RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.19■□□□□ 0.5
TCF3-220ENST00000611869 EIF4G1Q04637 1599 aaKnown RBP18.17■□□□□ 0.5
TCF3-220ENST00000611869 CLSPNQ9HAW4 1339 aa18.17■□□□□ 0.5
TCF3-220ENST00000611869 PLEKHD1A6NEE1 506 aa18.15■□□□□ 0.5
TCF3-220ENST00000611869 HNRNPUQ00839 825 aaKnown RBP eCLIP18.15■□□□□ 0.5
TCF3-220ENST00000611869 ERCC6Q03468 1493 aa18.15■□□□□ 0.5
TCF3-220ENST00000611869 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.49
TCF3-220ENST00000611869 CFDP1Q9UEE9 299 aaPredicted RBP18.14■□□□□ 0.49
TCF3-220ENST00000611869 KDM2AQ9Y2K7 1162 aa18.14■□□□□ 0.49
TCF3-220ENST00000611869 FKBP8Q14318 412 aa18.12■□□□□ 0.49
TCF3-220ENST00000611869 FAM9BQ8IZU0 186 aa18.12■□□□□ 0.49
TCF3-220ENST00000611869 NCAPD3P42695 1498 aa18.11■□□□□ 0.49
TCF3-220ENST00000611869 KCNH8Q96L42 1107 aa18.11■□□□□ 0.49
TCF3-220ENST00000611869 FHOD3Q2V2M9 1422 aa18.09■□□□□ 0.49
TCF3-220ENST00000611869 EIF4G2P78344 907 aaKnown RBP eCLIP18.08■□□□□ 0.493e-7■■■■■ 49.2
TCF3-220ENST00000611869 FANCD2Q9BXW9 1451 aa18.08■□□□□ 0.48
TCF3-220ENST00000611869 SETD5Q9C0A6 1442 aa18.06■□□□□ 0.48
TCF3-220ENST00000611869 RAB3GAP2Q9H2M9 1393 aa18.05■□□□□ 0.48
TCF3-220ENST00000611869 SYNJ1O43426 1573 aa18.05■□□□□ 0.48
TCF3-220ENST00000611869 ARHGAP35Q9NRY4 1499 aa18.04■□□□□ 0.48
TCF3-220ENST00000611869 IGF1RP08069 1367 aa18.03■□□□□ 0.48
TCF3-220ENST00000611869 CHGAP10645 457 aaKnown RBP18.02■□□□□ 0.47
TCF3-220ENST00000611869 NPM1P06748 294 aaKnown RBP eCLIP18.01■□□□□ 0.47
TCF3-220ENST00000611869 MRS2Q9HD23 443 aa18■□□□□ 0.47
TCF3-220ENST00000611869 FGD5Q6ZNL6 1462 aa18■□□□□ 0.47
TCF3-220ENST00000611869 FMN1Q68DA7 1419 aa18■□□□□ 0.47
TCF3-220ENST00000611869 MYT1Q01538 1121 aa18■□□□□ 0.47
TCF3-220ENST00000611869 BICRAQ9NZM4 1560 aa17.99■□□□□ 0.47
TCF3-220ENST00000611869 RGL3Q3MIN7 710 aa17.96■□□□□ 0.47
TCF3-220ENST00000611869 SALL2Q9Y467 1007 aaPredicted RBP17.96■□□□□ 0.47
TCF3-220ENST00000611869 RAD54L2Q9Y4B4 1467 aa17.96■□□□□ 0.47
TCF3-220ENST00000611869 DAXXQ9UER7 740 aaPredicted RBP17.95■□□□□ 0.46
TCF3-220ENST00000611869 KIF21BO75037 1637 aa17.93■□□□□ 0.46
TCF3-220ENST00000611869 TMC1Q8TDI8 760 aa17.93■□□□□ 0.46
TCF3-220ENST00000611869 FOXD1Q16676 465 aa17.92■□□□□ 0.46
TCF3-220ENST00000611869 CFTRP13569 1480 aa17.92■□□□□ 0.46
TCF3-220ENST00000611869 DHX57Q6P158 1386 aaKnown RBP17.91■□□□□ 0.46
TCF3-220ENST00000611869 IRX6P78412 446 aaPredicted RBP17.89■□□□□ 0.45
TCF3-220ENST00000611869 TIMELESSQ9UNS1 1208 aa17.88■□□□□ 0.45
TCF3-220ENST00000611869 SENP3-EIF4A1A0A087X0R7 540 aa17.87■□□□□ 0.45
TCF3-220ENST00000611869 ARAP1Q96P48 1450 aa17.83■□□□□ 0.45
TCF3-220ENST00000611869 CARD11Q9BXL7 1154 aa17.82■□□□□ 0.44
TCF3-220ENST00000611869 CUX1P39880 1505 aa17.81■□□□□ 0.44
TCF3-220ENST00000611869 NESP48681 1621 aa17.81■□□□□ 0.44
TCF3-220ENST00000611869 PPP1R15AO75807 674 aaPredicted RBP17.81■□□□□ 0.44
TCF3-220ENST00000611869 TOP2BQ02880 1626 aa17.81■□□□□ 0.44
TCF3-220ENST00000611869 PRXQ9BXM0 1461 aa17.8■□□□□ 0.44
TCF3-220ENST00000611869 MPHOSPH9Q99550 1183 aa17.8■□□□□ 0.44
TCF3-220ENST00000611869 HMGXB3Q12766 1538 aa17.8■□□□□ 0.44
TCF3-220ENST00000611869 GAPVD1Q14C86 1478 aa17.79■□□□□ 0.44
TCF3-220ENST00000611869 CARMIL2Q6F5E8 1435 aa17.78■□□□□ 0.44
TCF3-220ENST00000611869 SENP3Q9H4L4 574 aaPredicted RBP17.78■□□□□ 0.44
TCF3-220ENST00000611869 HSPA5P11021 654 aaKnown RBP17.76■□□□□ 0.43
TCF3-220ENST00000611869 STAG3Q9UJ98 1225 aa17.76■□□□□ 0.43
TCF3-220ENST00000611869 ERICH3Q5RHP9 1530 aa17.76■□□□□ 0.43
TCF3-220ENST00000611869 PKD2Q13563 968 aa17.76■□□□□ 0.43
TCF3-220ENST00000611869 JPH4Q96JJ6 628 aa17.76■□□□□ 0.43
TCF3-220ENST00000611869 UNC13AQ9UPW8 1703 aa17.75■□□□□ 0.43
TCF3-220ENST00000611869 CANXP27824 592 aaKnown RBP17.75■□□□□ 0.43
TCF3-220ENST00000611869 PHLDB1Q86UU1 1377 aa17.75■□□□□ 0.43
TCF3-220ENST00000611869 DCAF11Q8TEB1 546 aa17.73■□□□□ 0.43
TCF3-220ENST00000611869 CC2D2AQ9P2K1 1620 aa17.72■□□□□ 0.43
TCF3-220ENST00000611869 SUPT16HQ9Y5B9 1047 aaKnown RBP17.71■□□□□ 0.43
TCF3-220ENST00000611869 ESF1Q9H501 851 aaKnown RBP17.71■□□□□ 0.43
TCF3-220ENST00000611869 AQRO60306 1485 aaKnown RBP eCLIP17.7■□□□□ 0.422e-6■■■■□ 23.5
TCF3-220ENST00000611869 L3MBTL2Q969R5 705 aa17.7■□□□□ 0.42
TCF3-220ENST00000611869 RTL5Q5HYW3 569 aaPredicted RBP17.69■□□□□ 0.42
TCF3-220ENST00000611869 PLPPR3Q6T4P5 718 aa17.68■□□□□ 0.42
TCF3-220ENST00000611869 CCDC136Q96JN2 1154 aa17.68■□□□□ 0.42
TCF3-220ENST00000611869 LRRC9Q6ZRR7 1453 aa17.68■□□□□ 0.42
TCF3-220ENST00000611869 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
TCF3-220ENST00000611869 WDR43Q15061 677 aaKnown RBP eCLIP17.67■□□□□ 0.42
TCF3-220ENST00000611869 CCDC18Q5T9S5 1454 aa17.66■□□□□ 0.42
TCF3-220ENST00000611869 DNAJC5BQ9UF47 199 aa17.66■□□□□ 0.42
TCF3-220ENST00000611869 HNRNPMP52272 730 aaKnown RBP eCLIP17.65■□□□□ 0.429e-9■■■■■ 30
TCF3-220ENST00000611869 NUP155O75694 1391 aa17.65■□□□□ 0.42
TCF3-220ENST00000611869 POLA1P09884 1462 aaPredicted RBP17.64■□□□□ 0.41
TCF3-220ENST00000611869 NPM2Q86SE8 214 aaKnown RBP17.63■□□□□ 0.41
TCF3-220ENST00000611869 TOPBP1Q92547 1522 aa17.63■□□□□ 0.41
TCF3-220ENST00000611869 CCER2I3L3R5 266 aa17.63■□□□□ 0.41
TCF3-220ENST00000611869 NEFMP07197 916 aa17.63■□□□□ 0.41
TCF3-220ENST00000611869 ANKRD30AQ9BXX3 1397 aa17.62■□□□□ 0.41
TCF3-220ENST00000611869 BCL11AQ9H165 835 aa17.62■□□□□ 0.41
TCF3-220ENST00000611869 FGD6Q6ZV73 1430 aa17.62■□□□□ 0.41
TCF3-220ENST00000611869 RRBP1Q9P2E9 1410 aaKnown RBP17.59■□□□□ 0.41
TCF3-220ENST00000611869 ZNF644Q9H582 1327 aaPredicted RBP17.59■□□□□ 0.41
TCF3-220ENST00000611869 CASKIN1Q8WXD9 1431 aa17.58■□□□□ 0.41
TCF3-220ENST00000611869 ANP32AP39687 249 aaKnown RBP17.58■□□□□ 0.4
TCF3-220ENST00000611869 KNSTRNQ9Y448 316 aa17.56■□□□□ 0.4
TCF3-220ENST00000611869 MYOM3Q5VTT5 1437 aa17.55■□□□□ 0.4
TCF3-220ENST00000611869 CC2D1BQ5T0F9 858 aaKnown RBP17.55■□□□□ 0.4
TCF3-220ENST00000611869 EFCAB2Q5VUJ9 269 aa17.54■□□□□ 0.4
TCF3-220ENST00000611869 SLC24A1O60721 1099 aa17.52■□□□□ 0.4
TCF3-220ENST00000611869 NCOA2Q15596 1464 aa17.51■□□□□ 0.39
TCF3-220ENST00000611869 CDCA8Q53HL2 280 aa17.5■□□□□ 0.39
TCF3-220ENST00000611869 PTPRGP23470 1445 aa17.49■□□□□ 0.39
TCF3-220ENST00000611869 FYCO1Q9BQS8 1478 aa17.49■□□□□ 0.39
TCF3-220ENST00000611869 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
TCF3-220ENST00000611869 GRIN2BQ13224 1484 aa17.48■□□□□ 0.39
TCF3-220ENST00000611869 TMF1P82094 1093 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms