q5SXM2 1469 aa19.45■□□□□ 0.7
COL6A1-207ENST00000612273 SLC4A1APQ9BWU0 796 aaKnown RBP19.44■□□□□ 0.7
COL6A1-207ENST00000612273 EFCAB5A4FU69 1503 aa19.43■□□□□ 0.7
COL6A1-207ENST00000612273 FBLN2P98095 1184 aa19.42■□□□□ 0.7
COL6A1-207ENST00000612273 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.41■□□□□ 0.7
COL6A1-207ENST00000612273 PTPN23Q9H3S7 1636 aa19.41■□□□□ 0.7
COL6A1-207ENST00000612273 NBPF8Q3BBV2 869 aa19.41■□□□□ 0.7
COL6A1-207ENST00000612273 PRDM2Q13029 1718 aa19.41■□□□□ 0.7
COL6A1-207ENST00000612273 B4GALNT3Q6L9W6 998 aa19.4■□□□□ 0.7
COL6A1-207ENST00000612273 CDK11AQ9UQ88 783 aaPredicted RBP19.38■□□□□ 0.69
COL6A1-207ENST00000612273 CDK13Q14004 1512 aaKnown RBP19.36■□□□□ 0.69
COL6A1-207ENST00000612273 MAGI3Q5TCQ9 1506 aa19.35■□□□□ 0.69
COL6A1-207ENST00000612273 PRKRIP1Q9H875 184 aaPredicted RBP19.34■□□□□ 0.69
COL6A1-207ENST00000612273 GRIN2BQ13224 1484 aa19.33■□□□□ 0.69
COL6A1-207ENST00000612273 MSH5O43196 834 aa19.33■□□□□ 0.68
COL6A1-207ENST00000612273 ERICH6Q7L0X2 663 aa19.33■□□□□ 0.68
COL6A1-207ENST00000612273 PDS5BQ9NTI5 1447 aa19.32■□□□□ 0.68
COL6A1-207ENST00000612273 CTTNBP2Q8WZ74 1663 aa19.3■□□□□ 0.68
COL6A1-207ENST00000612273 CUL7Q14999 1698 aa19.3■□□□□ 0.68
COL6A1-207ENST00000612273 KDM2AQ9Y2K7 1162 aa19.29■□□□□ 0.68
COL6A1-207ENST00000612273 KDM6BO15054 1643 aa19.29■□□□□ 0.68
COL6A1-207ENST00000612273 SALL2Q9Y467 1007 aaPredicted RBP19.28■□□□□ 0.68
COL6A1-207ENST00000612273 KIF7Q2M1P5 1343 aa19.26■□□□□ 0.67
COL6A1-207ENST00000612273 DENND4BO75064 1496 aaPredicted RBP19.26■□□□□ 0.67
COL6A1-207ENST00000612273 CCDC7Q96M83 1385 aa19.26■□□□□ 0.67
COL6A1-207ENST00000612273 SUPT6HQ7KZ85 1726 aaKnown RBP19.25■□□□□ 0.67
COL6A1-207ENST00000612273 CFDP1Q9UEE9 299 aaPredicted RBP19.25■□□□□ 0.67
COL6A1-207ENST00000612273 LRRIQ1Q96JM4 1722 aa19.25■□□□□ 0.67
COL6A1-207ENST00000612273 EHBP1L1Q8N3D4 1523 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms