RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 SETD5Q9C0A6 1442 aa12.09□□□□□ -0.47
LIG4-204ENST00000611712 ZNF777Q9ULD5 760 aaPredicted RBP12.08□□□□□ -0.48
LIG4-204ENST00000611712 CDK11AQ9UQ88 783 aaPredicted RBP12.08□□□□□ -0.48
LIG4-204ENST00000611712 EIF4G1Q04637 1599 aaKnown RBP12.07□□□□□ -0.48
LIG4-204ENST00000611712 NCAPD3P42695 1498 aa12.07□□□□□ -0.48
LIG4-204ENST00000611712 HNRNPUQ00839 825 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIG4-204ENST00000611712 IGF1RP08069 1367 aa12.05□□□□□ -0.48
LIG4-204ENST00000611712 ARAP1Q96P48 1450 aa12.02□□□□□ -0.48
LIG4-204ENST00000611712 PRXQ9BXM0 1461 aa12.02□□□□□ -0.48
LIG4-204ENST00000611712 SUPT16HQ9Y5B9 1047 aaKnown RBP12.02□□□□□ -0.49
LIG4-204ENST00000611712 UNC13AQ9UPW8 1703 aa12.01□□□□□ -0.49
LIG4-204ENST00000611712 TOP2BQ02880 1626 aa12.01□□□□□ -0.49
LIG4-204ENST00000611712 FHOD3Q2V2M9 1422 aa12.01□□□□□ -0.49
LIG4-204ENST00000611712 ARHGAP35Q9NRY4 1499 aa12.01□□□□□ -0.49
LIG4-204ENST00000611712 TIMELESSQ9UNS1 1208 aa12.01□□□□□ -0.49
LIG4-204ENST00000611712 TDRD9Q8NDG6 1382 aaKnown RBP12□□□□□ -0.49
LIG4-204ENST00000611712 ERICH3Q5RHP9 1530 aa12□□□□□ -0.49
LIG4-204ENST00000611712 FAM9BQ8IZU0 186 aa11.99□□□□□ -0.49
LIG4-204ENST00000611712 PEG3Q9GZU2 1588 aa11.99□□□□□ -0.49
LIG4-204ENST00000611712 EIF4G2P78344 907 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG4-204ENST00000611712 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
LIG4-204ENST00000611712 CFTRP13569 1480 aa11.97□□□□□ -0.49
LIG4-204ENST00000611712 FGD5Q6ZNL6 1462 aa11.97□□□□□ -0.49
LIG4-204ENST00000611712 CUX1P39880 1505 aa11.96□□□□□ -0.49
LIG4-204ENST00000611712 SLC4A1APQ9BWU0 796 aaKnown RBP11.96□□□□□ -0.5
LIG4-204ENST00000611712 PPP1R15AO75807 674 aaPredicted RBP11.95□□□□□ -0.5
LIG4-204ENST00000611712 FMN1Q68DA7 1419 aa11.95□□□□□ -0.5
LIG4-204ENST00000611712 FANCD2Q9BXW9 1451 aa11.95□□□□□ -0.5
LIG4-204ENST00000611712 RRBP1Q9P2E9 1410 aaKnown RBP11.93□□□□□ -0.5
LIG4-204ENST00000611712 KCNH8Q96L42 1107 aa11.93□□□□□ -0.5
LIG4-204ENST00000611712 MRS2Q9HD23 443 aa11.93□□□□□ -0.5
LIG4-204ENST00000611712 IRX6P78412 446 aaPredicted RBP11.93□□□□□ -0.5
LIG4-204ENST00000611712 CHMP7Q8WUX9 453 aaPredicted RBP11.93□□□□□ -0.5
LIG4-204ENST00000611712 PHLDB1Q86UU1 1377 aa11.92□□□□□ -0.5
LIG4-204ENST00000611712 HMGXB3Q12766 1538 aa11.91□□□□□ -0.5
LIG4-204ENST00000611712 RAD54L2Q9Y4B4 1467 aa11.9□□□□□ -0.5
LIG4-204ENST00000611712 CCER2I3L3R5 266 aa11.89□□□□□ -0.51
LIG4-204ENST00000611712 LRRC9Q6ZRR7 1453 aa11.88□□□□□ -0.51
LIG4-204ENST00000611712 CFDP1Q9UEE9 299 aaPredicted RBP11.88□□□□□ -0.51
LIG4-204ENST00000611712 PDS5BQ9NTI5 1447 aa11.88□□□□□ -0.51
LIG4-204ENST00000611712 TSPY4P0CV99 314 aa11.87□□□□□ -0.51
LIG4-204ENST00000611712 TSPY10P0CW01 314 aa11.87□□□□□ -0.51
LIG4-204ENST00000611712 KDM2AQ9Y2K7 1162 aa11.86□□□□□ -0.51
LIG4-204ENST00000611712 FOXD1Q16676 465 aa11.86□□□□□ -0.51
LIG4-204ENST00000611712 HSPA5P11021 654 aaKnown RBP11.85□□□□□ -0.51
LIG4-204ENST00000611712 PLEKHD1A6NEE1 506 aa11.83□□□□□ -0.52
LIG4-204ENST00000611712 TMC1Q8TDI8 760 aa11.82□□□□□ -0.52
LIG4-204ENST00000611712 MPHOSPH9Q99550 1183 aa11.82□□□□□ -0.52
LIG4-204ENST00000611712 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.81□□□□□ -0.52
LIG4-204ENST00000611712 FGD6Q6ZV73 1430 aa11.8□□□□□ -0.52
LIG4-204ENST00000611712 BIVM-ERCC5R4GMW8 1640 aa11.79□□□□□ -0.52
LIG4-204ENST00000611712 SALL2Q9Y467 1007 aaPredicted RBP11.79□□□□□ -0.52
LIG4-204ENST00000611712 CCDC18Q5T9S5 1454 aa11.79□□□□□ -0.52
LIG4-204ENST00000611712 TIAM1Q13009 1591 aa11.78□□□□□ -0.52
LIG4-204ENST00000611712 CASKIN1Q8WXD9 1431 aa11.78□□□□□ -0.52
LIG4-204ENST00000611712 SENP3-EIF4A1A0A087X0R7 540 aa11.78□□□□□ -0.52
LIG4-204ENST00000611712 L3MBTL2Q969R5 705 aa11.78□□□□□ -0.52
LIG4-204ENST00000611712 GAPVD1Q14C86 1478 aa11.77□□□□□ -0.53
LIG4-204ENST00000611712 TSHZ2Q9NRE2 1034 aa11.77□□□□□ -0.53
LIG4-204ENST00000611712 NESP48681 1621 aa11.76□□□□□ -0.53
LIG4-204ENST00000611712 DAXXQ9UER7 740 aaPredicted RBP11.75□□□□□ -0.53
LIG4-204ENST00000611712 CCDC136Q96JN2 1154 aa11.75□□□□□ -0.53
LIG4-204ENST00000611712 CARD11Q9BXL7 1154 aa11.74□□□□□ -0.53
LIG4-204ENST00000611712 POLA1P09884 1462 aaPredicted RBP11.74□□□□□ -0.53
LIG4-204ENST00000611712 FYCO1Q9BQS8 1478 aa11.74□□□□□ -0.53
LIG4-204ENST00000611712 RGL3Q3MIN7 710 aa11.74□□□□□ -0.53
LIG4-204ENST00000611712 MYOM3Q5VTT5 1437 aa11.73□□□□□ -0.53
LIG4-204ENST00000611712 TOPBP1Q92547 1522 aa11.73□□□□□ -0.53
LIG4-204ENST00000611712 RTL5Q5HYW3 569 aaPredicted RBP11.73□□□□□ -0.53
LIG4-204ENST00000611712 ANP32EQ9BTT0 268 aa11.72□□□□□ -0.53
LIG4-204ENST00000611712 UACAQ9BZF9 1416 aa11.72□□□□□ -0.53
LIG4-204ENST00000611712 PKD2Q13563 968 aa11.71□□□□□ -0.53
LIG4-204ENST00000611712 CC2D2AQ9P2K1 1620 aa11.71□□□□□ -0.53
LIG4-204ENST00000611712 NCOA2Q15596 1464 aa11.7□□□□□ -0.54
LIG4-204ENST00000611712 ERCC6Q03468 1493 aa11.7□□□□□ -0.54
LIG4-204ENST00000611712 ANP32AP39687 249 aaKnown RBP11.7□□□□□ -0.54
LIG4-204ENST00000611712 PPP4R2Q9NY27 417 aa11.7□□□□□ -0.54
LIG4-204ENST00000611712 RBM19Q9Y4C8 960 aaKnown RBP11.69□□□□□ -0.54
LIG4-204ENST00000611712 EFCAB5A4FU69 1503 aa11.69□□□□□ -0.54
LIG4-204ENST00000611712 WDR97A6NE52 1622 aa11.68□□□□□ -0.54
LIG4-204ENST00000611712 MAP3K1Q13233 1512 aa11.68□□□□□ -0.54
LIG4-204ENST00000611712 B4GALNT3Q6L9W6 998 aa11.68□□□□□ -0.54
LIG4-204ENST00000611712 DCAF11Q8TEB1 546 aa11.67□□□□□ -0.54
LIG4-204ENST00000611712 ABCA10Q8WWZ4 1543 aa11.67□□□□□ -0.54
LIG4-204ENST00000611712 PCF11O94913 1555 aaKnown RBP11.66□□□□□ -0.54
LIG4-204ENST00000611712 DNMBPQ6XZF7 1577 aa11.66□□□□□ -0.54
LIG4-204ENST00000611712 NPM2Q86SE8 214 aaKnown RBP11.66□□□□□ -0.54
LIG4-204ENST00000611712 AQRO60306 1485 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIG4-204ENST00000611712 ZNF644Q9H582 1327 aaPredicted RBP11.65□□□□□ -0.54
LIG4-204ENST00000611712 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.64□□□□□ -0.559e-9■■■■■ 43.9
LIG4-204ENST00000611712 HFM1A2PYH4 1435 aa11.64□□□□□ -0.55
LIG4-204ENST00000611712 NUP155O75694 1391 aa11.64□□□□□ -0.55
LIG4-204ENST00000611712 CARMIL2Q6F5E8 1435 aa11.63□□□□□ -0.55
LIG4-204ENST00000611712 ANKRD30AQ9BXX3 1397 aa11.63□□□□□ -0.55
LIG4-204ENST00000611712 PRKRIP1Q9H875 184 aaPredicted RBP11.63□□□□□ -0.55
LIG4-204ENST00000611712 JPH4Q96JJ6 628 aa11.62□□□□□ -0.55
LIG4-204ENST00000611712 WASHC2AQ641Q2 1341 aa11.61□□□□□ -0.55
LIG4-204ENST00000611712 CHGAP10645 457 aaKnown RBP11.6□□□□□ -0.55
LIG4-204ENST00000611712 DNAJC5BQ9UF47 199 aa11.6□□□□□ -0.55
LIG4-204ENST00000611712 NAIPQ13075 1403 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms